Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002838

Physical Location & Seq

Genomic Coordinates Reverse (-)

29236993 .. 29240142

Gene Structure 3150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g41280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGGTTTGGGTTGGAAGTACAACGCAGGATTGGGGTTGATTGGTACCGTCGTCTTCATATGGGTCGCCTCTGCAGAGGTTACTCAGAGAATTTTCACAGAGTACAAACAGCCATTTTCACTCACCTATCTCGGGGTGTCTCTGATGGTCGTCTATCTACCTATAGCAGCCTTTAAGGACTGGATCTGCAGCTTCCTGAGCTTTTCAAACCCTCTTCCAACAAATGAATTTCATCACAGTGCAGAAAAAGATATCACAAGTTCCTTAATTACTGATAAAGACCTCAGCGATAGGGAAGAAGGGTTCCCTGAAAAGGATAAGAATCAAGTAGATGAGCCTCTGTTTCTTGCACAAAGAAATCAACTTGGTCCATTGGAAATTGCAAAATGTGGCTTAATTCTTACTCCAGCATGGTTTATCACAGAGTATTTGTCGAACTCTGCACTGGCAAATACTAGTGTTGCAAGTACAACTGTGCTAACTTCTACATCGGGGCTCTTTACACTTTTGTTCGGAGCACTTCTTCGTCAGGACTCCATAAACATTCCAAAGATGGTTGCTGTTTTCATCAGCATGGCTGGTGTTGCCATGACCACAGCTGGAAAAACTTGGGCACCTGATGAACCGCTCAGCATATCTGAGACTAGAAAGCACTCAATAATAGGAGACATTTTGGGTCTTCTGTCAGCAGCATCATATGGATTATTCACAGTGTTACTCAAGAAATATGCTGGATCAGAAGAGGAAGGGGATAAGGCTGATGTGCAAAAGCTATTTGGATATATTGGTCTCTTCACTCTTCTTGGTCTGTGGTGGCTTGTCTGGCCGCTGAGTGCTATGGGGATTGAACCTTCTTTTGAATTTCCACCATCAGGATCTGTTGGGGAAGCTGTGCTGTTAAATGGCTTTGTGGGGAGTGTTCTTTCAGATTATTTTTGGGCTCTTTCTGTTGTTTGGACATCTCCATTAGTTGCAACGTTGGGCATGTCCTTGACAATTCCCTTTGCTATGGTTGCTGACATGGTGATTCACCGCCGTCGTTTCTCTGCAATCTACATCTTTGGTTGCATTCAGGTTTTTGCAGGATTTGTCATGGCAAACCTTTCGGACAAGTTTTCTAAGCAGGAAGTTGTAATAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

381

Amino Acids

41.63

Weight (kDa)

4.99

Isoelectric Point (pI)

