Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000319.1

Orthogroup ID

OG0002838

Physical Location & Seq

Genomic Coordinates Reverse (-)

6403 .. 9774

Gene Structure 3372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000319.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atgggttggagatacagagctgggttgcttctaattggtgctgtggttatcatctgggtgacctctgcagaagtcacacaagatatctatgaaaagtataagcagccatttgcagtaacatatcttggagcttctcttatggtagtgtacctcccaatagctttccttaaggactggttgtgtaatttacttaaacgtcgctcttctaaaagtggcaaaaatgcagaaagcatgaatgagtattctgctggatttagttcaccactaaaacacaatggagtgcagaaagattttgaattggaaattcataccttgtccagaaaagacagtgatgcagacctttcaccttgtgcagaagaaaggcctttggtttctaaactcaaagacaatttaaatgtgctgaaacatgacagagagctcacaccaagggaaattgctacttatggattttaccttgcccctctttggttttttacagagtattttgcaaatgctgctctcgcgcgtacaagtgttgcaagtacaacagtcttatcctcaacttcaggactctttacactctttattggtgcattcttgggccaagattctttaaatatagcaaaagtggtggctgtctttgtcagcatggcgggtgtagccatgacaactatgggaaaaacgtgggctacagatgagtcacaatcgagtgcctccaatgggaaacactctctcgttggagatattttcggcctttcatcagctatgtcatacggtctatttacagtccttcttaagaaatttggtggtgaaggaggagagaaggctgacgtgcaaaaattgtttgggtatattggattgtttacactcgtagcattatggtggctggttttgccattgacagcaatgggcattgaaccaaagttcatgattcctcactctgctaaattagatgaacttgttcttgccaatggctttgtcggaagtgtactttctgactacttttgggcactatgtgttgtgtggacaactccactggtggccactctgggcatgtcgctcaccatccccctagctatggtggctgacatgtttatccatggtcgtcattattcggcagtttacattcttggctctgtacaggtatttgcaggatttgtaatagctaatctttcagattggttctcaaagaagttggggttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

394

Amino Acids

43.21

Weight (kDa)

7.69

Isoelectric Point (pI)

