Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002838

Physical Location & Seq

Genomic Coordinates Forward (+)

10829715 .. 10833400

Gene Structure 3686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00170380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGGTTGGAGATACAGAGCTGGGTTGCTTCTAATTGGTGCTGTGGTTATCATTTGGGTTACCTCTGCAGAAGTCACACAAGATATCTATGAAAAGTATAAGCAGCCATTTGCAGTAACATATCTTGGAGCTTCTCTTATGGTAGTGTACCTCCCAATAGCTTTCCTTAAGGACTGGTTGTGTAATTTACTTAAACGTCGCTCTTCTAAAAGTGGCAAAAATGCAGAAAGCATGAATGAGTATTCTGCTGGATTTAGTTCACCACTAAAACACAATGGAGTGCAGAAAGATTTTGAATTGGAAATTCATACCTTGTCCAGAAAAGACAGTGATGCAGACCTTTCACCTTGTGCAGAAGAAAGGCCTTTGGTTTCTAAACTCAAAGACAATTTAAATGTGCTGAAACATGACAGAGAGCTCACACCAAGGGAAATTGCTACTTATGGATTTTACCTTGCCCCTCTTTGGTTTTTTACAGAGTATTTTGCAAATGCTGCTCTCGCGCGTACTGAGTGTTGCAAGTACAACAGTCCTATCCTCAACTTCAGGACTCTTTACACTCTTTATTGGTGCATTCTTGGGCCAAGATTCTTTAAATATAGCAAAAGTGGTGGCTGTCTTTGTCAGCATGGCGGGTGTAGCCATGACAACTATGGGAAAAACGTGGGCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

224

Amino Acids

25.56

Weight (kDa)