31.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	132 - 199	8.5e-07	EamA-like transporter family
EamA	PF00892	221 - 367	7.4e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32140
fragaria_vesca	FvH4_2g28780 FvH4_2g28780 FvH4_2g28780 FvH4_2g41280 FvH4_2g41280
malus_domestica	MD08G1052500.v1.1 MD08G1157100.v1.1 MD15G1043000.v1.1 MD15G1128200.v1.1
prunus_persica	Prupe.1G396300_v2.0.a1 Prupe.1G396300_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1
pyrus_communis	pycom08g04380 pycom08g12940 pycom15g11540
rosa_chinensis	RchiOBHm_Chr6g0297541 RchiOBHm_Chr6g0299221
rosa_laevigata	RLG00000011452 RLG00000011585
rosa_multiflora	Rmu_ssc0000319.1_g000003
rosa_roxburghii	Rroxscaffold_7G00168900 Rroxscaffold_7G00170380
rosa_rugosa	Rorug06G0273300 Rorug06G0273400 Rorug06G0286300
rosa_samantha	Rh6AG384400 Rh6AG397500 Rh6BG392500 Rh6BG406100 Rh6CG398400 Rh6CG412200 Rh6DG384900 Rh6DG398900
rosa_wichuraiana	Rw6G033480 Rw6G034800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	44
AccB1I	GGYRCC	2 cut(s)	44, 613
AccBSI	CCGCTC	1 cut(s)	628
AciI	CCGC	3 cut(s)	626, 827, 1033
AclI	AACGTT	1 cut(s)	977
AclWI	GGATC	3 cut(s)	191, 742, 883
AcoI	YGGCCR	1 cut(s)	824
AcsI	RAATTY	3 cut(s)	90, 227, 860
AfaI	GTAC	4 cut(s)	20, 46, 104, 469
AfiI	CCNNNNNNNGG	3 cut(s)	132, 313, 872
AgsI	TTSAA	3 cut(s)	207, 848, 860
AhlI	ACTAGT	1 cut(s)	455
AloI	GAACNNNNNNTCC	2 cut(s)	287, 319
AluBI	AGCT	5 cut(s)	192, 201, 599, 772, 890
AluI	AGCT	5 cut(s)	192, 201, 599, 772, 890
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	4 cut(s)	144, 635, 660, 794
AlwI	GGATC	3 cut(s)	191, 742, 883
AlwNI	CAGNNNCTG	1 cut(s)	878
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	1 cut(s)	824
ApeKI	GCWGC	3 cut(s)	167, 189, 689
ApoI	RAATTY	3 cut(s)	90, 227, 860
Asp718I	GGTACC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	368
AsuHPI	GGTGA	3 cut(s)	115, 1022, 1036
AvaI	CYCGRG	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	368
BaeGI	GKGCMC	1 cut(s)	616
BaeI	ACNNNNGTAYC	2 cut(s)	36, 69
BanI	GGYRCC	2 cut(s)	44, 613
BanII	GRGCYC	2 cut(s)	498, 943
BbsI	GAAGAC	2 cut(s)	46, 671
Bbv12I	GWGCWC	1 cut(s)	520
BbvCI	CCTCAGC	1 cut(s)	284
BbvI	GCAGC	3 cut(s)	179, 201, 701
BccI	CCATC	3 cut(s)	139, 547, 877
BceAI	ACGGC	1 cut(s)	1020
BcgI	CGANNNNNNTGC	2 cut(s)	1086, 1120
BcoDI	GTCTC	4 cut(s)	144, 635, 660, 794
BcuI	ACTAGT	1 cut(s)	455
BfaI	CTAG	2 cut(s)	456, 645
BfmI	CTRYAG	3 cut(s)	72, 162, 187
BisI	GCNGC	4 cut(s)	168, 190, 690, 827
BlpI	GCTNAGC	1 cut(s)	629
BlsI	GCNGC	4 cut(s)	169, 191, 691, 828
Bme18I	GGWCC	1 cut(s)	368
BmeT110I	CYCGRG	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	3 cut(s)	46, 305, 615
BmsI	GCATC	1 cut(s)	701
BpiI	GAAGAC	2 cut(s)	46, 671
BpmI	CTGGAG	1 cut(s)	390
Bpu10I	CCTNAGC	2 cut(s)	197, 284
Bpu1102I	GCTNAGC	1 cut(s)	629
BpuEI	CTTGAG	1 cut(s)	704
BsaBI	GATNNNNATC	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	794
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 313, 872
