Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002838

Physical Location & Seq

Genomic Coordinates Forward (+)

9285836 .. 9291125

Gene Structure 5290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1128200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGATGGGGTGGAGGTACAGAGCTGGGTTGTTCCTAATTGCTGCTGTTGTTGTCATTTGGGTCACCTCTGCAGAAGTTACCCAGGGTATATTTACGGACTATAAGCAGCCATTTGTAGTAACATATCTCGGAGCTTCTCTTATGGTAGTTTACATCCCAATAGCATTCATTAAGGATTGGTTGTGTAATTTTCTAAAACGCCGCTCCTCTAAAAGTGATAAAAATGCAGAAAGCAGCATGAATGAGTTTTCTGCTGGATTTAGTTCTACTCTAAAACTCAATGGAGTGAAAGACTTTGAATTGGAAATTCATGGGTCCTTGACCAGAAAAGACAGTGATGCAGACCTTTCACCTCATGCAGAAGAACAGCCTTTGGTTTCTAAATACAAAGATGATTTAAATGTGCTGAAACATGATAAAGAGGTTACTACGAGGCAAATTGCTACTTATGGGTTTTACATTGCCCCTCTCTGGTTTATTACGGAGTATTTTTCAAATGCTGCTCTTGCGCGTACAAGTGTTGCAAGTACAACAGTATTATCCTCGACGTCAGGACTCTTTACTCTTTTTGTAGGTGCATTCTTGGGCGAAGATTCTTTAAATGTAGCAAAGGTGGTCGCTGTCTTTGTTAGCATGGCTGGTGTAGCTATGACAACTCTGGGCAAAACATGGGCTACGGATGAGTCACAACTGAGTGCCGCCAACGGGAAACGCTCTCTTGTTGGAGATATGTTTGGTCTTCTCTCAGCCATGTCATATGGTCTATTCACTGTTCTTCTTAAAAAGTTTGCGGGTGAAGGAGGAGAAAGGGTTGACGTGCAAAAGTTGTTTGGGTATATTGGATTGTTTACACTTGTATTGTTATGGTGGCTTATTTGGCCGTTGACAGCATTGGGCATTGAGCCCAAGTTTATGATTCCTCACTCTGCTAAATTGGAAGAAGTTGTTATTGCCAACGGCTTTATTGGAAGTGTACTCTCTGACTACTTCTGGGCACTATGTGTTGTGTGGACAACTCCACTCGTTGCCACCTTGGGCATGTCGCTCACCATTCCCCTTGCTATGGTTGCTGACATGTTCATCCATGGCCGTCATTATTCAGCAGTTTACATACTTGGTTCTGTTCAGGTATTTGCAGGATTTGTAATAGCTAACCTTTCGGATTGGTGCTCGAAGAAGTTGGGATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

397

Amino Acids

43.54

Weight (kDa)

6.6

Isoelectric Point (pI)

