Rh6BG406100

Solute carrier family 35 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002838
Physical Location & Seq
Forward (+)
63313603 .. 63316000
2398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG406100.1

Sequence Viewer

Length: 975 bp
ATGGTCGTCTATCTACCTATAGCAGCCCTCAAGGACTGGATCTGCAGCTTACTGAGAACAAATGAATTTCATCACAGTGCAGAAACAGATATCACAACTTCCTTAATTACTGATAAAGACCTCAGTGATCGAGAAGAAGGGCGCCCTGTAATGGATAAGAATGAAGTAGATGAGCCTTACTTTCTTGCAAAAAGTAATCAACTTGGTCCATGGGAAATTGCAAAATTTGGCTTAATACTTACTCCAGCATGGTTTATCACAGAGTATATGTCAAATTCTGCACTGGCAAATACTAGTGTTGCAAGTACAACTGTCCTAACTTCTACGTCGGGGCTCTTTACACTTTTGTTTGGAGCACTTCTTCGTCAGGACTCCATAAACATTCCAAAGATGGTTGCTGTTTTTATCAGCATGGCTGGTGTTGCCATGACCACAGCTGGAAAAACTTGGGCACCTGATGAACTGCCGAGCGTCTCTGAGACTAGAAAGCACTCAATAACAGGAGACATTTTCGGTCTTGTGTCAGCAGCATCATATGGATTATTCACAGTGTTACTCAAGAAATTTGCTGGATCAGAAGAGGAAGGGGATAAGGCTGATGTGCAAAAGCTATTCGGATACATTGGTCTCTTCACTCTTCTTGGTCTGTGGTGGCTTGTGTGGCCGCTGAATGCTATGGGGATTGAACCGTCTTTTGAATTTCCACCATCAGGATCTGTTGGGGAAGCTGTGCTGTTAAATGGCTTTGTGGGGAGTGTTCTTTCAGATTATTTTTGGGCTCTTTCTGTAGTTTGGACATCTCCATTAGTTGCAACTCTGGGCATGTCCTTGACAATTCCCCTTGCTATGGTTGCTGACATGGTGATTCATGGCCGTCGTTACTCTGCAATCTACATCTTTGGTTGCATTCAGGTTTTTGCAGGATTTGTCATGGCAAACCTTTCAGACAAGTTTTCTAGCAAGGAAGAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

324

Amino Acids

35.4

Weight (kDa)

