Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002838

Physical Location & Seq

Genomic Coordinates Forward (+)

40310513 .. 40314851

Gene Structure 4339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G483500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGGTTGGAGATACAGAGCTGGGTTGTTCTTAATTGCTACTGTTGTTGTCATTTGGGTTACCTCTGCAGAAGTCACCCAGGATATATTTACAGACTATAAGCAGCCATTTGCAGTAACATATCTTGGAGCTTCTCTTATGGTAGTTTACATCCCAATAGCATTCATTAAGGATTGGTTGTGTAATTTACTAAAACGTCGCTCTTCTAAAAGTGGTAAAAATGCAGAAAGCATGAATGAGTTTTCTGCTGGCTTTAGTTCTCCTCTAAAACACATTGGAGGGCAGAAAGACTTTGAATTGGAAATTCATGGGTCCTTGACCAGAAAAGACAGTGATGCAGACCTTTCACCTTGTGCAGAAGCAATACCTTTGGTTTCTAAATACAAAGATGATTTAACTGTGCCGAAACATGATAAAGAGGTTACTGCAAGGCAAATTGCTACTTATGGGTTTTACATTGCCCCTCTCTGGTTTTTTACAGAGTATTTTTCAAATGCTGCCCTTGCGCGCACAAGTGTTGCAAGTACAACAGTATTATCCTCGACTTCAGGACTCTTTACTCTTTTCGTTGGTGCATTCTTGGGTGAAGATTCTTTAAATATAGCAAAAGTGGTGGCGGTCTTTGTCAGCATGGCTGGTGTAGCCATGACAACTCTGGGCAAAACTTGGGCTACAGATGAGTCACAACTGAGTGCTGCCAATGGGAAACGTTCTCTTGTTGGAGATCTTTTTGGCCTTCTCTCAGCCATGTCATATGGTCTATTTACTGTTCTCCTTAAAAAGTTTGCTGGCGAGGGAGGAGAAAGGGTTGATGTGCAAAAGTTGTTTGGGTACATTGGACTTTTTACACTTGTAGCGTTATGGTGGCTTGTTTGGCCATTGACAGCATTGGGCATTGAACCCAAGTTTACGATTCCTCACTCTGCTAAATTGGAAGAAGTTGTTATTGCCAATGGCTTTGTTGGAAGTGTACTCTCAGACTACTTCTGGGCGCTGTGTGTTGTGTGGACAACTCCACTGGTGGCCACCTTGGGCATGTCGCTCACCATACCCCTCGCTATGGTTGCTGACATGTTCATCCACGGCCGTCATTATTCTGCAGTTTACATACTTGGGTCTGCTCAGGTATTTGCAGGATTTGTGATAGCAAATCTTTCAGATTGGTTCTCGAAGAAACTGGGGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

396

Amino Acids

43.18

Weight (kDa)

7.01

Isoelectric Point (pI)

