Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002838

Physical Location & Seq

Genomic Coordinates Forward (+)

3375277 .. 3378018

Gene Structure 2742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g04380.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGGTTGGAAGTACAACGCCGGTTTGGGGTTGATTGGCACAGTTGTGTTCATCTGGGTCGCGTCTGCAGAGGTTACTCAGAGAATTTTCTGTGAGTACAAACAGCCGTTTTCGCTCACGTACCTCGGTGTGTCTCTGATGGCGGTCTATCTACCCATATCGGCATTGAAAGATTGGATCTACAACTTGCTGCACCCAAATTTGGTTAAGAACTTTTACAATGGCATTATCGCGGGAACTTCTGGAGGGCTTGGTATTCCTCTTAGAATAAATGAAATGCTCCACAGTCCAGAAACAGATGTTAGAAGCTGCCTAATTACTGACAAAGATCTTAGTAATACAGAAGAAGGGCGAGCTCTAACGGATAAGAGCAAAGAAGATGAGCCGCGCTTGCTTGAACGGAGTTGTCAAATTAGTCCATGGGAAGTTGCAAAGTTTGGCTTAATTCTTACTCCAGTGTGGTTTATCACAGAGTATCTGTCAAACTCTGCACTGGCAAATACCAGTGTTGCAAGTACAACTGTCCTAACTTCTACGTCGGGGCTCTTTACACTTTTCTTTGGAGCTCTTCTTCATCAGGATTCCATAACTGTTACAAAGATGGTTGCTGTTTTTGTCAGCATGGCTGGTGTTGTCATGACCACGGTTGGAAAAACTTGGGCCCCTGATGAACTGCTGGGCATCTCTGAGATTAGAAGGCACGCTATAATGGGACATATTTTTGGTCTTCTCTCGGCTGCGTCATATGGATTGTTTACAGTGTTACTCAAGAAATTTGCTGGATCAGAAGATAAGGGAGATAAGGCTGATGTGCAGAAGCTTTTCGGATACATTGGTCTCTTCGCTCTGCTTGGTCTGTGGTGGCTCGTGTGGCCACTCAATGCCATCGGGATTGAACCTTCATTTGAGTTTCCACATTCAAAATCTATTGCCGAAGCTGTGCTGATAAATGGCTTTGTCGGGAGTGTTCTTTCGGATTATTTTTGGTGGCTCTTTCCGTGGTTTGGACATCTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

340

Amino Acids

37.53

Weight (kDa)

5.91

Isoelectric Point (pI)