4.77

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 66 - 145 1.9e-06 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 141, 451
AciI CCGC 1 cut(s) 665
AclWI GGATC 3 cut(s) 47, 580, 721
AcoI YGGCCR 2 cut(s) 662, 871
AcsI RAATTY 5 cut(s) 65, 224, 274, 563, 698
AcyI GRCGYC 1 cut(s) 142
AfaI GTAC 1 cut(s) 307
AfiI CCNNNNNNNGG 3 cut(s) 151, 710, 847
AgsI TTSAA 2 cut(s) 686, 698
AhlI ACTAGT 1 cut(s) 293
AluBI AGCT 4 cut(s) 48, 437, 610, 728
AluI AGCT 4 cut(s) 48, 437, 610, 728
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 4 cut(s) 473, 478, 498, 632
AlwI GGATC 3 cut(s) 47, 580, 721
AlwNI CAGNNNCTG 1 cut(s) 716
AoxI GGCC 2 cut(s) 662, 871
ApeKI GCWGC 3 cut(s) 23, 45, 527
ApoI RAATTY 5 cut(s) 65, 224, 274, 563, 698
AspLEI GCGC 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 874
AvaII GGWCC 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 454
BaeI ACNNNNGTAYC 2 cut(s) 610, 643
BanI GGYRCC 2 cut(s) 141, 451
BanII GRGCYC 2 cut(s) 336, 781
Bbv12I GWGCWC 1 cut(s) 358
BbvI GCAGC 3 cut(s) 35, 57, 539
BccI CCATC 2 cut(s) 385, 715
BceAI ACGGC 1 cut(s) 858
BciVI GTATCC 1 cut(s) 611
BcoDI GTCTC 4 cut(s) 473, 478, 498, 632
BcuI ACTAGT 1 cut(s) 293
BfaI CTAG 3 cut(s) 294, 483, 957
BfmI CTRYAG 3 cut(s) 18, 43, 786
BfoI RGCGCY 1 cut(s) 145
BfuI GTATCC 1 cut(s) 611
BisI GCNGC 4 cut(s) 24, 46, 528, 665
BlsI GCNGC 4 cut(s) 25, 47, 529, 666
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 2 cut(s) 143, 453
BmsI GCATC 1 cut(s) 539
BpmI CTGGAG 1 cut(s) 228
BpuEI CTTGAG 2 cut(s) 14, 542
BsaHI GRCGYC 1 cut(s) 142
BsaI GGTCTC 1 cut(s) 632
BsaJI CCNNGG 1 cut(s) 209
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 710, 847
Bse1I ACTGG 2 cut(s) 41, 288
BseDI CCNNGG 1 cut(s) 209
BseLI CCNNNNNNNGG 3 cut(s) 151, 710, 847
BseMII CTCAG 3 cut(s) 44, 136, 468
BseNI ACTGG 2 cut(s) 41, 288
BseSI GKGCMC 1 cut(s) 454
BseXI GCAGC 3 cut(s) 35, 57, 539
BsgI GTGCAG 2 cut(s) 99, 264
BshFI GGCC 2 cut(s) 664, 873
BshNI GGYRCC 2 cut(s) 141, 451
BsiHKAI GWGCWC 1 cut(s) 358
BslI CCNNNNNNNGG 3 cut(s) 151, 710, 847
BsmAI GTCTC 4 cut(s) 473, 478, 498, 632
BsmBI CGTCTC 1 cut(s) 478
BsmI GAATGC 2 cut(s) 676, 906
BsnI GGCC 2 cut(s) 664, 873
Bso31I GGTCTC 1 cut(s) 632
Bsp1286I GDGCHC 4 cut(s) 336, 358, 454, 781
Bsp143I GATC 4 cut(s) 39, 127, 572, 713
Bsp19I CCATGG 1 cut(s) 209
BspACI CCGC 1 cut(s) 665
BspANI GGCC 2 cut(s) 664, 873
BspCNI CTCAG 3 cut(s) 45, 135, 469
BspLI GGNNCC 2 cut(s) 143, 453
BspMAI CTGCAG 1 cut(s) 47
BspPI GGATC 3 cut(s) 47, 580, 721
BspT107I GGYRCC 2 cut(s) 141, 451
BspTNI GGTCTC 1 cut(s) 632
BsrI ACTGG 2 cut(s) 41, 288
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 4 cut(s) 39, 127, 572, 713