27.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32140
fragaria_vesca	FvH4_2g28780 FvH4_2g28780 FvH4_2g28780 FvH4_2g41280 FvH4_2g41280
malus_domestica	MD08G1052500.v1.1 MD08G1157100.v1.1 MD15G1043000.v1.1 MD15G1128200.v1.1
prunus_persica	Prupe.1G396300_v2.0.a1 Prupe.1G396300_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1
pyrus_communis	pycom08g04380 pycom08g12940 pycom15g11540
rosa_chinensis	RchiOBHm_Chr6g0297541 RchiOBHm_Chr6g0299221
rosa_laevigata	RLG00000011452 RLG00000011585
rosa_multiflora	Rmu_ssc0000319.1_g000003
rosa_roxburghii	Rroxscaffold_7G00168900 Rroxscaffold_7G00170380
rosa_rugosa	Rorug06G0273300 Rorug06G0273400 Rorug06G0286300
rosa_samantha	Rh6AG384400 Rh6AG397500 Rh6BG392500 Rh6BG406100 Rh6CG398400 Rh6CG412200 Rh6DG384900 Rh6DG398900
rosa_wichuraiana	Rw6G033480 Rw6G034800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	508
AciI	CCGC	1 cut(s)	617
AclI	AACGTT	1 cut(s)	709
AcoI	YGGCCR	3 cut(s)	875, 1023, 1084
AcsI	RAATTY	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	531
AdeI	CACNNNGTG	1 cut(s)	353
AfaI	GTAC	3 cut(s)	526, 833, 972
AfiI	CCNNNNNNNGG	2 cut(s)	468, 1060
AflIII	ACRYGT	1 cut(s)	1071
AgsI	TTSAA	3 cut(s)	296, 492, 899
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	2 cut(s)	20, 131
AluI	AGCT	2 cut(s)	20, 131
AoxI	GGCC	4 cut(s)	733, 875, 1023, 1084
ApeKI	GCWGC	3 cut(s)	103, 497, 695
ApoI	RAATTY	1 cut(s)	303
AspLEI	GCGC	3 cut(s)	508, 510, 994
AspS9I	GGNCC	1 cut(s)	312
AsuHPI	GGTGA	4 cut(s)	67, 339, 596, 1036
AvaII	GGWCC	1 cut(s)	312
BalI	TGGCCA	2 cut(s)	877, 1025
BbvI	GCAGC	3 cut(s)	115, 484, 682
BceAI	ACGGC	2 cut(s)	1071, 1099
BciT130I	CCWGG	1 cut(s)	80
BfmI	CTRYAG	3 cut(s)	66, 672, 1098
BfoI	RGCGCY	1 cut(s)	995
BglII	AGATCT	1 cut(s)	724
BisI	GCNGC	3 cut(s)	104, 498, 696
BlsI	GCNGC	3 cut(s)	105, 499, 697
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	312
BmgT120I	GGNCC	1 cut(s)	312
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	80
BmrI	ACTGGG	1 cut(s)	1187
BmsI	GCATC	1 cut(s)	325
BmuI	ACTGGG	1 cut(s)	1187
Bpu10I	CCTNAGC	1 cut(s)	1122
BsaJI	CCNNGG	3 cut(s)	78, 1029, 1081
BsaXI	ACNNNNNCTCC	2 cut(s)	792, 822
Bsc4I	CCNNNNNNNGG	2 cut(s)	468, 1060
Bse1I	ACTGG	2 cut(s)	1023, 1182
Bse3DI	GCAATG	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	3 cut(s)	78, 1029, 1081
BseGI	GGATG	2 cut(s)	150, 1077
BseLI	CCNNNNNNNGG	2 cut(s)	468, 1060
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	4 cut(s)	680, 756, 990, 1136
BseNI	ACTGG	2 cut(s)	1023, 1182
BsePI	GCGCGC	1 cut(s)	506
BseRI	GAGGAG	2 cut(s)	252, 813
BseX3I	CGGCCG	1 cut(s)	1084
BseXI	GCAGC	3 cut(s)	115, 484, 682
BseYI	CCCAGC	1 cut(s)	20
BsgI	GTGCAG	1 cut(s)	375
Bsh1236I	CGCG	1 cut(s)	508
Bsh1285I	CGRYCG	1 cut(s)	1087
BshFI	GGCC	4 cut(s)	735, 877, 1025, 1086
BsiEI	CGRYCG	1 cut(s)	1087
BslI	CCNNNNNNNGG	2 cut(s)	468, 1060
BsmI	GAATGC	2 cut(s)	161, 575
BsnI	GGCC	4 cut(s)	735, 877, 1025, 1086
Bsp143I	GATC	1 cut(s)	724
BspACI	CCGC	1 cut(s)	617
BspANI	GGCC	4 cut(s)	735, 877, 1025, 1086
BspCNI	CTCAG	4 cut(s)	681, 755, 989, 1135