24.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32140
fragaria_vesca	FvH4_2g28780 FvH4_2g28780 FvH4_2g28780 FvH4_2g41280 FvH4_2g41280
malus_domestica	MD08G1052500.v1.1 MD08G1157100.v1.1 MD15G1043000.v1.1 MD15G1128200.v1.1
prunus_persica	Prupe.1G396300_v2.0.a1 Prupe.1G396300_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1
pyrus_communis	pycom08g04380 pycom08g12940 pycom15g11540
rosa_chinensis	RchiOBHm_Chr6g0297541 RchiOBHm_Chr6g0299221
rosa_laevigata	RLG00000011452 RLG00000011585
rosa_multiflora	Rmu_ssc0000319.1_g000003
rosa_roxburghii	Rroxscaffold_7G00168900 Rroxscaffold_7G00170380
rosa_rugosa	Rorug06G0273300 Rorug06G0273400 Rorug06G0286300
rosa_samantha	Rh6AG384400 Rh6AG397500 Rh6BG392500 Rh6BG406100 Rh6CG398400 Rh6CG412200 Rh6DG384900 Rh6DG398900
rosa_wichuraiana	Rw6G033480 Rw6G034800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	551
AccBSI	CCGCTC	1 cut(s)	204
AccII	CGCG	1 cut(s)	511
AciI	CCGC	3 cut(s)	202, 699, 791
AcoI	YGGCCR	2 cut(s)	878, 1087
AcsI	RAATTY	1 cut(s)	306
AcyI	GRCGYC	1 cut(s)	548
AdeI	CACNNNGTG	1 cut(s)	1001
AfaI	GTAC	4 cut(s)	17, 514, 529, 975
AfiI	CCNNNNNNNGG	3 cut(s)	471, 705, 1063
AflIII	ACRYGT	1 cut(s)	1074
AgsI	TTSAA	2 cut(s)	299, 495
AjiI	CACGTC	1 cut(s)	817
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	4 cut(s)	23, 134, 647, 1151
AluI	AGCT	4 cut(s)	23, 134, 647, 1151
Alw21I	GWGCWC	1 cut(s)	1172
AoxI	GGCC	2 cut(s)	878, 1087
ApeKI	GCWGC	4 cut(s)	41, 106, 234, 500
ApoI	RAATTY	1 cut(s)	306
AspLEI	GCGC	1 cut(s)	511
AspS9I	GGNCC	1 cut(s)	315
AsuHPI	GGTGA	4 cut(s)	55, 342, 806, 1039
AvaII	GGWCC	1 cut(s)	315
BaeGI	GKGCMC	1 cut(s)	997
BanII	GRGCYC	1 cut(s)	906
BbsI	GAAGAC	1 cut(s)	731
Bbv12I	GWGCWC	1 cut(s)	1172
BbvI	GCAGC	4 cut(s)	28, 118, 246, 487
BceAI	ACGGC	3 cut(s)	865, 973, 1074
BciT130I	CCWGG	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	69
BisI	GCNGC	6 cut(s)	42, 107, 202, 235, 501, 699
BlsI	GCNGC	6 cut(s)	43, 108, 203, 236, 502, 700
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	315
BmgBI	CACGTC	1 cut(s)	817
BmgT120I	GGNCC	1 cut(s)	315
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	731
BsaHI	GRCGYC	1 cut(s)	548
BsaJI	CCNNGG	4 cut(s)	81, 82, 1032, 1084
BsaXI	ACNNNNNCTCC	2 cut(s)	795, 825
Bsc4I	CCNNNNNNNGG	3 cut(s)	471, 705, 1063
Bse3DI	GCAATG	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	4 cut(s)	81, 82, 1032, 1084
BseGI	GGATG	3 cut(s)	153, 685, 1080
BseLI	CCNNNNNNNGG	3 cut(s)	471, 705, 1063
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	2 cut(s)	683, 759
BseRI	GAGGAG	2 cut(s)	196, 816
BseSI	GKGCMC	1 cut(s)	997
BseXI	GCAGC	4 cut(s)	28, 118, 246, 487
BseYI	CCCAGC	1 cut(s)	23
Bsh1236I	CGCG	1 cut(s)	511
BshFI	GGCC	2 cut(s)	880, 1089
BsiHKAI	GWGCWC	1 cut(s)	1172