BssNI GRCGYC 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 209
Bst4CI ACNGT 4 cut(s) 77, 313, 550, 690
Bst6I CTCTTC 4 cut(s) 573, 635, 642, 960
BstACI GRCGYC 1 cut(s) 142
BstDEI CTNAG 3 cut(s) 53, 122, 477
BstDSI CCRYGG 1 cut(s) 209
BstH2I RGCGCY 1 cut(s) 145
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 4 cut(s) 42, 130, 575, 716
BstMAI GTCTC 4 cut(s) 473, 478, 498, 632
BstMBI GATC 4 cut(s) 39, 127, 572, 713
BstMWI GCNNNNNNNGC 3 cut(s) 422, 661, 851
BstNSI RCATGY 1 cut(s) 826
BstSFI CTRYAG 3 cut(s) 18, 43, 786
BstSLI GKGCMC 1 cut(s) 454
BstV1I GCAGC 3 cut(s) 35, 57, 539
BstX2I RGATCY 2 cut(s) 39, 713
BstYI RGATCY 2 cut(s) 39, 713
BsuI GTATCC 1 cut(s) 611
BsuRI GGCC 2 cut(s) 664, 873
BtgI CCRYGG 1 cut(s) 209
BtsIMutI CAGTG 4 cut(s) 82, 130, 281, 555
CaiI CAGNNNCTG 1 cut(s) 716
CfoI GCGC 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 206
CseI GACGC 1 cut(s) 460
Csp6I GTAC 1 cut(s) 306
CviAII CATG 8 cut(s) 210, 249, 412, 427, 823, 859, 869, 931
CviQI GTAC 1 cut(s) 306
DdeI CTNAG 3 cut(s) 53, 122, 477
DinI GGCGCC 1 cut(s) 143
DpnI GATC 4 cut(s) 41, 129, 574, 715
DpnII GATC 4 cut(s) 39, 127, 572, 713
EaeI YGGCCR 2 cut(s) 662, 871
Eam1104I CTCTTC 4 cut(s) 573, 635, 642, 960
EarI CTCTTC 4 cut(s) 573, 635, 642, 960
Eco130I CCWWGG 1 cut(s) 209
Eco24I GRGCYC 2 cut(s) 336, 781
Eco31I GGTCTC 1 cut(s) 632
Eco32I GATATC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 206
EcoRV GATATC 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 209
EcoT38I GRGCYC 2 cut(s) 336, 781
EgeI GGCGCC 1 cut(s) 143
EheI GGCGCC 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 209
Esp3I CGTCTC 1 cut(s) 478
FaeI CATG 8 cut(s) 213, 252, 415, 430, 826, 862, 872, 934
FatI CATG 8 cut(s) 209, 248, 411, 426, 822, 858, 868, 930
FauNDI CATATG 1 cut(s) 535
Fnu4HI GCNGC 4 cut(s) 24, 46, 528, 665
FriOI GRGCYC 2 cut(s) 336, 781
Fsp4HI GCNGC 4 cut(s) 24, 46, 528, 665
FspBI CTAG 3 cut(s) 294, 483, 957
GlaI GCGC 1 cut(s) 143
GluI GCNGC 4 cut(s) 24, 46, 528, 665
GsuI CTGGAG 1 cut(s) 228
HaeII RGCGCY 1 cut(s) 145
HaeIII GGCC 2 cut(s) 664, 873
HgaI GACGC 1 cut(s) 460
HhaI GCGC 1 cut(s) 144
Hin1I GRCGYC 1 cut(s) 142
Hin1II CATG 8 cut(s) 213, 252, 415, 430, 826, 862, 872, 934
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HinfI GANTC 2 cut(s) 371, 865
HphI GGTGA 1 cut(s) 874
Hpy188I TCNGA 5 cut(s) 478, 577, 617, 766, 946
Hpy188III TCNNGA 4 cut(s) 131, 368, 559, 711
Hpy99I CGWCG 2 cut(s) 331, 879
HpyAV CCTTC 2 cut(s) 131, 578
HpyCH4III ACNGT 4 cut(s) 77, 313, 550, 690
HpyCH4IV ACGT 1 cut(s) 326
HpyF10VI GCNNNNNNNGC 3 cut(s) 422, 661, 851
HpyF3I CTNAG 3 cut(s) 53, 122, 477
HpySE526I ACGT 1 cut(s) 326
Hsp92I GRCGYC 1 cut(s) 142
Hsp92II CATG 8 cut(s) 213, 252, 415, 430, 826, 862, 872, 934