8.81

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32140
fragaria_vesca	FvH4_2g28780 FvH4_2g28780 FvH4_2g28780 FvH4_2g41280 FvH4_2g41280
malus_domestica	MD08G1052500.v1.1 MD08G1157100.v1.1 MD15G1043000.v1.1 MD15G1128200.v1.1
prunus_persica	Prupe.1G396300_v2.0.a1 Prupe.1G396300_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1
pyrus_communis	pycom08g04380 pycom08g12940 pycom15g11540
rosa_chinensis	RchiOBHm_Chr6g0297541 RchiOBHm_Chr6g0299221
rosa_laevigata	RLG00000011452 RLG00000011585
rosa_multiflora	Rmu_ssc0000319.1_g000003
rosa_roxburghii	Rroxscaffold_7G00168900 Rroxscaffold_7G00170380
rosa_rugosa	Rorug06G0273300 Rorug06G0273400 Rorug06G0286300
rosa_samantha	Rh6AG384400 Rh6AG397500 Rh6BG392500 Rh6BG406100 Rh6CG398400 Rh6CG412200 Rh6DG384900 Rh6DG398900
rosa_wichuraiana	Rw6G033480 Rw6G034800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	503, 505
AciI	CCGC	1 cut(s)	633
AcsI	RAATTY	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	529
AdeI	CACNNNGTG	1 cut(s)	350
AfaI	GTAC	3 cut(s)	149, 508, 524
AfiI	CCNNNNNNNGG	1 cut(s)	465
AflII	CTTAAG	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	296
AluBI	AGCT	4 cut(s)	20, 131, 161, 418
AluI	AGCT	4 cut(s)	20, 131, 161, 418
Alw21I	GWGCWC	1 cut(s)	420
AoxI	GGCC	2 cut(s)	362, 581
ApeKI	GCWGC	2 cut(s)	103, 494
ApoI	RAATTY	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	505
AspS9I	GGNCC	1 cut(s)	581
AsuHPI	GGTGA	2 cut(s)	252, 336
BanII	GRGCYC	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	2 cut(s)	115, 481
BfmI	CTRYAG	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	167
BisI	GCNGC	2 cut(s)	104, 495
BlsI	GCNGC	2 cut(s)	105, 496
BmgT120I	GGNCC	1 cut(s)	581
BmsI	GCATC	1 cut(s)	322
BsaJI	CCNNGG	1 cut(s)	425
Bsc4I	CCNNNNNNNGG	1 cut(s)	465
Bse1I	ACTGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	425
BseLI	CCNNNNNNNGG	1 cut(s)	465
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	1 cut(s)	179
BseXI	GCAGC	2 cut(s)	115, 481
BseYI	CCCAGC	1 cut(s)	20
BsgI	GTGCAG	2 cut(s)	302, 372
Bsh1236I	CGCG	2 cut(s)	503, 505
BshFI	GGCC	2 cut(s)	364, 583
BsiHKAI	GWGCWC	1 cut(s)	420
BslI	CCNNNNNNNGG	1 cut(s)	465
BsmI	GAATGC	1 cut(s)	573
BsnI	GGCC	2 cut(s)	364, 583
Bsp1286I	GDGCHC	1 cut(s)	420
BspACI	CCGC	1 cut(s)	633
BspANI	GGCC	2 cut(s)	364, 583
BspCNI	CTCAG	1 cut(s)	502
BspFNI	CGCG	2 cut(s)	503, 505
BspMAI	CTGCAG	1 cut(s)	70
BspQI	GCTCTTC	1 cut(s)	208
BspTI	CTTAAG	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	425
BssT1I	CCWWGG	1 cut(s)	425
Bst4CI	ACNGT	2 cut(s)	329, 530
Bst6I	CTCTTC	1 cut(s)	208
BstAFI	CTTAAG	1 cut(s)	167
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstDEI	CTNAG	1 cut(s)	510
BstEII	GGTNACC	1 cut(s)	58
BstFNI	CGCG	2 cut(s)	503, 505
BstHHI	GCGC	1 cut(s)	505
BstMWI	GCNNNNNNNGC	3 cut(s)	494, 500, 639
BstPI	GGTNACC	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	66
BstUI	CGCG	2 cut(s)	503, 505
BstV1I	GCAGC	2 cut(s)	115, 481
BsuRI	GGCC	2 cut(s)	364, 583
BtsIMutI	CAGTG	1 cut(s)	334
CfoI	GCGC	1 cut(s)	505
Cfr13I	GGNCC	1 cut(s)	581
Csp6I	GTAC	3 cut(s)	148, 507, 523
CspCI	CAANNNNNGTGG	2 cut(s)	592, 627
CviAII	CATG	4 cut(s)	232, 407, 629, 644
CviQI	GTAC	3 cut(s)	148, 507, 523
DdeI	CTNAG	1 cut(s)	510
DraI	TTTAAA	2 cut(s)	393, 595
DraIII	CACNNNGTG	1 cut(s)	350
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
Ecl136II	GAGCTC	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	425