BslI	CCNNNNNNNGG	3 cut(s)	471, 705, 1063
BsmI	GAATGC	2 cut(s)	164, 578
BsnI	GGCC	2 cut(s)	880, 1089
Bsp1286I	GDGCHC	3 cut(s)	906, 997, 1172
Bsp19I	CCATGG	1 cut(s)	1084
BspACI	CCGC	3 cut(s)	202, 699, 791
BspANI	GGCC	2 cut(s)	880, 1089
BspCNI	CTCAG	2 cut(s)	684, 758
BspFNI	CGCG	1 cut(s)	511
BspLI	GGNNCC	1 cut(s)	316
BspMAI	CTGCAG	1 cut(s)	73
BsrBI	CCGCTC	1 cut(s)	204
BsrDI	GCAATG	1 cut(s)	459
BssECI	CCNNGG	4 cut(s)	81, 82, 1032, 1084
BssNI	GRCGYC	1 cut(s)	548
BssT1I	CCWWGG	2 cut(s)	1032, 1084
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	3 cut(s)	335, 535, 772
BstACI	GRCGYC	1 cut(s)	548
BstDEI	CTNAG	2 cut(s)	692, 745
BstDSI	CCRYGG	1 cut(s)	1084
BstEII	GGTNACC	1 cut(s)	61
BstF5I	GGATG	3 cut(s)	153, 685, 1080
BstFNI	CGCG	1 cut(s)	511
BstHHI	GCGC	1 cut(s)	511
BstMWI	GCNNNNNNNGC	4 cut(s)	506, 644, 877, 1067
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	2 cut(s)	1042, 1078
BstPI	GGTNACC	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	1 cut(s)	69
BstSLI	GKGCMC	1 cut(s)	997
BstUI	CGCG	1 cut(s)	511
BstV1I	GCAGC	4 cut(s)	28, 118, 246, 487
BstV2I	GAAGAC	1 cut(s)	731
BsuRI	GGCC	2 cut(s)	880, 1089
BtgI	CCRYGG	1 cut(s)	1084
BtrI	CACGTC	1 cut(s)	817
BtsCI	GGATG	3 cut(s)	153, 685, 1080
BtsIMutI	CAGTG	2 cut(s)	340, 768
CfoI	GCGC	1 cut(s)	511
Cfr13I	GGNCC	1 cut(s)	315
Csp6I	GTAC	4 cut(s)	16, 513, 528, 974
CviQI	GTAC	4 cut(s)	16, 513, 528, 974
DdeI	CTNAG	2 cut(s)	692, 745
DraI	TTTAAA	2 cut(s)	399, 600
DraIII	CACNNNGTG	1 cut(s)	1001
EaeI	YGGCCR	2 cut(s)	878, 1087
Eco130I	CCWWGG	2 cut(s)	1032, 1084
Eco24I	GRGCYC	1 cut(s)	906
Eco47I	GGWCC	1 cut(s)	315
Eco91I	GGTNACC	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	315
EcoO65I	GGTNACC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	2 cut(s)	1032, 1084
EcoT38I	GRGCYC	1 cut(s)	906
ErhI	CCWWGG	2 cut(s)	1032, 1084
FauI	CCCGC	1 cut(s)	784
FauNDI	CATATG	1 cut(s)	757
Fnu4HI	GCNGC	6 cut(s)	42, 107, 202, 235, 501, 699
FokI	GGATG	3 cut(s)	140, 692, 1067
FriOI	GRGCYC	1 cut(s)	906
Fsp4HI	GCNGC	6 cut(s)	42, 107, 202, 235, 501, 699
GlaI	GCGC	1 cut(s)	510
GluI	GCNGC	6 cut(s)	42, 107, 202, 235, 501, 699
GsaI	CCCAGC	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	880, 1089
HhaI	GCGC	1 cut(s)	511
Hin1I	GRCGYC	1 cut(s)	548
Hin6I	GCGC	1 cut(s)	509
HinP1I	GCGC	1 cut(s)	509
HincII	GTYRAC	2 cut(s)	814, 885
HindII	GTYRAC	2 cut(s)	814, 885
HinfI	GANTC	4 cut(s)	555, 593, 683, 916
HphI	GGTGA	4 cut(s)	55, 342, 806, 1039
Hpy166II	GTNNAC	7 cut(s)	151, 814, 849, 885, 974, 1011, 1108
Hpy188I	TCNGA	3 cut(s)	131, 982, 1162
Hpy188III	TCNNGA	1 cut(s)	552
Hpy8I	GTNNAC	7 cut(s)	151, 814, 849, 885, 974, 1011, 1108
Hpy99I	CGWCG	1 cut(s)	550
HpyAV	CCTTC	1 cut(s)	791
HpyCH4III	ACNGT	3 cut(s)	335, 535, 772
HpyCH4IV	ACGT	2 cut(s)	548, 816