28.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32140
fragaria_vesca	FvH4_2g28780 FvH4_2g28780 FvH4_2g28780 FvH4_2g41280 FvH4_2g41280
malus_domestica	MD08G1052500.v1.1 MD08G1157100.v1.1 MD15G1043000.v1.1 MD15G1128200.v1.1
prunus_persica	Prupe.1G396300_v2.0.a1 Prupe.1G396300_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1
pyrus_communis	pycom08g04380 pycom08g12940 pycom15g11540
rosa_chinensis	RchiOBHm_Chr6g0297541 RchiOBHm_Chr6g0299221
rosa_laevigata	RLG00000011452 RLG00000011585
rosa_multiflora	Rmu_ssc0000319.1_g000003
rosa_roxburghii	Rroxscaffold_7G00168900 Rroxscaffold_7G00170380
rosa_rugosa	Rorug06G0273300 Rorug06G0273400 Rorug06G0286300
rosa_samantha	Rh6AG384400 Rh6AG397500 Rh6BG392500 Rh6BG406100 Rh6CG398400 Rh6CG412200 Rh6DG384900 Rh6DG398900
rosa_wichuraiana	Rw6G033480 Rw6G034800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	503, 505
AciI	CCGC	1 cut(s)	632
AcoI	YGGCCR	1 cut(s)	1020
AcsI	RAATTY	2 cut(s)	303, 779
AcuI	CTGAAG	1 cut(s)	528
AdeI	CACNNNGTG	2 cut(s)	350, 995
AfaI	GTAC	5 cut(s)	149, 508, 523, 969, 1119
AfiI	CCNNNNNNNGG	3 cut(s)	465, 699, 1057
AflII	CTTAAG	2 cut(s)	167, 773
AflIII	ACRYGT	1 cut(s)	1068
AgsI	TTSAA	2 cut(s)	296, 896
AjiI	CACGTC	1 cut(s)	811
AluBI	AGCT	7 cut(s)	20, 131, 161, 418, 743, 1055, 1145
AluI	AGCT	7 cut(s)	20, 131, 161, 418, 743, 1055, 1145
Alw21I	GWGCWC	1 cut(s)	420
AoxI	GGCC	4 cut(s)	362, 580, 730, 1020
ApeKI	GCWGC	2 cut(s)	103, 494
ApoI	RAATTY	2 cut(s)	303, 779
Asp700I	GAANNNNTTC	1 cut(s)	939
AspLEI	GCGC	1 cut(s)	505
AspS9I	GGNCC	1 cut(s)	580
AsuHPI	GGTGA	5 cut(s)	70, 252, 336, 800, 1033
BaeGI	GKGCMC	1 cut(s)	991
BalI	TGGCCA	1 cut(s)	1022
BanII	GRGCYC	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	2 cut(s)	115, 481
BccI	CCATC	1 cut(s)	1052
BfaI	CTAG	1 cut(s)	1052
BfmI	CTRYAG	2 cut(s)	66, 669
BfrI	CTTAAG	2 cut(s)	167, 773
BisI	GCNGC	2 cut(s)	104, 495
BlsI	GCNGC	2 cut(s)	105, 496
BmgBI	CACGTC	1 cut(s)	811
BmgT120I	GGNCC	1 cut(s)	580
BmsI	GCATC	1 cut(s)	322
BsaJI	CCNNGG	2 cut(s)	425, 1078
Bsc4I	CCNNNNNNNGG	3 cut(s)	465, 699, 1057
Bse1I	ACTGG	2 cut(s)	179, 1020
Bse3DI	GCAATG	1 cut(s)	891
BseDI	CCNNGG	2 cut(s)	425, 1078
BseGI	GGATG	1 cut(s)	1044
BseLI	CCNNNNNNNGG	3 cut(s)	465, 699, 1057
BseMI	GCAATG	1 cut(s)	891
BseNI	ACTGG	2 cut(s)	179, 1020
BseRI	GAGGAG	1 cut(s)	810
BseSI	GKGCMC	1 cut(s)	991
BseXI	GCAGC	2 cut(s)	115, 481
BseYI	CCCAGC	1 cut(s)	20
BsgI	GTGCAG	2 cut(s)	302, 372
Bsh1236I	CGCG	2 cut(s)	503, 505
BshFI	GGCC	4 cut(s)	364, 582, 732, 1022
BsiHKAI	GWGCWC	1 cut(s)	420
BslI	CCNNNNNNNGG	3 cut(s)	465, 699, 1057
BsmI	GAATGC	1 cut(s)	572
BsnI	GGCC	4 cut(s)	364, 582, 732, 1022
Bsp1286I	GDGCHC	2 cut(s)	420, 991
Bsp1407I	TGTACA	1 cut(s)	1117
Bsp19I	CCATGG	1 cut(s)	1078
BspACI	CCGC	1 cut(s)	632
BspANI	GGCC	4 cut(s)	364, 582, 732, 1022
BspFNI	CGCG	2 cut(s)	503, 505
BspHI	TCATGA	1 cut(s)	906
BspMAI	CTGCAG	1 cut(s)	70
BspQI	GCTCTTC	1 cut(s)	208
BspTI	CTTAAG	2 cut(s)	167, 773
BsrDI	GCAATG	1 cut(s)	891
