Rh6DG398900

Solute carrier family 35 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002838
Physical Location & Seq
Forward (+)
58891673 .. 58895017
3345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG398900.1

Sequence Viewer

Length: 1113 bp
ATGGGTTGGAAATACAACGCAGGATTGGGGTTGATTGGTGCCGTCGTCTTCATATGGGTCGCCTCTGCAGAGGTTACCCAGAGAATTTTCACAGAGTACAAACAGCCTTTTTCACTCACCTATCTCGGTGTGTCCCTCATGGTCGTCTATCTACCTATAGCAGCCCTCAAGGACTGGATCTGCAGCTTACTGAGAACAAATGAATTTCATCACAGTGCAGAAACAGATATCACAACTTCCTTAATTACTGATAAAGACCTCAGTGATCGAGAAGAAGGGCGCCCTGTAATGGATAAGAATGAAGTAGATGAGCCTTACTTTCTTGCAAAAAGTAATCAACTTGGTCCATGGGAAATTGCAAAATTTGGCTTAATACTTACTCCAGCATGGTTTATCACAGAGTATATGTCAAATTCTGCACTGGCAAATACTAGTGTTGCAAGTACAACTGTCCTAACTTCTACGTCGGGGCTCTTTACACTTTTGTTTGGAGCACTTCTTCGTCAGGACTCCATAAACATTCCAAAGATGGTTGCTGTTTTTATCAGCATGGCTGGTGTTGCCATGACCACAGCTGGAAAAACTTGGGCACCTGATGAACTGCCGAGCGTCTCTGAGACTAGAAAGCACTCAATAACAGGAGACATTTTCGGTCTTATGTCAGCAGCATCATATGGATTATTCACAGTGTTACTCAAGAAATTTGCTGGATCAGAAGAGGAAGGGGAAAAGGCTGATGTGCAAAAGCTATTCGGATACATTGGTCTCTTCACTCTTCTTGGTCTGTGGTGGCTTGTGTGGCCGCTGAATGCTATGGGGATTGAACCGTCTTTTGAATTTCCACCATCAGGATCTGTTGGGGAAGCTGTGCTGTTAAATGGCTTTGTGGGGAGTGTTCTTTCAGATTATTTTTGGGCTCTTTCTGTAGTTTGGACATCTCCATTAGTTGCAACTCTGGGCATGTCCTTGACAATTCCCCTTGCTATGGTTGCTGACATGGTGATTCATGGCCGTCGTTACTCTGCAATCTACATCTTTGGTTGCATTCAGGTTTTTGCAGGATTTGTCATGGCAAACCTTTCAGACAAGTTTTCTAGCAAGGAAGAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

370

Amino Acids

40.56

Weight (kDa)

4.9

Isoelectric Point (pI)