Bse1I	ACTGG	2 cut(s)	185, 450
Bse8I	GATNNNNATC	1 cut(s)	321
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	3 cut(s)	132, 313, 872
BseMII	CTCAG	6 cut(s)	98, 188, 298, 630, 643, 821
BseNI	ACTGG	2 cut(s)	185, 450
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	3 cut(s)	179, 201, 701
BsgI	GTGCAG	2 cut(s)	261, 426
BshFI	GGCC	1 cut(s)	826
BshNI	GGYRCC	2 cut(s)	44, 613
BsiHKAI	GWGCWC	1 cut(s)	520
BsiHKCI	CYCGRG	1 cut(s)	131
BslI	CCNNNNNNNGG	3 cut(s)	132, 313, 872
BsmAI	GTCTC	4 cut(s)	144, 635, 660, 794
BsmI	GAATGC	1 cut(s)	1068
BsnI	GGCC	1 cut(s)	826
Bso31I	GGTCTC	1 cut(s)	794
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	4 cut(s)	498, 520, 616, 943
Bsp143I	GATC	3 cut(s)	183, 734, 875
Bsp1720I	GCTNAGC	1 cut(s)	629
BspACI	CCGC	3 cut(s)	626, 827, 1033
BspANI	GGCC	1 cut(s)	826
BspCNI	CTCAG	6 cut(s)	97, 189, 297, 631, 642, 822
BspLI	GGNNCC	3 cut(s)	46, 305, 615
BspMAI	CTGCAG	2 cut(s)	76, 191
BspPI	GGATC	3 cut(s)	191, 742, 883
BspT107I	GGYRCC	2 cut(s)	44, 613
BspTNI	GGTCTC	1 cut(s)	794
BsrBI	CCGCTC	1 cut(s)	628
BsrI	ACTGG	2 cut(s)	185, 450
BssMI	GATC	3 cut(s)	183, 734, 875
Bst4CI	ACNGT	4 cut(s)	49, 239, 475, 712
Bst6I	CTCTTC	4 cut(s)	219, 735, 797, 804
BstDEI	CTNAG	7 cut(s)	84, 197, 284, 629, 639, 830, 1119
BstKTI	GATC	3 cut(s)	186, 737, 878
BstMAI	GTCTC	4 cut(s)	144, 635, 660, 794
BstMBI	GATC	3 cut(s)	183, 734, 875
BstMWI	GCNNNNNNNGC	4 cut(s)	198, 584, 823, 1013
BstNSI	RCATGY	1 cut(s)	988
BstSFI	CTRYAG	3 cut(s)	72, 162, 187
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	3 cut(s)	179, 201, 701
BstV2I	GAAGAC	2 cut(s)	46, 671
BstX2I	RGATCY	2 cut(s)	183, 875
BstYI	RGATCY	2 cut(s)	183, 875
BsuRI	GGCC	1 cut(s)	826
BtsIMutI	CAGTG	3 cut(s)	244, 443, 717
CaiI	CAGNNNCTG	1 cut(s)	878
Cfr13I	GGNCC	1 cut(s)	368
Csp6I	GTAC	4 cut(s)	19, 45, 103, 468
CviAII	CATG	6 cut(s)	411, 574, 589, 985, 1021, 1093
CviQI	GTAC	4 cut(s)	19, 45, 103, 468
DdeI	CTNAG	7 cut(s)	84, 197, 284, 629, 639, 830, 1119
DpnI	GATC	3 cut(s)	185, 736, 877
DpnII	GATC	3 cut(s)	183, 734, 875
EaeI	YGGCCR	1 cut(s)	824
Eam1104I	CTCTTC	4 cut(s)	219, 735, 797, 804
EarI	CTCTTC	4 cut(s)	219, 735, 797, 804
Eco24I	GRGCYC	2 cut(s)	498, 943
Eco31I	GGTCTC	1 cut(s)	794
Eco32I	GATATC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	368
Eco88I	CYCGRG	1 cut(s)	131
EcoRV	GATATC	1 cut(s)	253
EcoT38I	GRGCYC	2 cut(s)	498, 943
FaeI	CATG	6 cut(s)	414, 577, 592, 988, 1024, 1096
FatI	CATG	6 cut(s)	410, 573, 588, 984, 1020, 1092
FauNDI	CATATG	2 cut(s)	59, 697
Fnu4HI	GCNGC	4 cut(s)	168, 190, 690, 827
FriOI	GRGCYC	2 cut(s)	498, 943
Fsp4HI	GCNGC	4 cut(s)	168, 190, 690, 827
FspBI	CTAG	2 cut(s)	456, 645
GluI	GCNGC	4 cut(s)	168, 190, 690, 827
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	826
Hin1II	CATG	6 cut(s)	414, 577, 592, 988, 1024, 1096
HinfI	GANTC	3 cut(s)	322, 533, 1027
HphI	GGTGA	3 cut(s)	115, 1022, 1036
Hpy188I	TCNGA	7 cut(s)	87, 144, 515, 640, 739, 928, 1108