HspAI GCGC 1 cut(s) 142
KasI GGCGCC 1 cut(s) 141
Kzo9I GATC 4 cut(s) 39, 127, 572, 713
LmnI GCTCC 1 cut(s) 353
Lsp1109I GCAGC 3 cut(s) 35, 57, 539
LweI GCATC 1 cut(s) 539
MaeI CTAG 3 cut(s) 294, 483, 957
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 2 cut(s) 552, 878
MalI GATC 4 cut(s) 41, 129, 574, 715
MboI GATC 4 cut(s) 39, 127, 572, 713
MboII GAAGA 5 cut(s) 146, 353, 590, 622, 629
MflI RGATCY 2 cut(s) 39, 713
MhlI GDGCHC 4 cut(s) 336, 358, 454, 781
MluCI AATT 8 cut(s) 65, 105, 216, 224, 274, 563, 698, 834
Mly113I GGCGCC 1 cut(s) 142
MlyI GAGTC 1 cut(s) 365
MnlI CCTC 3 cut(s) 38, 131, 574
MseI TTAA 3 cut(s) 104, 233, 737
MslI CAYNNNNRTG 1 cut(s) 75
MspA1I CMGCKG 2 cut(s) 437, 667
Mva1269I GAATGC 2 cut(s) 676, 906
MwoI GCNNNNNNNGC 3 cut(s) 422, 661, 851
NarI GGCGCC 1 cut(s) 142
NcoI CCATGG 1 cut(s) 209
NdeI CATATG 1 cut(s) 535
NdeII GATC 4 cut(s) 39, 127, 572, 713
NlaIII CATG 8 cut(s) 213, 252, 415, 430, 826, 862, 872, 934
NlaIV GGNNCC 2 cut(s) 143, 453
NmeAIII GCCGAG 1 cut(s) 492
NspI RCATGY 1 cut(s) 826
PctI GAATGC 2 cut(s) 676, 906
PfeI GAWTC 1 cut(s) 865
PkrI GCNGC 4 cut(s) 25, 47, 529, 666
PleI GAGTC 1 cut(s) 365
PluTI GGCGCC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 365
PspN4I GGNNCC 2 cut(s) 143, 453
PspPI GGNCC 1 cut(s) 206
PstI CTGCAG 1 cut(s) 47
PstNI CAGNNNCTG 1 cut(s) 716
PsuI RGATCY 2 cut(s) 39, 713
PvuII CAGCTG 1 cut(s) 437
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 3 cut(s) 104, 233, 737
SatI GCNGC 4 cut(s) 24, 46, 528, 665
Sau3AI GATC 4 cut(s) 39, 127, 572, 713
Sau96I GGNCC 1 cut(s) 206
SchI GAGTC 1 cut(s) 365
SduI GDGCHC 4 cut(s) 336, 358, 454, 781
SfaNI GCATC 1 cut(s) 539
SfcI CTRYAG 3 cut(s) 18, 43, 786
SfoI GGCGCC 1 cut(s) 143
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 75
SmlI CTYRAG 2 cut(s) 29, 557
SmoI CTYRAG 2 cut(s) 29, 557
SpeI ACTAGT 1 cut(s) 293
Sse9I AATT 8 cut(s) 65, 105, 216, 224, 274, 563, 698, 834
SsiI CCGC 1 cut(s) 665
SspDI GGCGCC 1 cut(s) 141
SspMI CTAG 3 cut(s) 294, 483, 957
StyI CCWWGG 1 cut(s) 209
TaaI ACNGT 4 cut(s) 77, 313, 550, 690
TaiI ACGT 1 cut(s) 329
TaqI TCGA 1 cut(s) 130
TaqII GACCGA 1 cut(s) 503
TasI AATT 8 cut(s) 65, 105, 216, 224, 274, 563, 698, 834
TatI WGTACW 1 cut(s) 305
TauI GCSGC 1 cut(s) 667
TfiI GAWTC 1 cut(s) 865
Tru1I TTAA 3 cut(s) 104, 233, 737
Tru9I TTAA 3 cut(s) 104, 233, 737
TscAI CASTG 4 cut(s) 82, 130, 288, 555
TseI GCWGC 3 cut(s) 23, 45, 527
TspDTI ATGAA 5 cut(s) 59, 78, 177, 474, 857
TspRI CASTG 4 cut(s) 82, 130, 288, 555
VpaK11BI GGWCC 1 cut(s) 206
XapI RAATTY 5 cut(s) 65, 224, 274, 563, 698
XceI RCATGY 1 cut(s) 826
XspI CTAG 3 cut(s) 294, 483, 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.