31.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 112 - 191 2.4e-06 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 38, 279, 589
AciI CCGC 1 cut(s) 803
AclWI GGATC 3 cut(s) 185, 718, 859
AcoI YGGCCR 2 cut(s) 800, 1009
AcsI RAATTY 6 cut(s) 84, 203, 362, 412, 701, 836
AcyI GRCGYC 1 cut(s) 280
AfaI GTAC 2 cut(s) 98, 445
AfiI CCNNNNNNNGG 3 cut(s) 289, 848, 985
AgsI TTSAA 2 cut(s) 824, 836
AhlI ACTAGT 1 cut(s) 431
AluBI AGCT 4 cut(s) 186, 575, 748, 866
AluI AGCT 4 cut(s) 186, 575, 748, 866
Alw21I GWGCWC 1 cut(s) 496
Alw26I GTCTC 4 cut(s) 611, 616, 636, 770
AlwI GGATC 3 cut(s) 185, 718, 859
AlwNI CAGNNNCTG 1 cut(s) 854
AoxI GGCC 2 cut(s) 800, 1009
ApeKI GCWGC 3 cut(s) 161, 183, 665
ApoI RAATTY 6 cut(s) 84, 203, 362, 412, 701, 836
AspLEI GCGC 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 344
AsuHPI GGTGA 2 cut(s) 109, 1012
AvaII GGWCC 1 cut(s) 344
BaeGI GKGCMC 1 cut(s) 592
BaeI ACNNNNGTAYC 2 cut(s) 748, 781
BanI GGYRCC 3 cut(s) 38, 279, 589
BanII GRGCYC 2 cut(s) 474, 919
BbsI GAAGAC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 496
BbvI GCAGC 3 cut(s) 173, 195, 677
BccI CCATC 2 cut(s) 523, 853
BceAI ACGGC 2 cut(s) 26, 996
BciVI GTATCC 1 cut(s) 749
BcoDI GTCTC 4 cut(s) 611, 616, 636, 770
BcuI ACTAGT 1 cut(s) 431
BfaI CTAG 3 cut(s) 432, 621, 1095
BfmI CTRYAG 4 cut(s) 66, 156, 181, 924
BfoI RGCGCY 1 cut(s) 283
BfuI GTATCC 1 cut(s) 749
BisI GCNGC 4 cut(s) 162, 184, 666, 803
BlsI GCNGC 4 cut(s) 163, 185, 667, 804
Bme18I GGWCC 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 344
BmiI GGNNCC 3 cut(s) 40, 281, 591
BmsI GCATC 1 cut(s) 677
BpiI GAAGAC 1 cut(s) 40
BpmI CTGGAG 1 cut(s) 366
BpuEI CTTGAG 2 cut(s) 152, 680
BsaHI GRCGYC 1 cut(s) 280
BsaI GGTCTC 1 cut(s) 770
BsaJI CCNNGG 1 cut(s) 347
Bsc4I CCNNNNNNNGG 3 cut(s) 289, 848, 985
Bse1I ACTGG 2 cut(s) 179, 426
BseDI CCNNGG 1 cut(s) 347
BseLI CCNNNNNNNGG 3 cut(s) 289, 848, 985
BseMII CTCAG 3 cut(s) 182, 274, 606
BseNI ACTGG 2 cut(s) 179, 426
BseSI GKGCMC 1 cut(s) 592
BseXI GCAGC 3 cut(s) 173, 195, 677
BsgI GTGCAG 2 cut(s) 237, 402
BshFI GGCC 2 cut(s) 802, 1011
BshNI GGYRCC 3 cut(s) 38, 279, 589
BsiHKAI GWGCWC 1 cut(s) 496
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 3 cut(s) 289, 848, 985
BsmAI GTCTC 4 cut(s) 611, 616, 636, 770
BsmBI CGTCTC 1 cut(s) 616
BsmFI GGGAC 1 cut(s) 118
BsmI GAATGC 2 cut(s) 814, 1044
BsnI GGCC 2 cut(s) 802, 1011
Bso31I GGTCTC 1 cut(s) 770
Bsp1286I GDGCHC 4 cut(s) 474, 496, 592, 919
Bsp143I GATC 4 cut(s) 177, 265, 710, 851
Bsp19I CCATGG 1 cut(s) 347
BspACI CCGC 1 cut(s) 803
BspANI GGCC 2 cut(s) 802, 1011
BspCNI CTCAG 3 cut(s) 183, 273, 607
BspLI GGNNCC 3 cut(s) 40, 281, 591
BspMAI CTGCAG 2 cut(s) 70, 185
BspPI GGATC 3 cut(s) 185, 718, 859
BspT107I GGYRCC 3 cut(s) 38, 279, 589
BspTNI GGTCTC 1 cut(s) 770
BsrI ACTGG 2 cut(s) 179, 426
BssECI CCNNGG 1 cut(s) 347
BssMI GATC 4 cut(s) 177, 265, 710, 851
BssNI GRCGYC 1 cut(s) 280