BsrGI	TGTACA	1 cut(s)	1117
BsrI	ACTGG	2 cut(s)	179, 1020
BssECI	CCNNGG	2 cut(s)	425, 1078
BssT1I	CCWWGG	2 cut(s)	425, 1078
Bst4CI	ACNGT	4 cut(s)	329, 529, 755, 766
Bst6I	CTCTTC	1 cut(s)	208
BstAFI	CTTAAG	2 cut(s)	167, 773
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstAUI	TGTACA	1 cut(s)	1117
BstDSI	CCRYGG	1 cut(s)	1078
BstEII	GGTNACC	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	1044
BstFNI	CGCG	2 cut(s)	503, 505
BstHHI	GCGC	1 cut(s)	505
BstMWI	GCNNNNNNNGC	5 cut(s)	494, 500, 638, 871, 1061
BstNSI	RCATGY	2 cut(s)	1036, 1072
BstPI	GGTNACC	1 cut(s)	58
BstSFI	CTRYAG	2 cut(s)	66, 669
BstSLI	GKGCMC	1 cut(s)	991
BstUI	CGCG	2 cut(s)	503, 505
BstV1I	GCAGC	2 cut(s)	115, 481
BsuRI	GGCC	4 cut(s)	364, 582, 732, 1022
BtgI	CCRYGG	1 cut(s)	1078
BtrI	CACGTC	1 cut(s)	811
BtsCI	GGATG	1 cut(s)	1044
BtsIMutI	CAGTG	2 cut(s)	334, 1013
CciI	TCATGA	1 cut(s)	906
CfoI	GCGC	1 cut(s)	505
Cfr13I	GGNCC	1 cut(s)	580
Csp6I	GTAC	5 cut(s)	148, 507, 522, 968, 1118
CspCI	CAANNNNNGTGG	2 cut(s)	591, 626
CviAII	CATG	8 cut(s)	232, 407, 628, 643, 907, 1033, 1069, 1079
CviQI	GTAC	5 cut(s)	148, 507, 522, 968, 1118
DraI	TTTAAA	2 cut(s)	393, 594
DraIII	CACNNNGTG	2 cut(s)	350, 995
EaeI	YGGCCR	1 cut(s)	1020
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
Ecl136II	GAGCTC	1 cut(s)	418
Eco130I	CCWWGG	2 cut(s)	425, 1078
Eco147I	AGGCCT	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	420
Eco32I	GATATC	1 cut(s)	85
Eco53kI	GAGCTC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	528
Eco91I	GGTNACC	1 cut(s)	58
EcoICRI	GAGCTC	1 cut(s)	418
EcoO65I	GGTNACC	1 cut(s)	58
EcoRV	GATATC	1 cut(s)	85
EcoT14I	CCWWGG	2 cut(s)	425, 1078
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	2 cut(s)	425, 1078
FaeI	CATG	8 cut(s)	235, 410, 631, 646, 910, 1036, 1072, 1082
FatI	CATG	8 cut(s)	231, 406, 627, 642, 906, 1032, 1068, 1078
FauI	CCCGC	1 cut(s)	625
Fnu4HI	GCNGC	2 cut(s)	104, 495
FokI	GGATG	1 cut(s)	1031
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	2 cut(s)	104, 495
FspBI	CTAG	1 cut(s)	1052
GlaI	GCGC	1 cut(s)	504
GluI	GCNGC	2 cut(s)	104, 495
GsaI	CCCAGC	1 cut(s)	24
HaeIII	GGCC	4 cut(s)	364, 582, 732, 1022
HhaI	GCGC	1 cut(s)	505
Hin1II	CATG	8 cut(s)	235, 410, 631, 646, 910, 1036, 1072, 1082
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HinfI	GANTC	4 cut(s)	549, 587, 677, 910
HphI	GGTGA	5 cut(s)	70, 252, 336, 800, 1033
Hpy166II	GTNNAC	6 cut(s)	148, 260, 843, 968, 1005, 1102
Hpy188I	TCNGA	3 cut(s)	962, 976, 1156
Hpy188III	TCNNGA	3 cut(s)	318, 546, 907
Hpy8I	GTNNAC	6 cut(s)	148, 260, 843, 968, 1005, 1102
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	3 cut(s)	779, 785, 796
HpyCH4III	ACNGT	4 cut(s)	329, 529, 755, 766
HpyCH4IV	ACGT	3 cut(s)	196, 662, 810
HpyF10VI	GCNNNNNNNGC	5 cut(s)	494, 500, 638, 871, 1061
HpySE526I	ACGT	3 cut(s)	196, 662, 810
Hsp92II	CATG	8 cut(s)	235, 410, 631, 646, 910, 1036, 1072, 1082
HspAI	GCGC	1 cut(s)	503
LguI	GCTCTTC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	128
