Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002838

Physical Location & Seq

Genomic Coordinates Forward (+)

17491524 .. 17495421

Gene Structure 3898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1157100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGATGGGGTGGAGATACAGAGCTGGGTTGTTCCTAATTGCTGCTGTTGTTGTCATTTGGGTCACCTCTGCAGAAGTTACCCAGGGTATATTTACGGACTATAAGCAGCCGTTTGCAGTAACATATCTTGGAGCTTCTCTTATGGTAGTTTACATCCCAATAGCATTCATTAAGGATTGGTTGTGTAATTTTCTAAAACGCCGCTCTTCTAAAAGTGGTAAAAATGCAGAAAGCGTGAATGAGTTTTCTGCTGGATTTAGTTCTTCTATAAAACTCAATGGATTGCAGAAAGAATTTGAATTGGAAATTCATGGGTCCTTGACCAGAAAAGACAGTGATGCAGAGCTTTCACCTCATATTGAAGAACAACCTTTGGTTTCTAAATACAAAGATGACTTGAATGTGCTGAAACATGATAAGGAGGTTACTACGAGGCAAATTGCTACTTATGGGTTTTACATTGCCCCTCTCTGGTTTATTACGGAGTACTTTTCAAATGCTGCTCTCGCGCGTACAAGTGTTGCAAGTACAACAGTATTATCGTCAACGTCGGGACTATTTACTCTTTTTGTTGGTGCATTCTTGGGCGAAGATTCTTTAAATATAGCGAAGGTGGTTGCTGTCTTTGTTAGCATGGCTGGTGTAGCTATGACAACTCTGGGCAAAACATGGGCTACAGATGATTCACAACTCAGTGCTGCCAATGGGAAACGCTCTCTTGTTGGAGATCTGTTTGGTCTTCTCTCAGCCATGTCATACGGTCTATTTACTGTTCTTCTCAAAAAGTTTGCGGGCGAAGGAGGAGAAAGGATCGACGTGCAAAAGTTGTTTGGGTATATTGGATTATTTACACTTGTATCGTTATGGTGGCTTGTTTGGCCTTTGACAGCATTGGGCATTGAGCCCAAGTTTATGATTCCTCACTCTGCTAAATTGGAAGAAGTTGTTATTGCCAACGGCTTTATTGGAAGTGTACTCTCTGACTACTTCTGGGCACTATGTGTTGTGTGGACAACTCCACTCGTTGCCACCTTGGGCATGTCGCTCACCATCCCCCTTGCTATGGTTGCTGACATGTTTATCCATGGCCGCCATTATTCAGCAGTTTACATACTTGGCTCTGCTCAGGTATTTGCAGGATTTGTAATAGCTAATCTTTCGGATTGGTGCTCGAAGAAGTTGGGATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

397

Amino Acids

43.46

Weight (kDa)

7.01

Isoelectric Point (pI)