BspFNI	CGCG	1 cut(s)	508
BspLI	GGNNCC	1 cut(s)	313
BspMAI	CTGCAG	2 cut(s)	70, 1102
BspQI	GCTCTTC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	456
BsrI	ACTGG	2 cut(s)	1023, 1182
BssECI	CCNNGG	3 cut(s)	78, 1029, 1081
BssHII	GCGCGC	1 cut(s)	506
BssMI	GATC	1 cut(s)	724
BssT1I	CCWWGG	1 cut(s)	1029
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	5 cut(s)	43, 332, 400, 532, 769
Bst6I	CTCTTC	1 cut(s)	208
BstC8I	GCNNGC	3 cut(s)	250, 508, 790
BstDEI	CTNAG	4 cut(s)	689, 742, 976, 1122
BstDSI	CCRYGG	1 cut(s)	1081
BstEII	GGTNACC	1 cut(s)	58
BstF5I	GGATG	2 cut(s)	150, 1077
BstFNI	CGCG	1 cut(s)	508
BstH2I	RGCGCY	1 cut(s)	995
BstHHI	GCGC	3 cut(s)	508, 510, 994
BstKTI	GATC	1 cut(s)	727
BstMBI	GATC	1 cut(s)	724
BstMCI	CGRYCG	1 cut(s)	1087
BstMWI	GCNNNNNNNGC	4 cut(s)	503, 641, 874, 1064
BstNI	CCWGG	1 cut(s)	80
BstNSI	RCATGY	2 cut(s)	1039, 1075
BstPI	GGTNACC	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	78
BstSFI	CTRYAG	3 cut(s)	66, 672, 1098
BstUI	CGCG	1 cut(s)	508
BstV1I	GCAGC	3 cut(s)	115, 484, 682
BstX2I	RGATCY	1 cut(s)	724
BstYI	RGATCY	1 cut(s)	724
BstZI	CGGCCG	1 cut(s)	1084
BsuRI	GGCC	4 cut(s)	735, 877, 1025, 1086
BtgI	CCRYGG	1 cut(s)	1081
BtsCI	GGATG	2 cut(s)	150, 1077
BtsIMutI	CAGTG	2 cut(s)	337, 1016
Cac8I	GCNNGC	3 cut(s)	250, 508, 790
CfoI	GCGC	3 cut(s)	508, 510, 994
Cfr13I	GGNCC	1 cut(s)	312
Csp6I	GTAC	3 cut(s)	525, 832, 971
CspCI	CAANNNNNGTGG	2 cut(s)	594, 629
CviAII	CATG	8 cut(s)	232, 308, 410, 631, 646, 748, 1036, 1072
CviQI	GTAC	3 cut(s)	525, 832, 971
DdeI	CTNAG	4 cut(s)	689, 742, 976, 1122
DpnI	GATC	1 cut(s)	726
DpnII	GATC	1 cut(s)	724
DraI	TTTAAA	1 cut(s)	597
DraIII	CACNNNGTG	1 cut(s)	353
EaeI	YGGCCR	3 cut(s)	875, 1023, 1084
EagI	CGGCCG	1 cut(s)	1084
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
EclXI	CGGCCG	1 cut(s)	1084
Eco130I	CCWWGG	1 cut(s)	1029
Eco47I	GGWCC	1 cut(s)	312
Eco52I	CGGCCG	1 cut(s)	1084
Eco57I	CTGAAG	1 cut(s)	531
Eco91I	GGTNACC	1 cut(s)	58
EcoO109I	RGGNCCY	1 cut(s)	312
EcoO65I	GGTNACC	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	1029
ErhI	CCWWGG	1 cut(s)	1029
FaeI	CATG	8 cut(s)	235, 311, 413, 634, 649, 751, 1039, 1075
FatI	CATG	8 cut(s)	231, 307, 409, 630, 645, 747, 1035, 1071
FauNDI	CATATG	1 cut(s)	754
Fnu4HI	GCNGC	3 cut(s)	104, 498, 696
FokI	GGATG	2 cut(s)	137, 1064
Fsp4HI	GCNGC	3 cut(s)	104, 498, 696
GlaI	GCGC	3 cut(s)	507, 509, 993
GluI	GCNGC	3 cut(s)	104, 498, 696
GsaI	CCCAGC	1 cut(s)	24
HaeII	RGCGCY	1 cut(s)	995
HaeIII	GGCC	4 cut(s)	735, 877, 1025, 1086
HhaI	GCGC	3 cut(s)	508, 510, 994
Hin1II	CATG	8 cut(s)	235, 311, 413, 634, 649, 751, 1039, 1075
Hin6I	GCGC	3 cut(s)	506, 508, 992
HinP1I	GCGC	3 cut(s)	506, 508, 992
HinfI	GANTC	4 cut(s)	552, 590, 680, 913
HphI	GGTGA	4 cut(s)	67, 339, 596, 1036
Hpy166II	GTNNAC	5 cut(s)	148, 909, 971, 1008, 1105
Hpy188I	TCNGA	2 cut(s)	979, 1159
Hpy188III	TCNNGA	2 cut(s)	549, 1168
Hpy8I	GTNNAC	5 cut(s)	148, 909, 971, 1008, 1105
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	1 cut(s)	746
HpyCH4III	ACNGT	5 cut(s)	43, 332, 400, 532, 769