BssT1I CCWWGG 1 cut(s) 347
Bst4CI ACNGT 4 cut(s) 215, 451, 688, 828
Bst6I CTCTTC 4 cut(s) 711, 773, 780, 1098
BstACI GRCGYC 1 cut(s) 280
BstDEI CTNAG 3 cut(s) 191, 260, 615
BstDSI CCRYGG 1 cut(s) 347
BstEII GGTNACC 1 cut(s) 73
BstH2I RGCGCY 1 cut(s) 283
BstHHI GCGC 1 cut(s) 282
BstKTI GATC 4 cut(s) 180, 268, 713, 854
BstMAI GTCTC 4 cut(s) 611, 616, 636, 770
BstMBI GATC 4 cut(s) 177, 265, 710, 851
BstMWI GCNNNNNNNGC 3 cut(s) 560, 799, 989
BstNSI RCATGY 1 cut(s) 964
BstPI GGTNACC 1 cut(s) 73
BstSFI CTRYAG 4 cut(s) 66, 156, 181, 924
BstSLI GKGCMC 1 cut(s) 592
BstV1I GCAGC 3 cut(s) 173, 195, 677
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 2 cut(s) 177, 851
BstYI RGATCY 2 cut(s) 177, 851
BsuI GTATCC 1 cut(s) 749
BsuRI GGCC 2 cut(s) 802, 1011
BtgI CCRYGG 1 cut(s) 347
BtsIMutI CAGTG 4 cut(s) 220, 268, 419, 693
CaiI CAGNNNCTG 1 cut(s) 854
CfoI GCGC 1 cut(s) 282
Cfr13I GGNCC 1 cut(s) 344
CseI GACGC 1 cut(s) 598
Csp6I GTAC 2 cut(s) 97, 444
CviAII CATG 9 cut(s) 139, 348, 387, 550, 565, 961, 997, 1007, 1069
CviQI GTAC 2 cut(s) 97, 444
DdeI CTNAG 3 cut(s) 191, 260, 615
DinI GGCGCC 1 cut(s) 281
DpnI GATC 4 cut(s) 179, 267, 712, 853
DpnII GATC 4 cut(s) 177, 265, 710, 851
EaeI YGGCCR 2 cut(s) 800, 1009
Eam1104I CTCTTC 4 cut(s) 711, 773, 780, 1098
EarI CTCTTC 4 cut(s) 711, 773, 780, 1098
Eco130I CCWWGG 1 cut(s) 347
Eco24I GRGCYC 2 cut(s) 474, 919
Eco31I GGTCTC 1 cut(s) 770
Eco32I GATATC 1 cut(s) 229
Eco47I GGWCC 1 cut(s) 344
Eco91I GGTNACC 1 cut(s) 73
EcoO65I GGTNACC 1 cut(s) 73
EcoRV GATATC 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 347
EcoT38I GRGCYC 2 cut(s) 474, 919
EgeI GGCGCC 1 cut(s) 281
EheI GGCGCC 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 347
Esp3I CGTCTC 1 cut(s) 616
FaeI CATG 9 cut(s) 142, 351, 390, 553, 568, 964, 1000, 1010, 1072
FaqI GGGAC 1 cut(s) 118
FatI CATG 9 cut(s) 138, 347, 386, 549, 564, 960, 996, 1006, 1068
FauNDI CATATG 2 cut(s) 53, 673
Fnu4HI GCNGC 4 cut(s) 162, 184, 666, 803
FriOI GRGCYC 2 cut(s) 474, 919
Fsp4HI GCNGC 4 cut(s) 162, 184, 666, 803
FspBI CTAG 3 cut(s) 432, 621, 1095
GlaI GCGC 1 cut(s) 281
GluI GCNGC 4 cut(s) 162, 184, 666, 803
GsuI CTGGAG 1 cut(s) 366
HaeII RGCGCY 1 cut(s) 283
HaeIII GGCC 2 cut(s) 802, 1011
HgaI GACGC 1 cut(s) 598
HhaI GCGC 1 cut(s) 282
Hin1I GRCGYC 1 cut(s) 280
Hin1II CATG 9 cut(s) 142, 351, 390, 553, 568, 964, 1000, 1010, 1072
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HinfI GANTC 2 cut(s) 509, 1003
HphI GGTGA 2 cut(s) 109, 1012
Hpy188I TCNGA 5 cut(s) 616, 715, 755, 904, 1084
Hpy188III TCNNGA 4 cut(s) 269, 506, 697, 849
Hpy99I CGWCG 3 cut(s) 47, 469, 1017
HpyAV CCTTC 2 cut(s) 269, 716
HpyCH4III ACNGT 4 cut(s) 215, 451, 688, 828
HpyCH4IV ACGT 1 cut(s) 464
HpyF10VI GCNNNNNNNGC 3 cut(s) 560, 799, 989
HpyF3I CTNAG 3 cut(s) 191, 260, 615
HpySE526I ACGT 1 cut(s) 464
Hsp92I GRCGYC 1 cut(s) 280
Hsp92II CATG 9 cut(s) 142, 351, 390, 553, 568, 964, 1000, 1010, 1072