31.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32140
fragaria_vesca	FvH4_2g28780 FvH4_2g28780 FvH4_2g28780 FvH4_2g41280 FvH4_2g41280
malus_domestica	MD08G1052500.v1.1 MD08G1157100.v1.1 MD15G1043000.v1.1 MD15G1128200.v1.1
prunus_persica	Prupe.1G396300_v2.0.a1 Prupe.1G396300_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1
pyrus_communis	pycom08g04380 pycom08g12940 pycom15g11540
rosa_chinensis	RchiOBHm_Chr6g0297541 RchiOBHm_Chr6g0299221
rosa_laevigata	RLG00000011452 RLG00000011585
rosa_multiflora	Rmu_ssc0000319.1_g000003
rosa_roxburghii	Rroxscaffold_7G00168900 Rroxscaffold_7G00170380
rosa_rugosa	Rorug06G0273300 Rorug06G0273400 Rorug06G0286300
rosa_samantha	Rh6AG384400 Rh6AG397500 Rh6BG392500 Rh6BG406100 Rh6CG398400 Rh6CG412200 Rh6DG384900 Rh6DG398900
rosa_wichuraiana	Rw6G033480 Rw6G034800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	62, 233, 388
AciI	CCGC	3 cut(s)	143, 233, 386
AclWI	GGATC	2 cut(s)	185, 790
AcoI	YGGCCR	1 cut(s)	872
AcsI	RAATTY	3 cut(s)	84, 199, 773
AfaI	GTAC	4 cut(s)	14, 98, 122, 517
AfiI	CCNNNNNNNGG	3 cut(s)	27, 202, 1004
AgsI	TTSAA	4 cut(s)	169, 398, 896, 921
AleI	CACNNNNGTG	1 cut(s)	44
AluBI	AGCT	5 cut(s)	309, 356, 566, 820, 938
AluI	AGCT	5 cut(s)	309, 356, 566, 820, 938
Alw21I	GWGCWC	2 cut(s)	358, 568
Alw26I	GTCTC	2 cut(s)	138, 842
AlwI	GGATC	2 cut(s)	185, 790
AoxI	GGCC	2 cut(s)	660, 872
ApaI	GGGCCC	1 cut(s)	664
ApeKI	GCWGC	3 cut(s)	190, 309, 737
ApoI	RAATTY	3 cut(s)	84, 199, 773
Asp700I	GAANNNNTTC	1 cut(s)	821
AspLEI	GCGC	1 cut(s)	390
AspS9I	GGNCC	2 cut(s)	660, 661
BaeGI	GKGCMC	1 cut(s)	664
BaeI	ACNNNNGTAYC	2 cut(s)	820, 853
BalI	TGGCCA	1 cut(s)	874
BanII	GRGCYC	4 cut(s)	358, 546, 568, 664
BauI	CACGAG	1 cut(s)	866
BbsI	GAAGAC	1 cut(s)	719
Bbv12I	GWGCWC	2 cut(s)	358, 568
BbvI	GCAGC	3 cut(s)	177, 296, 724
BccI	CCATC	3 cut(s)	133, 595, 893
BceAI	ACGGC	1 cut(s)	91
BciVI	GTATCC	1 cut(s)	821
BcoDI	GTCTC	2 cut(s)	138, 842
BfmI	CTRYAG	1 cut(s)	66
BfuI	GTATCC	1 cut(s)	821
BglII	AGATCT	1 cut(s)	328
BisI	GCNGC	4 cut(s)	191, 310, 386, 738
BlsI	GCNGC	4 cut(s)	192, 311, 387, 739
BmgT120I	GGNCC	2 cut(s)	660, 661
BmiI	GGNNCC	2 cut(s)	662, 663
BmsI	GCATC	1 cut(s)	690
BpiI	GAAGAC	1 cut(s)	719
BpmI	CTGGAG	2 cut(s)	264, 438
BpuEI	CTTGAG	1 cut(s)	752
BsaAI	YACGTR	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	842
BsaJI	CCNNGG	4 cut(s)	124, 419, 642, 998
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 202, 1004
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	3 cut(s)	455, 498, 504
BseDI	CCNNGG	4 cut(s)	124, 419, 642, 998
BseLI	CCNNNNNNNGG	3 cut(s)	27, 202, 1004
BseMII	CTCAG	2 cut(s)	92, 678
BseNI	ACTGG	3 cut(s)	455, 498, 504
BseSI	GKGCMC	1 cut(s)	664
BseXI	GCAGC	3 cut(s)	177, 296, 724
BseYI	CCCAGC	1 cut(s)	676
BsgI	GTGCAG	3 cut(s)	176, 474, 833
Bsh1236I	CGCG	3 cut(s)	62, 233, 388
BshFI	GGCC	2 cut(s)	662, 874
BsiHKAI	GWGCWC	2 cut(s)	358, 568
BsiSI	CCGG	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	726
BslI	CCNNNNNNNGG	3 cut(s)	27, 202, 1004
BsmAI	GTCTC	2 cut(s)	138, 842
BsmFI	GGGAC	1 cut(s)	726
BsnI	GGCC	2 cut(s)	662, 874
Bso31I	GGTCTC	1 cut(s)	842
Bsp120I	GGGCCC	1 cut(s)	660
Bsp1286I	GDGCHC	4 cut(s)	358, 546, 568, 664