HpyCH4IV	ACGT	2 cut(s)	196, 709
HpyF10VI	GCNNNNNNNGC	4 cut(s)	503, 641, 874, 1064
HpyF3I	CTNAG	4 cut(s)	689, 742, 976, 1122
HpySE526I	ACGT	2 cut(s)	196, 709
Hsp92II	CATG	8 cut(s)	235, 311, 413, 634, 649, 751, 1039, 1075
HspAI	GCGC	3 cut(s)	506, 508, 992
Kzo9I	GATC	1 cut(s)	724
LguI	GCTCTTC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	128
Lsp1109I	GCAGC	3 cut(s)	115, 484, 682
LweI	GCATC	1 cut(s)	325
MaeII	ACGT	2 cut(s)	196, 709
MaeIII	GTNAC	5 cut(s)	58, 73, 115, 421, 681
MalI	GATC	1 cut(s)	726
MboI	GATC	1 cut(s)	724
MboII	GAAGA	4 cut(s)	195, 599, 947, 1183
MflI	RGATCY	1 cut(s)	724
MlsI	TGGCCA	2 cut(s)	877, 1025
MluCI	AATT	6 cut(s)	33, 184, 296, 303, 435, 929
MluNI	TGGCCA	2 cut(s)	877, 1025
MlyI	GAGTC	2 cut(s)	546, 689
MmeI	TCCRAC	2 cut(s)	700, 943
Mox20I	TGGCCA	2 cut(s)	877, 1025
MscI	TGGCCA	2 cut(s)	877, 1025
MseI	TTAA	5 cut(s)	32, 168, 395, 596, 777
Msp20I	TGGCCA	2 cut(s)	877, 1025
MspR9I	CCNGG	1 cut(s)	80
Mva1269I	GAATGC	2 cut(s)	161, 575
MvaI	CCWGG	1 cut(s)	80
MvnI	CGCG	1 cut(s)	508
MwoI	GCNNNNNNNGC	4 cut(s)	503, 641, 874, 1064
NdeI	CATATG	1 cut(s)	754
NdeII	GATC	1 cut(s)	724
NlaIII	CATG	8 cut(s)	235, 311, 413, 634, 649, 751, 1039, 1075
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	2 cut(s)	73, 681
NspI	RCATGY	2 cut(s)	1039, 1075
PauI	GCGCGC	1 cut(s)	506
PciI	ACATGT	1 cut(s)	1071
PciSI	GCTCTTC	1 cut(s)	208
PctI	GAATGC	2 cut(s)	161, 575
PfeI	GAWTC	2 cut(s)	590, 913
PkrI	GCNGC	3 cut(s)	105, 499, 697
PleI	GAGTC	2 cut(s)	546, 688
PpsI	GAGTC	2 cut(s)	546, 688
PpuMI	RGGWCCY	1 cut(s)	312
PscI	ACATGT	1 cut(s)	1071
Psp1406I	AACGTT	1 cut(s)	709
Psp5II	RGGWCCY	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	78
PspEI	GGTNACC	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	1 cut(s)	312
PspPPI	RGGWCCY	1 cut(s)	312
PstI	CTGCAG	2 cut(s)	70, 1102
PsuI	RGATCY	1 cut(s)	724
PteI	GCGCGC	1 cut(s)	506
RsaI	GTAC	3 cut(s)	526, 833, 972
RsaNI	GTAC	3 cut(s)	525, 832, 971
SapI	GCTCTTC	1 cut(s)	208
SaqAI	TTAA	5 cut(s)	32, 168, 395, 596, 777
SatI	GCNGC	3 cut(s)	104, 498, 696
Sau3AI	GATC	1 cut(s)	724
Sau96I	GGNCC	1 cut(s)	312
SchI	GAGTC	2 cut(s)	546, 689
ScrFI	CCNGG	1 cut(s)	80
SfaNI	GCATC	1 cut(s)	325
SfcI	CTRYAG	3 cut(s)	66, 672, 1098
SinI	GGWCC	1 cut(s)	312
Sse9I	AATT	6 cut(s)	33, 184, 296, 303, 435, 929
SsiI	CCGC	1 cut(s)	617
StyD4I	CCNGG	1 cut(s)	78
StyI	CCWWGG	1 cut(s)	1029
TaaI	ACNGT	5 cut(s)	43, 332, 400, 532, 769
TaiI	ACGT	2 cut(s)	199, 712
TaqI	TCGA	2 cut(s)	542, 1169
TasI	AATT	6 cut(s)	33, 184, 296, 303, 435, 929
TatI	WGTACW	2 cut(s)	524, 970
TfiI	GAWTC	2 cut(s)	590, 913
Tru1I	TTAA	5 cut(s)	32, 168, 395, 596, 777
Tru9I	TTAA	5 cut(s)	32, 168, 395, 596, 777
TscAI	CASTG	2 cut(s)	337, 1023
TseFI	GTSAC	2 cut(s)	73, 681
TseI	GCWGC	3 cut(s)	103, 497, 695
Tsp45I	GTSAC	2 cut(s)	73, 681
TspDTI	ATGAA	4 cut(s)	154, 248, 296, 1066
TspRI	CASTG	2 cut(s)	337, 1023
VpaK11BI	GGWCC	1 cut(s)	312
XapI	RAATTY	1 cut(s)	303
XceI	RCATGY	2 cut(s)	1039, 1075
XcmI	CCANNNNNNNNNTGG	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.