RLG00000011452

Solute carrier family 35 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002838
Physical Location & Seq
Reverse (-)
9523207 .. 9525977
2771 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011452

Sequence Viewer

Length: 1113 bp
ATGGGTTGGAAATACAACGCAGGATTGGGGTTGATTGGTGCCGTCGTCTTCATATGGGTCGCCTCTGCAGAGGTTACTCAGAAAATTTTCAGAGAGTACAAACAGCCTTTTTCACTCACCTATCTCGGCGTGTCTCTCATGGTCGTCTATCTACCTATAGCAGCCCTCAAGGACTGGATCTGCAGCTTACTGAGAACAAATGAATTTCATCACAGTGCAGAAACAGATATCACAACTTCCTTAATTACTGATAAAGACCTCAGTGATAGAGAAGAAGGGCGGCCTGTAATGGATAAGAATGAAGTAGATGAGCCTTACTTTCTTGCAAAAAGTAATCAACTTGGTCCATGGGAAATTGTAAAATCTGGCTTAATACTTACCCCAGCATGGTTTATTACAGAGTATTTGTCAAATTCTGCCCTGGCAAATACGAGTGTTGCAAGTACAACTGTCCTAACTTCTACATCGGGGCTCTTTACACTTTTGTTTGGAGCAATTCTTCGTCAGGACTCCATAAACATTCCAAAGATGGTTGCTGTTTTTATCAGCATGGCTGGTGTTGCCATGACCACAGCTGGAAAAACTTGGGCACCTGATGAACTGCTGAGTGTCTCTGAGACTAGAAAGCACTCAATAACAGGAGACATCTTCGGTCTTGTGTCAGCAGCATCATATGGATTATTTACAGTGTTACTGAAGAAATTTGCTGGATCAGAAGAGGAAGGGGATAAGGCTGATGTGCAAAAGCTGTTTGGATACATTGGTCTCTTCACTCTTCTTGGTCTGTGGTGGCTTGTGTGGCCGCTGAATGCTATGGGGATTGAACCGTCTTTTGAATTTCCACCATCAGGATCTGTTGGGGAAGCTGTAGTGTTAAATGGCTTTGTGGGAAGTGTTCTTTCAGATTATTTTTGGGCTCTTTCTGTAGTTTGGACATCTCCATTAGTTGCAACTTTGGGCATGTCCTTGACAATTCCCCTTGCTATGGTTGCTGACATGGTGATTCACGGCCGTCGTTACTCTGCAATCTACATCTTTGGTTGCATTCAGGTTTTTGCAGGATTTGTCATGGCAAACCTTTCAGACAAGTTTTCTAGCAAGGAAGAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

371

Amino Acids

40.49

Weight (kDa)

4.96

Isoelectric Point (pI)