HpyCH4V	TGCA	8 cut(s)	71, 227, 341, 359, 524, 578, 820, 1136
HpyF10VI	GCNNNNNNNGC	4 cut(s)	506, 644, 877, 1067
HpyF3I	CTNAG	2 cut(s)	692, 745
HpySE526I	ACGT	2 cut(s)	548, 816
Hsp92I	GRCGYC	1 cut(s)	548
HspAI	GCGC	1 cut(s)	509
LmnI	GCTCC	2 cut(s)	131, 209
Lsp1109I	GCAGC	4 cut(s)	28, 118, 246, 487
LweI	GCATC	1 cut(s)	328
MaeII	ACGT	2 cut(s)	548, 816
MaeIII	GTNAC	5 cut(s)	61, 76, 118, 424, 684
MbiI	CCGCTC	1 cut(s)	204
MboII	GAAGA	6 cut(s)	374, 602, 731, 767, 950, 1186
MhlI	GDGCHC	3 cut(s)	906, 997, 1172
MluCI	AATT	6 cut(s)	36, 187, 299, 306, 438, 932
MlyI	GAGTC	2 cut(s)	549, 692
MmeI	TCCRAC	1 cut(s)	703
MseI	TTAA	4 cut(s)	171, 398, 599, 780
MspR9I	CCNGG	1 cut(s)	83
Mva1269I	GAATGC	2 cut(s)	164, 578
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	511
MwoI	GCNNNNNNNGC	4 cut(s)	506, 644, 877, 1067
NcoI	CCATGG	1 cut(s)	1084
NdeI	CATATG	1 cut(s)	757
NlaIV	GGNNCC	1 cut(s)	316
NmuCI	GTSAC	2 cut(s)	61, 684
NspI	RCATGY	2 cut(s)	1042, 1078
PasI	CCCWGGG	1 cut(s)	82
PciI	ACATGT	1 cut(s)	1074
PctI	GAATGC	2 cut(s)	164, 578
PfeI	GAWTC	2 cut(s)	593, 916
PkrI	GCNGC	6 cut(s)	43, 108, 203, 236, 502, 700
PleI	GAGTC	2 cut(s)	549, 691
PpsI	GAGTC	2 cut(s)	549, 691
PpuMI	RGGWCCY	1 cut(s)	315
PscI	ACATGT	1 cut(s)	1074
Psp5II	RGGWCCY	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	81
PspEI	GGTNACC	1 cut(s)	61
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	1 cut(s)	315
PspPPI	RGGWCCY	1 cut(s)	315
PstI	CTGCAG	1 cut(s)	73
RsaI	GTAC	4 cut(s)	17, 514, 529, 975
RsaNI	GTAC	4 cut(s)	16, 513, 528, 974
SaqAI	TTAA	4 cut(s)	171, 398, 599, 780
SatI	GCNGC	6 cut(s)	42, 107, 202, 235, 501, 699
Sau96I	GGNCC	1 cut(s)	315
SchI	GAGTC	2 cut(s)	549, 692
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	3 cut(s)	906, 997, 1172
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	1 cut(s)	69
SinI	GGWCC	1 cut(s)	315
SmiI	ATTTAAAT	1 cut(s)	399
Sse9I	AATT	6 cut(s)	36, 187, 299, 306, 438, 932
SsiI	CCGC	3 cut(s)	202, 699, 791
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	2 cut(s)	1032, 1084
SwaI	ATTTAAAT	1 cut(s)	399
TaaI	ACNGT	3 cut(s)	335, 535, 772
TaiI	ACGT	2 cut(s)	551, 819
TaqI	TCGA	2 cut(s)	545, 1172
TasI	AATT	6 cut(s)	36, 187, 299, 306, 438, 932
TatI	WGTACW	2 cut(s)	527, 973
TauI	GCSGC	2 cut(s)	204, 701
TfiI	GAWTC	2 cut(s)	593, 916
Tru1I	TTAA	4 cut(s)	171, 398, 599, 780
Tru9I	TTAA	4 cut(s)	171, 398, 599, 780
TscAI	CASTG	2 cut(s)	340, 775
TseFI	GTSAC	2 cut(s)	61, 684
TseI	GCWGC	4 cut(s)	41, 106, 234, 500
Tsp45I	GTSAC	2 cut(s)	61, 684
TspDTI	ATGAA	4 cut(s)	157, 254, 299, 1069
TspGWI	ACGGA	3 cut(s)	110, 497, 692
TspRI	CASTG	2 cut(s)	340, 775
VpaK11BI	GGWCC	1 cut(s)	315
XapI	RAATTY	1 cut(s)	306
XceI	RCATGY	2 cut(s)	1042, 1078
ZraI	GACGTC	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.