Hpy188III	TCNNGA	4 cut(s)	196, 530, 721, 873
Hpy99I	CGWCG	2 cut(s)	53, 1041
HpyAV	CCTTC	3 cut(s)	293, 740, 861
HpyCH4III	ACNGT	4 cut(s)	49, 239, 475, 712
HpyCH4IV	ACGT	1 cut(s)	977
HpyF10VI	GCNNNNNNNGC	4 cut(s)	198, 584, 823, 1013
HpyF3I	CTNAG	7 cut(s)	84, 197, 284, 629, 639, 830, 1119
HpySE526I	ACGT	1 cut(s)	977
Hsp92II	CATG	6 cut(s)	414, 577, 592, 988, 1024, 1096
KpnI	GGTACC	1 cut(s)	48
Kzo9I	GATC	3 cut(s)	183, 734, 875
LmnI	GCTCC	1 cut(s)	515
Lsp1109I	GCAGC	3 cut(s)	179, 201, 701
LweI	GCATC	1 cut(s)	701
MaeI	CTAG	2 cut(s)	456, 645
MaeII	ACGT	1 cut(s)	977
MaeIII	GTNAC	2 cut(s)	79, 714
MalI	GATC	3 cut(s)	185, 736, 877
MbiI	CCGCTC	1 cut(s)	628
MboI	GATC	3 cut(s)	183, 734, 875
MboII	GAAGA	8 cut(s)	46, 206, 308, 515, 671, 752, 784, 791
MflI	RGATCY	2 cut(s)	183, 875
MhlI	GDGCHC	4 cut(s)	498, 520, 616, 943
MluCI	AATT	7 cut(s)	90, 227, 267, 378, 396, 860, 996
MlyI	GAGTC	1 cut(s)	527
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	6 cut(s)	70, 79, 222, 293, 348, 736
MseI	TTAA	4 cut(s)	174, 266, 395, 899
MslI	CAYNNNNRTG	2 cut(s)	237, 572
MspA1I	CMGCKG	2 cut(s)	599, 829
Mva1269I	GAATGC	1 cut(s)	1068
MwoI	GCNNNNNNNGC	4 cut(s)	198, 584, 823, 1013
NdeI	CATATG	2 cut(s)	59, 697
NdeII	GATC	3 cut(s)	183, 734, 875
NlaIII	CATG	6 cut(s)	414, 577, 592, 988, 1024, 1096
NlaIV	GGNNCC	3 cut(s)	46, 305, 615
NspI	RCATGY	1 cut(s)	988
PctI	GAATGC	1 cut(s)	1068
PfeI	GAWTC	2 cut(s)	322, 1027
PkrI	GCNGC	4 cut(s)	169, 191, 691, 828
PleI	GAGTC	1 cut(s)	527
PpsI	GAGTC	1 cut(s)	527
Psp1406I	AACGTT	1 cut(s)	977
PspN4I	GGNNCC	3 cut(s)	46, 305, 615
PspPI	GGNCC	1 cut(s)	368
PstI	CTGCAG	2 cut(s)	76, 191
PstNI	CAGNNNCTG	1 cut(s)	878
PsuI	RGATCY	2 cut(s)	183, 875
PvuII	CAGCTG	1 cut(s)	599
RsaI	GTAC	4 cut(s)	20, 46, 104, 469
RsaNI	GTAC	4 cut(s)	19, 45, 103, 468
RseI	CAYNNNNRTG	2 cut(s)	237, 572
SaqAI	TTAA	4 cut(s)	174, 266, 395, 899
SatI	GCNGC	4 cut(s)	168, 190, 690, 827
Sau3AI	GATC	3 cut(s)	183, 734, 875
Sau96I	GGNCC	1 cut(s)	368
SchI	GAGTC	1 cut(s)	527
SduI	GDGCHC	4 cut(s)	498, 520, 616, 943
SfaNI	GCATC	1 cut(s)	701
SfcI	CTRYAG	3 cut(s)	72, 162, 187
SinI	GGWCC	1 cut(s)	368
SmiMI	CAYNNNNRTG	2 cut(s)	237, 572
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
SpeI	ACTAGT	1 cut(s)	455
Sse9I	AATT	7 cut(s)	90, 227, 267, 378, 396, 860, 996
SsiI	CCGC	3 cut(s)	626, 827, 1033
SspMI	CTAG	2 cut(s)	456, 645
TaaI	ACNGT	4 cut(s)	49, 239, 475, 712
TaiI	ACGT	1 cut(s)	980
TaqI	TCGA	1 cut(s)	434
TasI	AATT	7 cut(s)	90, 227, 267, 378, 396, 860, 996
TatI	WGTACW	3 cut(s)	18, 102, 467
TauI	GCSGC	1 cut(s)	829
TfiI	GAWTC	2 cut(s)	322, 1027
Tru1I	TTAA	4 cut(s)	174, 266, 395, 899
Tru9I	TTAA	4 cut(s)	174, 266, 395, 899
TscAI	CASTG	3 cut(s)	244, 450, 717
TseI	GCWGC	3 cut(s)	167, 189, 689
TspDTI	ATGAA	5 cut(s)	46, 221, 240, 556, 636
TspRI	CASTG	3 cut(s)	244, 450, 717
VpaK11BI	GGWCC	1 cut(s)	368
XapI	RAATTY	3 cut(s)	90, 227, 860
XceI	RCATGY	1 cut(s)	988
XspI	CTAG	2 cut(s)	456, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.