26.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 117 - 191 2.4e-06 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 38, 589
AciI CCGC 2 cut(s) 280, 803
AclWI GGATC 3 cut(s) 185, 718, 859
AcoI YGGCCR 2 cut(s) 800, 1009
AcsI RAATTY 5 cut(s) 84, 203, 412, 701, 836
AcuI CTGAAG 1 cut(s) 716
AfaI GTAC 2 cut(s) 98, 445
AfiI CCNNNNNNNGG 3 cut(s) 387, 848, 985
AgsI TTSAA 2 cut(s) 824, 836
AjnI CCWGG 1 cut(s) 420
AluBI AGCT 4 cut(s) 186, 575, 748, 866
AluI AGCT 4 cut(s) 186, 575, 748, 866
Alw26I GTCTC 5 cut(s) 138, 611, 616, 636, 770
AlwI GGATC 3 cut(s) 185, 718, 859
AlwNI CAGNNNCTG 1 cut(s) 854
AoxI GGCC 3 cut(s) 281, 800, 1009
ApeKI GCWGC 3 cut(s) 161, 183, 665
ApoI RAATTY 5 cut(s) 84, 203, 412, 701, 836
Asp700I GAANNNNTTC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 344
AsuHPI GGTGA 2 cut(s) 109, 1012
AvaII GGWCC 1 cut(s) 344
BaeGI GKGCMC 1 cut(s) 592
BaeI ACNNNNGTAYC 2 cut(s) 748, 781
BanI GGYRCC 2 cut(s) 38, 589
BanII GRGCYC 2 cut(s) 474, 919
BbsI GAAGAC 1 cut(s) 40
BbvI GCAGC 3 cut(s) 173, 195, 677
BccI CCATC 2 cut(s) 523, 853
BceAI ACGGC 3 cut(s) 26, 996, 1024
BciT130I CCWGG 1 cut(s) 422
BciVI GTATCC 1 cut(s) 749
BcoDI GTCTC 5 cut(s) 138, 611, 616, 636, 770
BfaI CTAG 2 cut(s) 621, 1095
BfmI CTRYAG 5 cut(s) 66, 156, 181, 867, 924
BfuI GTATCC 1 cut(s) 749
BisI GCNGC 5 cut(s) 162, 184, 281, 666, 803
BlsI GCNGC 5 cut(s) 163, 185, 282, 667, 804
Bme1390I CCNGG 1 cut(s) 422
Bme18I GGWCC 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 344
BmiI GGNNCC 2 cut(s) 40, 591
BmrFI CCNGG 1 cut(s) 422
BmsI GCATC 1 cut(s) 677
BpiI GAAGAC 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 152
BsaI GGTCTC 1 cut(s) 770
BsaJI CCNNGG 2 cut(s) 347, 420
Bsc4I CCNNNNNNNGG 3 cut(s) 387, 848, 985
Bse1I ACTGG 1 cut(s) 179
BseBI CCWGG 1 cut(s) 422
BseDI CCNNGG 2 cut(s) 347, 420
BseLI CCNNNNNNNGG 3 cut(s) 387, 848, 985
BseMII CTCAG 5 cut(s) 92, 182, 274, 596, 606
BseNI ACTGG 1 cut(s) 179
BseSI GKGCMC 1 cut(s) 592
BseX3I CGGCCG 1 cut(s) 1009
BseXI GCAGC 3 cut(s) 173, 195, 677
BseYI CCCAGC 1 cut(s) 382
BsgI GTGCAG 1 cut(s) 237
Bsh1285I CGRYCG 1 cut(s) 1012
BshFI GGCC 3 cut(s) 283, 802, 1011
BshNI GGYRCC 2 cut(s) 38, 589
BsiEI CGRYCG 1 cut(s) 1012
BslI CCNNNNNNNGG 3 cut(s) 387, 848, 985
BsmAI GTCTC 5 cut(s) 138, 611, 616, 636, 770
BsmI GAATGC 2 cut(s) 814, 1044
BsnI GGCC 3 cut(s) 283, 802, 1011
Bso31I GGTCTC 1 cut(s) 770
Bsp1286I GDGCHC 3 cut(s) 474, 592, 919
Bsp143I GATC 3 cut(s) 177, 710, 851
Bsp19I CCATGG 1 cut(s) 347
BspACI CCGC 2 cut(s) 280, 803
BspANI GGCC 3 cut(s) 283, 802, 1011
BspCNI CTCAG 5 cut(s) 91, 183, 273, 597, 607
BspLI GGNNCC 2 cut(s) 40, 591
BspMAI CTGCAG 2 cut(s) 70, 185
BspPI GGATC 3 cut(s) 185, 718, 859
BspT107I GGYRCC 2 cut(s) 38, 589