29.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32140
fragaria_vesca	FvH4_2g28780 FvH4_2g28780 FvH4_2g28780 FvH4_2g41280 FvH4_2g41280
malus_domestica	MD08G1052500.v1.1 MD08G1157100.v1.1 MD15G1043000.v1.1 MD15G1128200.v1.1
prunus_persica	Prupe.1G396300_v2.0.a1 Prupe.1G396300_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1
pyrus_communis	pycom08g04380 pycom08g12940 pycom15g11540
rosa_chinensis	RchiOBHm_Chr6g0297541 RchiOBHm_Chr6g0299221
rosa_laevigata	RLG00000011452 RLG00000011585
rosa_multiflora	Rmu_ssc0000319.1_g000003
rosa_roxburghii	Rroxscaffold_7G00168900 Rroxscaffold_7G00170380
rosa_rugosa	Rorug06G0273300 Rorug06G0273400 Rorug06G0286300
rosa_samantha	Rh6AG384400 Rh6AG397500 Rh6BG392500 Rh6BG406100 Rh6CG398400 Rh6CG412200 Rh6DG384900 Rh6DG398900
rosa_wichuraiana	Rw6G033480 Rw6G034800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	204
AccII	CGCG	2 cut(s)	509, 511
AciI	CCGC	3 cut(s)	202, 791, 1090
AclWI	GGATC	1 cut(s)	818
AcoI	YGGCCR	1 cut(s)	1087
AcsI	RAATTY	2 cut(s)	293, 306
AdeI	CACNNNGTG	1 cut(s)	1001
AfaI	GTAC	4 cut(s)	488, 514, 529, 975
AfiI	CCNNNNNNNGG	2 cut(s)	471, 1063
AflIII	ACRYGT	1 cut(s)	1074
AgsI	TTSAA	4 cut(s)	299, 362, 400, 495
AjiI	CACGTC	1 cut(s)	817
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	5 cut(s)	23, 134, 346, 647, 1151
AluI	AGCT	5 cut(s)	23, 134, 346, 647, 1151
Alw21I	GWGCWC	1 cut(s)	1172
AlwI	GGATC	1 cut(s)	818
AoxI	GGCC	2 cut(s)	878, 1087
ApeKI	GCWGC	4 cut(s)	41, 106, 500, 698
ApoI	RAATTY	2 cut(s)	293, 306
AspLEI	GCGC	1 cut(s)	511
AspS9I	GGNCC	1 cut(s)	315
AsuHPI	GGTGA	3 cut(s)	55, 342, 1039
AvaII	GGWCC	1 cut(s)	315
BaeGI	GKGCMC	1 cut(s)	997
BaeI	ACNNNNGTAYC	2 cut(s)	840, 873
BanII	GRGCYC	1 cut(s)	906
BbsI	GAAGAC	1 cut(s)	731
Bbv12I	GWGCWC	1 cut(s)	1172
BbvI	GCAGC	4 cut(s)	28, 118, 487, 685
BccI	CCATC	1 cut(s)	1058
BceAI	ACGGC	2 cut(s)	94, 973
BciT130I	CCWGG	1 cut(s)	83
BfmI	CTRYAG	2 cut(s)	69, 675
BglII	AGATCT	1 cut(s)	727
BisI	GCNGC	6 cut(s)	42, 107, 202, 501, 699, 1090
BlsI	GCNGC	6 cut(s)	43, 108, 203, 502, 700, 1091
BmcAI	AGTACT	1 cut(s)	488
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	315
BmgBI	CACGTC	1 cut(s)	817
BmgT120I	GGNCC	1 cut(s)	315
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	731
Bpu10I	CCTNAGC	1 cut(s)	1125
BsaJI	CCNNGG	4 cut(s)	81, 82, 1032, 1084
Bsc4I	CCNNNNNNNGG	2 cut(s)	471, 1063
Bse3DI	GCAATG	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	4 cut(s)	81, 82, 1032, 1084
BseGI	GGATG	2 cut(s)	153, 1050
BseLI	CCNNNNNNNGG	2 cut(s)	471, 1063
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	3 cut(s)	706, 759, 1139
BseRI	GAGGAG	1 cut(s)	816
BseSI	GKGCMC	1 cut(s)	997
BseXI	GCAGC	4 cut(s)	28, 118, 487, 685
BseYI	CCCAGC	1 cut(s)	23
Bsh1236I	CGCG	2 cut(s)	509, 511
BshFI	GGCC	2 cut(s)	880, 1089
BsiHKAI	GWGCWC	1 cut(s)	1172
BslFI	GGGAC	1 cut(s)	567
BslI	CCNNNNNNNGG	2 cut(s)	471, 1063
BsmFI	GGGAC	1 cut(s)	567
BsmI	GAATGC	2 cut(s)	164, 578
BsnI	GGCC	2 cut(s)	880, 1089
Bsp1286I	GDGCHC	3 cut(s)	906, 997, 1172
Bsp143I	GATC	2 cut(s)	727, 810
Bsp19I	CCATGG	1 cut(s)	1084
BspACI	CCGC	3 cut(s)	202, 791, 1090
BspANI	GGCC	2 cut(s)	880, 1089