Eco147I	AGGCCT	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	420
Eco32I	GATATC	1 cut(s)	85
Eco53kI	GAGCTC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	529
Eco91I	GGTNACC	1 cut(s)	58
EcoICRI	GAGCTC	1 cut(s)	418
EcoO65I	GGTNACC	1 cut(s)	58
EcoRV	GATATC	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	425
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	425
FaeI	CATG	4 cut(s)	235, 410, 632, 647
FatI	CATG	4 cut(s)	231, 406, 628, 643
FauI	CCCGC	1 cut(s)	626
Fnu4HI	GCNGC	2 cut(s)	104, 495
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	2 cut(s)	104, 495
GlaI	GCGC	1 cut(s)	504
GluI	GCNGC	2 cut(s)	104, 495
GsaI	CCCAGC	1 cut(s)	24
HaeIII	GGCC	2 cut(s)	364, 583
HhaI	GCGC	1 cut(s)	505
Hin1II	CATG	4 cut(s)	235, 410, 632, 647
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HinfI	GANTC	2 cut(s)	550, 588
HphI	GGTGA	2 cut(s)	252, 336
Hpy166II	GTNNAC	2 cut(s)	148, 260
Hpy188III	TCNNGA	2 cut(s)	318, 547
Hpy8I	GTNNAC	2 cut(s)	148, 260
Hpy99I	CGWCG	1 cut(s)	201
HpyCH4III	ACNGT	2 cut(s)	329, 530
HpyCH4IV	ACGT	2 cut(s)	196, 663
HpyCH4V	TGCA	9 cut(s)	68, 113, 224, 283, 335, 353, 488, 519, 573
HpyF10VI	GCNNNNNNNGC	3 cut(s)	494, 500, 639
HpyF3I	CTNAG	1 cut(s)	510
HpySE526I	ACGT	2 cut(s)	196, 663
Hsp92II	CATG	4 cut(s)	235, 410, 632, 647
HspAI	GCGC	1 cut(s)	503
LguI	GCTCTTC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	5 cut(s)	6, 160, 234, 331, 532
Lsp1109I	GCAGC	2 cut(s)	115, 481
LweI	GCATC	1 cut(s)	322
MaeII	ACGT	2 cut(s)	196, 663
MaeIII	GTNAC	3 cut(s)	58, 73, 115
MboII	GAAGA	2 cut(s)	195, 368
MhlI	GDGCHC	1 cut(s)	420
MluCI	AATT	6 cut(s)	33, 184, 296, 303, 388, 432
MlyI	GAGTC	1 cut(s)	544
MnlI	CCTC	4 cut(s)	73, 161, 471, 548
MseI	TTAA	4 cut(s)	168, 192, 392, 594
MspCI	CTTAAG	1 cut(s)	167
Mva1269I	GAATGC	1 cut(s)	573
MvnI	CGCG	2 cut(s)	503, 505
MwoI	GCNNNNNNNGC	3 cut(s)	494, 500, 639
NlaIII	CATG	4 cut(s)	235, 410, 632, 647
NmuCI	GTSAC	1 cut(s)	73
PceI	AGGCCT	1 cut(s)	364
PciSI	GCTCTTC	1 cut(s)	208
PctI	GAATGC	1 cut(s)	573
PfeI	GAWTC	1 cut(s)	588
PkrI	GCNGC	2 cut(s)	105, 496
PleI	GAGTC	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	544
Psp124BI	GAGCTC	1 cut(s)	420
PspEI	GGTNACC	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	20
PspPI	GGNCC	1 cut(s)	581
PstI	CTGCAG	1 cut(s)	70
RsaI	GTAC	3 cut(s)	149, 508, 524
RsaNI	GTAC	3 cut(s)	148, 507, 523
SacI	GAGCTC	1 cut(s)	420
SapI	GCTCTTC	1 cut(s)	208
SaqAI	TTAA	4 cut(s)	168, 192, 392, 594
SatI	GCNGC	2 cut(s)	104, 495
Sau96I	GGNCC	1 cut(s)	581
SchI	GAGTC	1 cut(s)	544
SduI	GDGCHC	1 cut(s)	420
SfaNI	GCATC	1 cut(s)	322
SfcI	CTRYAG	1 cut(s)	66
SmiI	ATTTAAAT	1 cut(s)	393
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	6 cut(s)	33, 184, 296, 303, 388, 432
SseBI	AGGCCT	1 cut(s)	364
SsiI	CCGC	1 cut(s)	633
SstI	GAGCTC	1 cut(s)	420
StuI	AGGCCT	1 cut(s)	364
StyI	CCWWGG	1 cut(s)	425
SwaI	ATTTAAAT	1 cut(s)	393
TaaI	ACNGT	2 cut(s)	329, 530
TaiI	ACGT	2 cut(s)	199, 666
TasI	AATT	6 cut(s)	33, 184, 296, 303, 388, 432
TatI	WGTACW	1 cut(s)	522
TfiI	GAWTC	1 cut(s)	588
Tru1I	TTAA	4 cut(s)	168, 192, 392, 594
Tru9I	TTAA	4 cut(s)	168, 192, 392, 594
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	2 cut(s)	103, 494
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	3 cut(s)	105, 248, 296
TspRI	CASTG	1 cut(s)	334
Vha464I	CTTAAG	1 cut(s)	167
XapI	RAATTY	1 cut(s)	303
XcmI	CCANNNNNNNNNTGG	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.