BspTNI GGTCTC 1 cut(s) 770
BsrI ACTGG 1 cut(s) 179
BssECI CCNNGG 2 cut(s) 347, 420
BssMI GATC 3 cut(s) 177, 710, 851
BssT1I CCWWGG 1 cut(s) 347
Bst2UI CCWGG 1 cut(s) 422
Bst4CI ACNGT 4 cut(s) 215, 451, 688, 828
Bst6I CTCTTC 4 cut(s) 711, 773, 780, 1098
BstDEI CTNAG 5 cut(s) 78, 191, 260, 605, 615
BstDSI CCRYGG 1 cut(s) 347
BstKTI GATC 3 cut(s) 180, 713, 854
BstMAI GTCTC 5 cut(s) 138, 611, 616, 636, 770
BstMBI GATC 3 cut(s) 177, 710, 851
BstMCI CGRYCG 1 cut(s) 1012
BstMWI GCNNNNNNNGC 3 cut(s) 560, 799, 989
BstNI CCWGG 1 cut(s) 422
BstNSI RCATGY 1 cut(s) 964
BstSCI CCNGG 1 cut(s) 420
BstSFI CTRYAG 5 cut(s) 66, 156, 181, 867, 924
BstSLI GKGCMC 1 cut(s) 592
BstV1I GCAGC 3 cut(s) 173, 195, 677
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 2 cut(s) 177, 851
BstYI RGATCY 2 cut(s) 177, 851
BstZI CGGCCG 1 cut(s) 1009
BsuI GTATCC 1 cut(s) 749
BsuRI GGCC 3 cut(s) 283, 802, 1011
BtgI CCRYGG 1 cut(s) 347
BtsIMutI CAGTG 3 cut(s) 220, 268, 693
CaiI CAGNNNCTG 1 cut(s) 854
Cfr13I GGNCC 1 cut(s) 344
Csp6I GTAC 2 cut(s) 97, 444
CviAII CATG 8 cut(s) 139, 348, 387, 550, 565, 961, 997, 1069
CviQI GTAC 2 cut(s) 97, 444
DdeI CTNAG 5 cut(s) 78, 191, 260, 605, 615
DpnI GATC 3 cut(s) 179, 712, 853
DpnII GATC 3 cut(s) 177, 710, 851
EaeI YGGCCR 2 cut(s) 800, 1009
EagI CGGCCG 1 cut(s) 1009
Eam1104I CTCTTC 4 cut(s) 711, 773, 780, 1098
EarI CTCTTC 4 cut(s) 711, 773, 780, 1098
EclXI CGGCCG 1 cut(s) 1009
Eco130I CCWWGG 1 cut(s) 347
Eco24I GRGCYC 2 cut(s) 474, 919
Eco31I GGTCTC 1 cut(s) 770
Eco32I GATATC 1 cut(s) 229
Eco47I GGWCC 1 cut(s) 344
Eco52I CGGCCG 1 cut(s) 1009
Eco57I CTGAAG 1 cut(s) 716
EcoRII CCWGG 1 cut(s) 420
EcoRV GATATC 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 347
EcoT38I GRGCYC 2 cut(s) 474, 919
ErhI CCWWGG 1 cut(s) 347
FaeI CATG 8 cut(s) 142, 351, 390, 553, 568, 964, 1000, 1072
FatI CATG 8 cut(s) 138, 347, 386, 549, 564, 960, 996, 1068
FauNDI CATATG 2 cut(s) 53, 673
Fnu4HI GCNGC 5 cut(s) 162, 184, 281, 666, 803
FriOI GRGCYC 2 cut(s) 474, 919
Fsp4HI GCNGC 5 cut(s) 162, 184, 281, 666, 803
FspBI CTAG 2 cut(s) 621, 1095
GluI GCNGC 5 cut(s) 162, 184, 281, 666, 803
GsaI CCCAGC 1 cut(s) 386
HaeIII GGCC 3 cut(s) 283, 802, 1011
Hin1II CATG 8 cut(s) 142, 351, 390, 553, 568, 964, 1000, 1072
HinfI GANTC 2 cut(s) 509, 1003
HphI GGTGA 2 cut(s) 109, 1012
Hpy188I TCNGA 6 cut(s) 81, 92, 616, 715, 904, 1084
Hpy188III TCNNGA 2 cut(s) 506, 849
Hpy99I CGWCG 2 cut(s) 47, 1017
HpyAV CCTTC 2 cut(s) 269, 716
HpyCH4III ACNGT 4 cut(s) 215, 451, 688, 828
HpyF10VI GCNNNNNNNGC 3 cut(s) 560, 799, 989
HpyF3I CTNAG 5 cut(s) 78, 191, 260, 605, 615
Hsp92II CATG 8 cut(s) 142, 351, 390, 553, 568, 964, 1000, 1072
Kzo9I GATC 3 cut(s) 177, 710, 851
LmnI GCTCC 1 cut(s) 491