BspCNI	CTCAG	3 cut(s)	705, 758, 1138
BspFNI	CGCG	2 cut(s)	509, 511
BspLI	GGNNCC	1 cut(s)	316
BspMAI	CTGCAG	1 cut(s)	73
BspPI	GGATC	1 cut(s)	818
BspQI	GCTCTTC	1 cut(s)	211
BsrBI	CCGCTC	1 cut(s)	204
BsrDI	GCAATG	1 cut(s)	459
BssECI	CCNNGG	4 cut(s)	81, 82, 1032, 1084
BssMI	GATC	2 cut(s)	727, 810
BssT1I	CCWWGG	2 cut(s)	1032, 1084
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	4 cut(s)	335, 535, 761, 772
Bst6I	CTCTTC	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	793
BstDEI	CTNAG	3 cut(s)	692, 745, 1125
BstDSI	CCRYGG	1 cut(s)	1084
BstEII	GGTNACC	1 cut(s)	61
BstF5I	GGATG	2 cut(s)	153, 1050
BstFNI	CGCG	2 cut(s)	509, 511
BstHHI	GCGC	1 cut(s)	511
BstKTI	GATC	2 cut(s)	730, 813
BstMBI	GATC	2 cut(s)	727, 810
BstMWI	GCNNNNNNNGC	4 cut(s)	506, 644, 877, 1067
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	2 cut(s)	1042, 1078
BstPI	GGTNACC	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	2 cut(s)	69, 675
BstSLI	GKGCMC	1 cut(s)	997
BstUI	CGCG	2 cut(s)	509, 511
BstV1I	GCAGC	4 cut(s)	28, 118, 487, 685
BstV2I	GAAGAC	1 cut(s)	731
BstX2I	RGATCY	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	727
BsuRI	GGCC	2 cut(s)	880, 1089
BtgI	CCRYGG	1 cut(s)	1084
BtrI	CACGTC	1 cut(s)	817
BtsCI	GGATG	2 cut(s)	153, 1050
BtsIMutI	CAGTG	2 cut(s)	340, 700
Cac8I	GCNNGC	1 cut(s)	793
CfoI	GCGC	1 cut(s)	511
Cfr13I	GGNCC	1 cut(s)	315
Csp6I	GTAC	4 cut(s)	487, 513, 528, 974
CviAII	CATG	8 cut(s)	311, 413, 634, 669, 751, 1039, 1075, 1085
CviQI	GTAC	4 cut(s)	487, 513, 528, 974
DdeI	CTNAG	3 cut(s)	692, 745, 1125
DpnI	GATC	2 cut(s)	729, 812
DpnII	GATC	2 cut(s)	727, 810
DraI	TTTAAA	1 cut(s)	600
DraIII	CACNNNGTG	1 cut(s)	1001
EaeI	YGGCCR	1 cut(s)	1087
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
Eco130I	CCWWGG	2 cut(s)	1032, 1084
Eco24I	GRGCYC	1 cut(s)	906
Eco47I	GGWCC	1 cut(s)	315
Eco91I	GGTNACC	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	315
EcoO65I	GGTNACC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	2 cut(s)	1032, 1084
EcoT38I	GRGCYC	1 cut(s)	906
ErhI	CCWWGG	2 cut(s)	1032, 1084
FaeI	CATG	8 cut(s)	314, 416, 637, 672, 754, 1042, 1078, 1088
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	8 cut(s)	310, 412, 633, 668, 750, 1038, 1074, 1084
FauI	CCCGC	1 cut(s)	784
Fnu4HI	GCNGC	6 cut(s)	42, 107, 202, 501, 699, 1090
FokI	GGATG	2 cut(s)	140, 1037
FriOI	GRGCYC	1 cut(s)	906
Fsp4HI	GCNGC	6 cut(s)	42, 107, 202, 501, 699, 1090
GlaI	GCGC	1 cut(s)	510
GluI	GCNGC	6 cut(s)	42, 107, 202, 501, 699, 1090
GsaI	CCCAGC	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	880, 1089
HhaI	GCGC	1 cut(s)	511
Hin1II	CATG	8 cut(s)	314, 416, 637, 672, 754, 1042, 1078, 1088
Hin6I	GCGC	1 cut(s)	509
HinP1I	GCGC	1 cut(s)	509
HincII	GTYRAC	1 cut(s)	546
HindII	GTYRAC	1 cut(s)	546
HinfI	GANTC	3 cut(s)	593, 683, 916
HphI	GGTGA	3 cut(s)	55, 342, 1039
Hpy166II	GTNNAC	5 cut(s)	151, 546, 974, 1011, 1108
Hpy188I	TCNGA	2 cut(s)	982, 1162
Hpy188III	TCNNGA	1 cut(s)	552
Hpy8I	GTNNAC	5 cut(s)	151, 546, 974, 1011, 1108
Hpy99I	CGWCG	2 cut(s)	553, 818
HpyAV	CCTTC	2 cut(s)	604, 791
HpyCH4III	ACNGT	4 cut(s)	335, 535, 761, 772
HpyCH4IV	ACGT	2 cut(s)	548, 816