Bsp143I	GATC	3 cut(s)	177, 328, 782
Bsp19I	CCATGG	1 cut(s)	419
BspACI	CCGC	3 cut(s)	143, 233, 386
BspANI	GGCC	2 cut(s)	662, 874
BspCNI	CTCAG	2 cut(s)	91, 679
BspFNI	CGCG	3 cut(s)	62, 233, 388
BspHI	TCATGA	1 cut(s)	636
BspLI	GGNNCC	2 cut(s)	662, 663
BspMAI	CTGCAG	1 cut(s)	70
BspPI	GGATC	2 cut(s)	185, 790
BspQI	GCTCTTC	1 cut(s)	573
BspTNI	GGTCTC	1 cut(s)	842
BsrFI	RCCGGY	1 cut(s)	20
BsrI	ACTGG	3 cut(s)	455, 498, 504
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	4 cut(s)	124, 419, 642, 998
BssMI	GATC	3 cut(s)	177, 328, 782
BssSI	CACGAG	1 cut(s)	866
BssT1I	CCWWGG	1 cut(s)	419
Bst2BI	CACGAG	1 cut(s)	866
Bst4CI	ACNGT	6 cut(s)	43, 287, 523, 592, 646, 760
Bst6I	CTCTTC	2 cut(s)	573, 845
BstBAI	YACGTR	1 cut(s)	120
BstC8I	GCNNGC	3 cut(s)	354, 392, 702
BstDEI	CTNAG	4 cut(s)	78, 263, 332, 687
BstDSI	CCRYGG	3 cut(s)	419, 642, 998
BstFNI	CGCG	3 cut(s)	62, 233, 388
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	3 cut(s)	180, 331, 785
BstMAI	GTCTC	2 cut(s)	138, 842
BstMBI	GATC	3 cut(s)	177, 328, 782
BstMWI	GCNNNNNNNGC	3 cut(s)	112, 391, 871
BstSFI	CTRYAG	1 cut(s)	66
BstSLI	GKGCMC	1 cut(s)	664
BstUI	CGCG	3 cut(s)	62, 233, 388
BstV1I	GCAGC	3 cut(s)	177, 296, 724
BstV2I	GAAGAC	1 cut(s)	719
BstX2I	RGATCY	2 cut(s)	177, 328
BstYI	RGATCY	2 cut(s)	177, 328
BsuI	GTATCC	1 cut(s)	821
BsuRI	GGCC	2 cut(s)	662, 874
BtgI	CCRYGG	3 cut(s)	419, 642, 998
BtsIMutI	CAGTG	4 cut(s)	462, 491, 511, 765
Cac8I	GCNNGC	3 cut(s)	354, 392, 702
CciI	TCATGA	1 cut(s)	636
CfoI	GCGC	1 cut(s)	390
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	2 cut(s)	660, 661
CseI	GACGC	2 cut(s)	51, 729
Csp6I	GTAC	4 cut(s)	13, 97, 121, 516
CviAII	CATG	3 cut(s)	420, 622, 637
CviQI	GTAC	4 cut(s)	13, 97, 121, 516
DdeI	CTNAG	4 cut(s)	78, 263, 332, 687
DpnI	GATC	3 cut(s)	179, 330, 784
DpnII	GATC	3 cut(s)	177, 328, 782
EaeI	YGGCCR	1 cut(s)	872
Eam1104I	CTCTTC	2 cut(s)	573, 845
EarI	CTCTTC	2 cut(s)	573, 845
Ecl136II	GAGCTC	2 cut(s)	356, 566
Eco130I	CCWWGG	1 cut(s)	419
Eco24I	GRGCYC	4 cut(s)	358, 546, 568, 664
Eco31I	GGTCTC	1 cut(s)	842
Eco53kI	GAGCTC	2 cut(s)	356, 566
EcoICRI	GAGCTC	2 cut(s)	356, 566
EcoO109I	RGGNCCY	1 cut(s)	661
EcoT14I	CCWWGG	1 cut(s)	419
EcoT38I	GRGCYC	4 cut(s)	358, 546, 568, 664
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	3 cut(s)	423, 625, 640
FaiI	YATR	9 cut(s)	158, 421, 587, 623, 638, 707, 717, 745, 747
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FaqI	GGGAC	1 cut(s)	726
FatI	CATG	3 cut(s)	419, 621, 636
FauI	CCCGC	1 cut(s)	226
FauNDI	CATATG	1 cut(s)	745
Fnu4HI	GCNGC	4 cut(s)	191, 310, 386, 738
FriOI	GRGCYC	4 cut(s)	358, 546, 568, 664
Fsp4HI	GCNGC	4 cut(s)	191, 310, 386, 738
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	4 cut(s)	191, 310, 386, 738
GsaI	CCCAGC	1 cut(s)	680
GsuI	CTGGAG	2 cut(s)	264, 438
HaeIII	GGCC	2 cut(s)	662, 874
HapII	CCGG	1 cut(s)	21
HgaI	GACGC	2 cut(s)	51, 729
HhaI	GCGC	1 cut(s)	390
Hin1II	CATG	3 cut(s)	423, 625, 640
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HindIII	AAGCTT	1 cut(s)	818
HinfI	GANTC	1 cut(s)	581
HpaII	CCGG	1 cut(s)	21
Hpy166II	GTNNAC	1 cut(s)	756
Hpy188I	TCNGA	6 cut(s)	81, 138, 688, 787, 827, 976