Lsp1109I GCAGC 3 cut(s) 173, 195, 677
LweI GCATC 1 cut(s) 677
MaeI CTAG 2 cut(s) 621, 1095
MaeIII GTNAC 3 cut(s) 73, 690, 1016
MalI GATC 3 cut(s) 179, 712, 853
MboI GATC 3 cut(s) 177, 710, 851
MboII GAAGA 8 cut(s) 40, 284, 491, 640, 709, 728, 760, 767
MflI RGATCY 2 cut(s) 177, 851
MhlI GDGCHC 3 cut(s) 474, 592, 919
MluCI AATT 9 cut(s) 84, 203, 243, 354, 412, 495, 701, 836, 972
MlyI GAGTC 1 cut(s) 503
MnlI CCTC 5 cut(s) 64, 73, 176, 269, 712
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 3 cut(s) 242, 371, 875
MslI CAYNNNNRTG 1 cut(s) 213
MspA1I CMGCKG 2 cut(s) 575, 805
MspR9I CCNGG 1 cut(s) 422
Mva1269I GAATGC 2 cut(s) 814, 1044
MvaI CCWGG 1 cut(s) 422
MwoI GCNNNNNNNGC 3 cut(s) 560, 799, 989
NcoI CCATGG 1 cut(s) 347
NdeI CATATG 2 cut(s) 53, 673
NdeII GATC 3 cut(s) 177, 710, 851
NlaIII CATG 8 cut(s) 142, 351, 390, 553, 568, 964, 1000, 1072
NlaIV GGNNCC 2 cut(s) 40, 591
NmeAIII GCCGAG 1 cut(s) 105
NspI RCATGY 1 cut(s) 964
PctI GAATGC 2 cut(s) 814, 1044
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 1 cut(s) 1003
PkrI GCNGC 5 cut(s) 163, 185, 282, 667, 804
PleI GAGTC 1 cut(s) 503
PpsI GAGTC 1 cut(s) 503
Psp6I CCWGG 1 cut(s) 420
PspFI CCCAGC 1 cut(s) 382
PspGI CCWGG 1 cut(s) 420
PspN4I GGNNCC 2 cut(s) 40, 591
PspPI GGNCC 1 cut(s) 344
PstI CTGCAG 2 cut(s) 70, 185
PstNI CAGNNNCTG 1 cut(s) 854
PsuI RGATCY 2 cut(s) 177, 851
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 2 cut(s) 98, 445
RsaNI GTAC 2 cut(s) 97, 444
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 3 cut(s) 242, 371, 875
SatI GCNGC 5 cut(s) 162, 184, 281, 666, 803
Sau3AI GATC 3 cut(s) 177, 710, 851
Sau96I GGNCC 1 cut(s) 344
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 1 cut(s) 422
SduI GDGCHC 3 cut(s) 474, 592, 919
SfaNI GCATC 1 cut(s) 677
SfcI CTRYAG 5 cut(s) 66, 156, 181, 867, 924
SinI GGWCC 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 9 cut(s) 84, 203, 243, 354, 412, 495, 701, 836, 972
SsiI CCGC 2 cut(s) 280, 803
SspMI CTAG 2 cut(s) 621, 1095
StyD4I CCNGG 1 cut(s) 420
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 4 cut(s) 215, 451, 688, 828
TaqII GACCGA 1 cut(s) 641
TasI AATT 9 cut(s) 84, 203, 243, 354, 412, 495, 701, 836, 972
TatI WGTACW 2 cut(s) 96, 443
TauI GCSGC 2 cut(s) 283, 805
TfiI GAWTC 1 cut(s) 1003
Tru1I TTAA 3 cut(s) 242, 371, 875
Tru9I TTAA 3 cut(s) 242, 371, 875
TscAI CASTG 3 cut(s) 220, 268, 693
TseI GCWGC 3 cut(s) 161, 183, 665
TspDTI ATGAA 5 cut(s) 40, 197, 216, 315, 612
TspRI CASTG 3 cut(s) 220, 268, 693
VpaK11BI GGWCC 1 cut(s) 344
XapI RAATTY 5 cut(s) 84, 203, 412, 701, 836
XceI RCATGY 1 cut(s) 964
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 2 cut(s) 621, 1095
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.