HpyCH4V	TGCA	9 cut(s)	71, 116, 227, 286, 341, 524, 578, 820, 1136
HpyF10VI	GCNNNNNNNGC	4 cut(s)	506, 644, 877, 1067
HpyF3I	CTNAG	3 cut(s)	692, 745, 1125
HpySE526I	ACGT	2 cut(s)	548, 816
Hsp92II	CATG	8 cut(s)	314, 416, 637, 672, 754, 1042, 1078, 1088
HspAI	GCGC	1 cut(s)	509
Kzo9I	GATC	2 cut(s)	727, 810
LguI	GCTCTTC	1 cut(s)	211
LmnI	GCTCC	1 cut(s)	131
Lsp1109I	GCAGC	4 cut(s)	28, 118, 487, 685
LweI	GCATC	1 cut(s)	328
MaeII	ACGT	2 cut(s)	548, 816
MaeIII	GTNAC	4 cut(s)	61, 76, 118, 424
MalI	GATC	2 cut(s)	729, 812
MbiI	CCGCTC	1 cut(s)	204
MboI	GATC	2 cut(s)	727, 810
MboII	GAAGA	8 cut(s)	198, 255, 374, 602, 731, 767, 950, 1186
MflI	RGATCY	1 cut(s)	727
MhlI	GDGCHC	3 cut(s)	906, 997, 1172
MluCI	AATT	7 cut(s)	36, 187, 293, 299, 306, 438, 932
MmeI	TCCRAC	1 cut(s)	703
MnlI	CCTC	7 cut(s)	76, 363, 415, 426, 477, 794, 930
MseI	TTAA	2 cut(s)	171, 599
MspR9I	CCNGG	1 cut(s)	83
Mva1269I	GAATGC	2 cut(s)	164, 578
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	2 cut(s)	509, 511
MwoI	GCNNNNNNNGC	4 cut(s)	506, 644, 877, 1067
NcoI	CCATGG	1 cut(s)	1084
NdeII	GATC	2 cut(s)	727, 810
NlaIII	CATG	8 cut(s)	314, 416, 637, 672, 754, 1042, 1078, 1088
NlaIV	GGNNCC	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	61
NspI	RCATGY	2 cut(s)	1042, 1078
PasI	CCCWGGG	1 cut(s)	82
PciI	ACATGT	1 cut(s)	1074
PciSI	GCTCTTC	1 cut(s)	211
PctI	GAATGC	2 cut(s)	164, 578
PfeI	GAWTC	3 cut(s)	593, 683, 916
PkrI	GCNGC	6 cut(s)	43, 108, 203, 502, 700, 1091
PpuMI	RGGWCCY	1 cut(s)	315
PscI	ACATGT	1 cut(s)	1074
Psp5II	RGGWCCY	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	81
PspEI	GGTNACC	1 cut(s)	61
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	1 cut(s)	315
PspPPI	RGGWCCY	1 cut(s)	315
PstI	CTGCAG	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	727
RsaI	GTAC	4 cut(s)	488, 514, 529, 975
RsaNI	GTAC	4 cut(s)	487, 513, 528, 974
SapI	GCTCTTC	1 cut(s)	211
SaqAI	TTAA	2 cut(s)	171, 599
SatI	GCNGC	6 cut(s)	42, 107, 202, 501, 699, 1090
Sau3AI	GATC	2 cut(s)	727, 810
Sau96I	GGNCC	1 cut(s)	315
ScaI	AGTACT	1 cut(s)	488
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	3 cut(s)	906, 997, 1172
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	2 cut(s)	69, 675
SinI	GGWCC	1 cut(s)	315
Sse9I	AATT	7 cut(s)	36, 187, 293, 299, 306, 438, 932
SsiI	CCGC	3 cut(s)	202, 791, 1090
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	2 cut(s)	1032, 1084
TaaI	ACNGT	4 cut(s)	335, 535, 761, 772
TaiI	ACGT	2 cut(s)	551, 819
TaqI	TCGA	2 cut(s)	813, 1172
TasI	AATT	7 cut(s)	36, 187, 293, 299, 306, 438, 932
TatI	WGTACW	3 cut(s)	486, 527, 973
TauI	GCSGC	2 cut(s)	204, 1092
TfiI	GAWTC	3 cut(s)	593, 683, 916
Tru1I	TTAA	2 cut(s)	171, 599
Tru9I	TTAA	2 cut(s)	171, 599
TscAI	CASTG	2 cut(s)	340, 700
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	4 cut(s)	41, 106, 500, 698
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	2 cut(s)	157, 299
TspGWI	ACGGA	2 cut(s)	110, 497
TspRI	CASTG	2 cut(s)	340, 700
VpaK11BI	GGWCC	1 cut(s)	315
XapI	RAATTY	2 cut(s)	293, 306
XceI	RCATGY	2 cut(s)	1042, 1078
ZrmI	AGTACT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.