Hpy188III	TCNNGA	7 cut(s)	243, 290, 578, 637, 769, 889, 961
Hpy8I	GTNNAC	1 cut(s)	756
Hpy99I	CGWCG	1 cut(s)	541
HpyAV	CCTTC	3 cut(s)	341, 690, 909
HpyCH4III	ACNGT	6 cut(s)	43, 287, 523, 592, 646, 760
HpyCH4IV	ACGT	2 cut(s)	119, 536
HpyCH4V	TGCA	6 cut(s)	68, 193, 431, 491, 512, 814
HpyF10VI	GCNNNNNNNGC	3 cut(s)	112, 391, 871
HpyF3I	CTNAG	4 cut(s)	78, 263, 332, 687
HpySE526I	ACGT	2 cut(s)	119, 536
Hsp92II	CATG	3 cut(s)	423, 625, 640
HspAI	GCGC	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	177, 328, 782
LguI	GCTCTTC	1 cut(s)	573
LmnI	GCTCC	2 cut(s)	285, 563
Lsp1109I	GCAGC	3 cut(s)	177, 296, 724
LweI	GCATC	1 cut(s)	690
MaeII	ACGT	2 cut(s)	119, 536
MaeIII	GTNAC	3 cut(s)	73, 592, 762
MalI	GATC	3 cut(s)	179, 330, 784
MboI	GATC	3 cut(s)	177, 328, 782
MboII	GAAGA	7 cut(s)	356, 389, 560, 563, 719, 800, 832
MflI	RGATCY	2 cut(s)	177, 328
MhlI	GDGCHC	4 cut(s)	358, 546, 568, 664
MlsI	TGGCCA	1 cut(s)	874
MluCI	AATT	6 cut(s)	84, 199, 315, 411, 444, 773
MluNI	TGGCCA	1 cut(s)	874
MmeI	TCCRAC	1 cut(s)	628
MnlI	CCTC	4 cut(s)	64, 134, 239, 270
Mox20I	TGGCCA	1 cut(s)	874
MroXI	GAANNNNTTC	1 cut(s)	821
MscI	TGGCCA	1 cut(s)	874
MseI	TTAA	2 cut(s)	207, 443
MslI	CAYNNNNRTG	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	874
MspI	CCGG	1 cut(s)	21
MvnI	CGCG	3 cut(s)	62, 233, 388
MwoI	GCNNNNNNNGC	3 cut(s)	112, 391, 871
NcoI	CCATGG	1 cut(s)	419
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	3 cut(s)	177, 328, 782
NlaIII	CATG	3 cut(s)	423, 625, 640
NlaIV	GGNNCC	2 cut(s)	662, 663
NmeAIII	GCCGAG	1 cut(s)	713
OliI	CACNNNNGTG	1 cut(s)	44
PagI	TCATGA	1 cut(s)	636
PciSI	GCTCTTC	1 cut(s)	573
PdmI	GAANNNNTTC	1 cut(s)	821
PfeI	GAWTC	1 cut(s)	581
PkrI	GCNGC	4 cut(s)	192, 311, 387, 739
Ppu21I	YACGTR	1 cut(s)	120
Psp124BI	GAGCTC	2 cut(s)	358, 568
PspFI	CCCAGC	1 cut(s)	676
PspN4I	GGNNCC	2 cut(s)	662, 663
PspOMI	GGGCCC	1 cut(s)	660
PspPI	GGNCC	2 cut(s)	660, 661
PstI	CTGCAG	1 cut(s)	70
PsuI	RGATCY	2 cut(s)	177, 328
RsaI	GTAC	4 cut(s)	14, 98, 122, 517
RsaNI	GTAC	4 cut(s)	13, 97, 121, 516
RseI	CAYNNNNRTG	1 cut(s)	44
SacI	GAGCTC	2 cut(s)	358, 568
SapI	GCTCTTC	1 cut(s)	573
SaqAI	TTAA	2 cut(s)	207, 443
SatI	GCNGC	4 cut(s)	191, 310, 386, 738
Sau3AI	GATC	3 cut(s)	177, 328, 782
Sau96I	GGNCC	2 cut(s)	660, 661
SduI	GDGCHC	4 cut(s)	358, 546, 568, 664
SfaNI	GCATC	1 cut(s)	690
SfcI	CTRYAG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
Sse9I	AATT	6 cut(s)	84, 199, 315, 411, 444, 773
SsiI	CCGC	3 cut(s)	143, 233, 386
SstI	GAGCTC	2 cut(s)	358, 568
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	6 cut(s)	43, 287, 523, 592, 646, 760
TaiI	ACGT	2 cut(s)	122, 539
TasI	AATT	6 cut(s)	84, 199, 315, 411, 444, 773
TatI	WGTACW	3 cut(s)	12, 96, 515
TauI	GCSGC	1 cut(s)	388
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	2 cut(s)	207, 443
Tru9I	TTAA	2 cut(s)	207, 443
TscAI	CASTG	4 cut(s)	462, 498, 511, 765
TseI	GCWGC	3 cut(s)	190, 309, 737
TspDTI	ATGAA	5 cut(s)	40, 288, 563, 684, 891
TspGWI	ACGGA	3 cut(s)	377, 415, 987
TspRI	CASTG	4 cut(s)	462, 498, 511, 765
XapI	RAATTY	3 cut(s)	84, 199, 773
XmnI	GAANNNNTTC	1 cut(s)	821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.