HspAI GCGC 1 cut(s) 280
KasI GGCGCC 1 cut(s) 279
Kzo9I GATC 4 cut(s) 177, 265, 710, 851
LmnI GCTCC 1 cut(s) 491
Lsp1109I GCAGC 3 cut(s) 173, 195, 677
LweI GCATC 1 cut(s) 677
MaeI CTAG 3 cut(s) 432, 621, 1095
MaeII ACGT 1 cut(s) 464
MaeIII GTNAC 3 cut(s) 73, 690, 1016
MalI GATC 4 cut(s) 179, 267, 712, 853
MboI GATC 4 cut(s) 177, 265, 710, 851
MboII GAAGA 6 cut(s) 40, 284, 491, 728, 760, 767
MflI RGATCY 2 cut(s) 177, 851
MhlI GDGCHC 4 cut(s) 474, 496, 592, 919
MluCI AATT 9 cut(s) 84, 203, 243, 354, 362, 412, 701, 836, 972
Mly113I GGCGCC 1 cut(s) 280
MlyI GAGTC 1 cut(s) 503
MnlI CCTC 6 cut(s) 64, 73, 146, 176, 269, 712
MseI TTAA 3 cut(s) 242, 371, 875
MslI CAYNNNNRTG 1 cut(s) 213
MspA1I CMGCKG 2 cut(s) 575, 805
Mva1269I GAATGC 2 cut(s) 814, 1044
MwoI GCNNNNNNNGC 3 cut(s) 560, 799, 989
NarI GGCGCC 1 cut(s) 280
NcoI CCATGG 1 cut(s) 347
NdeI CATATG 2 cut(s) 53, 673
NdeII GATC 4 cut(s) 177, 265, 710, 851
NlaIII CATG 9 cut(s) 142, 351, 390, 553, 568, 964, 1000, 1010, 1072
NlaIV GGNNCC 3 cut(s) 40, 281, 591
NmeAIII GCCGAG 1 cut(s) 630
NspI RCATGY 1 cut(s) 964
PctI GAATGC 2 cut(s) 814, 1044
PfeI GAWTC 1 cut(s) 1003
PkrI GCNGC 4 cut(s) 163, 185, 667, 804
PleI GAGTC 1 cut(s) 503
PluTI GGCGCC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 503
PspEI GGTNACC 1 cut(s) 73
PspN4I GGNNCC 3 cut(s) 40, 281, 591
PspPI GGNCC 1 cut(s) 344
PstI CTGCAG 2 cut(s) 70, 185
PstNI CAGNNNCTG 1 cut(s) 854
PsuI RGATCY 2 cut(s) 177, 851
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 2 cut(s) 98, 445
RsaNI GTAC 2 cut(s) 97, 444
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 3 cut(s) 242, 371, 875
SatI GCNGC 4 cut(s) 162, 184, 666, 803
Sau3AI GATC 4 cut(s) 177, 265, 710, 851
Sau96I GGNCC 1 cut(s) 344
SchI GAGTC 1 cut(s) 503
SduI GDGCHC 4 cut(s) 474, 496, 592, 919
SfaNI GCATC 1 cut(s) 677
SfcI CTRYAG 4 cut(s) 66, 156, 181, 924
SfoI GGCGCC 1 cut(s) 281
SinI GGWCC 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 2 cut(s) 167, 695
SmoI CTYRAG 2 cut(s) 167, 695
SpeI ACTAGT 1 cut(s) 431
Sse9I AATT 9 cut(s) 84, 203, 243, 354, 362, 412, 701, 836, 972
SsiI CCGC 1 cut(s) 803
SspDI GGCGCC 1 cut(s) 279
SspMI CTAG 3 cut(s) 432, 621, 1095
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 4 cut(s) 215, 451, 688, 828
TaiI ACGT 1 cut(s) 467
TaqI TCGA 1 cut(s) 268
TaqII GACCGA 1 cut(s) 641
TasI AATT 9 cut(s) 84, 203, 243, 354, 362, 412, 701, 836, 972
TatI WGTACW 2 cut(s) 96, 443
TauI GCSGC 1 cut(s) 805
TfiI GAWTC 1 cut(s) 1003
Tru1I TTAA 3 cut(s) 242, 371, 875
Tru9I TTAA 3 cut(s) 242, 371, 875
TscAI CASTG 4 cut(s) 220, 268, 426, 693
TseI GCWGC 3 cut(s) 161, 183, 665
TspDTI ATGAA 6 cut(s) 40, 197, 216, 315, 612, 995
TspRI CASTG 4 cut(s) 220, 268, 426, 693
VpaK11BI GGWCC 1 cut(s) 344
XapI RAATTY 6 cut(s) 84, 203, 362, 412, 701, 836
XceI RCATGY 1 cut(s) 964
XspI CTAG 3 cut(s) 432, 621, 1095
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.