Lsp1109I	GCAGC	2 cut(s)	115, 481
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	1052
MaeII	ACGT	3 cut(s)	196, 662, 810
MaeIII	GTNAC	4 cut(s)	58, 73, 115, 678
MboII	GAAGA	2 cut(s)	195, 368
MhlI	GDGCHC	2 cut(s)	420, 991
MlsI	TGGCCA	1 cut(s)	1022
MluCI	AATT	9 cut(s)	33, 184, 296, 303, 388, 432, 779, 818, 926
MluNI	TGGCCA	1 cut(s)	1022
MlyI	GAGTC	2 cut(s)	543, 686
MmeI	TCCRAC	2 cut(s)	697, 940
MnlI	CCTC	7 cut(s)	73, 161, 471, 547, 703, 788, 924
Mox20I	TGGCCA	1 cut(s)	1022
MroXI	GAANNNNTTC	1 cut(s)	939
MscI	TGGCCA	1 cut(s)	1022
MseI	TTAA	5 cut(s)	168, 192, 392, 593, 774
MslI	CAYNNNNRTG	2 cut(s)	56, 859
Msp20I	TGGCCA	1 cut(s)	1022
MspCI	CTTAAG	2 cut(s)	167, 773
Mva1269I	GAATGC	1 cut(s)	572
MvnI	CGCG	2 cut(s)	503, 505
MwoI	GCNNNNNNNGC	5 cut(s)	494, 500, 638, 871, 1061
NcoI	CCATGG	1 cut(s)	1078
NlaIII	CATG	8 cut(s)	235, 410, 631, 646, 910, 1036, 1072, 1082
NmuCI	GTSAC	3 cut(s)	58, 73, 678
NspI	RCATGY	2 cut(s)	1036, 1072
PagI	TCATGA	1 cut(s)	906
PceI	AGGCCT	1 cut(s)	364
PciI	ACATGT	1 cut(s)	1068
PciSI	GCTCTTC	1 cut(s)	208
PctI	GAATGC	1 cut(s)	572
PdmI	GAANNNNTTC	1 cut(s)	939
PfeI	GAWTC	2 cut(s)	587, 910
PkrI	GCNGC	2 cut(s)	105, 496
PleI	GAGTC	2 cut(s)	543, 685
PpsI	GAGTC	2 cut(s)	543, 685
PscI	ACATGT	1 cut(s)	1068
Psp124BI	GAGCTC	1 cut(s)	420
PspEI	GGTNACC	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	20
PspPI	GGNCC	1 cut(s)	580
PstI	CTGCAG	1 cut(s)	70
RsaI	GTAC	5 cut(s)	149, 508, 523, 969, 1119
RsaNI	GTAC	5 cut(s)	148, 507, 522, 968, 1118
RseI	CAYNNNNRTG	2 cut(s)	56, 859
SacI	GAGCTC	1 cut(s)	420
SapI	GCTCTTC	1 cut(s)	208
SaqAI	TTAA	5 cut(s)	168, 192, 392, 593, 774
SatI	GCNGC	2 cut(s)	104, 495
Sau96I	GGNCC	1 cut(s)	580
SchI	GAGTC	2 cut(s)	543, 686
SduI	GDGCHC	2 cut(s)	420, 991
SfaNI	GCATC	1 cut(s)	322
SfcI	CTRYAG	2 cut(s)	66, 669
SmiI	ATTTAAAT	1 cut(s)	393
SmiMI	CAYNNNNRTG	2 cut(s)	56, 859
SmlI	CTYRAG	2 cut(s)	167, 773
SmoI	CTYRAG	2 cut(s)	167, 773
Sse9I	AATT	9 cut(s)	33, 184, 296, 303, 388, 432, 779, 818, 926
SseBI	AGGCCT	1 cut(s)	364
SsiI	CCGC	1 cut(s)	632
SspMI	CTAG	1 cut(s)	1052
SstI	GAGCTC	1 cut(s)	420
StuI	AGGCCT	1 cut(s)	364
StyI	CCWWGG	2 cut(s)	425, 1078
SwaI	ATTTAAAT	1 cut(s)	393
TaaI	ACNGT	4 cut(s)	329, 529, 755, 766
TaiI	ACGT	3 cut(s)	199, 665, 813
TaqI	TCGA	1 cut(s)	686
TasI	AATT	9 cut(s)	33, 184, 296, 303, 388, 432, 779, 818, 926
TatI	WGTACW	3 cut(s)	521, 967, 1117
TfiI	GAWTC	2 cut(s)	587, 910
Tru1I	TTAA	5 cut(s)	168, 192, 392, 593, 774
Tru9I	TTAA	5 cut(s)	168, 192, 392, 593, 774
TscAI	CASTG	2 cut(s)	334, 1020
TseFI	GTSAC	3 cut(s)	58, 73, 678
TseI	GCWGC	2 cut(s)	103, 494
Tsp45I	GTSAC	3 cut(s)	58, 73, 678
TspDTI	ATGAA	6 cut(s)	105, 248, 296, 726, 895, 948
TspRI	CASTG	2 cut(s)	334, 1020
Vha464I	CTTAAG	2 cut(s)	167, 773
XapI	RAATTY	2 cut(s)	303, 779
XceI	RCATGY	2 cut(s)	1036, 1072
XcmI	CCANNNNNNNNNTGG	1 cut(s)	649
XmnI	GAANNNNTTC	1 cut(s)	939
XspI	CTAG	1 cut(s)	1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.