AT4G33030

UDP-sulfoquinovose synthase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
15935373 .. 15937833
2461 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33030.1

Sequence Viewer

Length: 1434 bp
ATGGCGCATCTACTTTCAGCTTCATGCCCTTCAGTTATCTCACTTAGCAGCAGCAGCAGCAAGAATTCAGTTAAGCCGTTTGTTTCAGGGCAGACCTTCTTCAATGCTCAGCTTCTTTCAAGATCTTCTCTCAAAGGACTTCTCTTCCAAGAGAAGAAACCGAGAAAAAGCTGCGTTTTCAGAGCAACTGCTGTACCTATAACCCAACAAGCACCACCCGAAACATCTACCAATAACTCATCCTCTAAACCAAAGCGTGTTATGGTCATTGGTGGAGATGGTTATTGCGGTTGGGCTACTGCTCTCCACTTGTCCAAGAAGAATTACGAAGTTTGCATTGTTGACAACCTTGTAAGACGTCTTTTCGACCACCAGCTTGGACTTGAGTCATTGACTCCTATTGCCTCCATTCATGACCGAATCAGCCGATGGAAGGCTTTGACAGGGAAATCAATTGAGTTGTACGTTGGTGATATCTGTGATTTCGAATTCTTAGCTGAGTCTTTCAAGTCTTTTGAGCCGGATTCAGTTGTCCACTTTGGGGAACAGAGATCCGCTCCTTACTCGATGATTGACCGGTCCAGAGCAGTTTATACACAGCACAACAATGTGATTGGGACTCTCAACGTTCTCTTTGCTATAAAAGAGTTTGGAGAGGAGTGTCATCTTGTAAAACTTGGGACGATGGGTGAGTATGGAACTCCAAATATTGACATCGAGGAAGGTTATATAACCATAACCCACAACGGTAGAACTGACACTTTGCCATACCCCAAGCAAGCTAGCTCCTTTTATCATCTTAGCAAAGTTCATGATTCGCACAACATTGCTTTTACTTGCAAGGCTTGGGGTATTAGAGCCACTGATCTCAACCAAGGAGTTGTTTATGGAGTGAAGACTGATGAGACAGAGATGCATGAGGAACTCCGTAACCGACTGGATTACGATGCTGTGTTTGGTACAGCACTTAACCGGTTCTGTGTGCAAGCTGCTGTTGGTCACCCACTTACAGTTTATGGTAAAGGTGGTCAGACGAGAGGCTACCTCGATATAAGAGACACGGTTCAATGTGTTGAGATCGCTATAGCAAACCCGGCAAAAGCTGGTGAGTTCCGGGTCTTCAACCAATTTACAGAACAGTTTTCAGTCAATGAACTGGCTTCACTCGTCACTAAAGCGGGTTCAAAGCTTGGGCTAGACGTGAAAAAGATGACGGTGCCTAACCCGAGAGTGGAGGCAGAAGAACATTACTACAACGCAAAGCACACTAAGCTGATGGAACTTGGACTTGAGCCTCACTATCTATCTGACTCACTTCTTGATTCGTTGCTCAACTTTGCTGTTCAGTTTAAAGATCGTGTGGACACGAAACAAATCATGCCTAGTGTTTCCTGGAAGAAGATTGGCGTCAAGACTAAGTCCATGACCACATAA

Protein Analysis

477

Amino Acids

53.11

Weight (kDa)

8.41

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 87 - 375 2.7e-22 NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd PF16363 88 - 399 4.5e-17 GDP-mannose 4,6 dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014062)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 361
AccB1I GGYRCC 1 cut(s) 1216
AccBSI CCGCTC 1 cut(s) 557
AciI CCGC 3 cut(s) 288, 555, 1178
AclI AACGTT 1 cut(s) 627
AclWI GGATC 1 cut(s) 546
AcsI RAATTY 2 cut(s) 64, 488
AcuI CTGAAG 1 cut(s) 15
AcyI GRCGYC 2 cut(s) 358, 1407
AfaI GTAC 3 cut(s) 195, 464, 961
AfiI CCNNNNNNNGG 3 cut(s) 433, 541, 1231
AgeI ACCGGT 2 cut(s) 576, 972
AgsI TTSAA 6 cut(s) 103, 120, 508, 1067, 1123, 1185
AjiI CACGTC 1 cut(s) 1201
AjnI CCWGG 1 cut(s) 1391
Alw26I GTCTC 2 cut(s) 899, 1050
AlwI GGATC 1 cut(s) 546
Ama87I CYCGRG 1 cut(s) 1225
ApeKI GCWGC 6 cut(s) 48, 51, 54, 57, 171, 989
ApoI RAATTY 2 cut(s) 64, 488
AsiGI ACCGGT 2 cut(s) 576, 972
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 579
AsuC2I CCSGG 2 cut(s) 1094, 1115
AsuHPI GGTGA 4 cut(s) 482, 701, 992, 1118
AsuII TTCGAA 1 cut(s) 486
AsuNHI GCTAGC 1 cut(s) 782
AvaI CYCGRG 1 cut(s) 1225
AvaII GGWCC 1 cut(s) 579
BaeI ACNNNNGTAYC 2 cut(s) 177, 210
BanI GGYRCC 1 cut(s) 1216
BbsI GAAGAC 2 cut(s) 902, 1111
BbvI GCAGC 6 cut(s) 60, 63, 66, 69, 158, 976
BccI CCATC 4 cut(s) 272, 423, 679, 1270
BceAI ACGGC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 1393
BcnI CCSGG 2 cut(s) 1094, 1115
BcoDI GTCTC 2 cut(s) 899, 1050
BfaI CTAG 3 cut(s) 783, 1196, 1383
BfmI CTRYAG 1 cut(s) 1083
BglII AGATCT 1 cut(s) 122
BisI GCNGC 6 cut(s) 49, 52, 55, 58, 172, 990
BlpI GCTNAGC 1 cut(s) 108
BlsI GCNGC 6 cut(s) 50, 53, 56, 59, 173, 991
Bme1390I CCNGG 3 cut(s) 1094, 1115, 1393
Bme18I GGWCC 1 cut(s) 579
BmeT110I CYCGRG 1 cut(s) 1225
BmgBI CACGTC 1 cut(s) 1201
BmgT120I GGNCC 1 cut(s) 579
BmiI GGNNCC 1 cut(s) 1218
BmrFI CCNGG 3 cut(s) 1094, 1115, 1393
BmsI GCATC 3 cut(s) 16, 903, 937
BmtI GCTAGC 1 cut(s) 786
BoxI GACNNNNGTC 1 cut(s) 385
BpiI GAAGAC 2 cut(s) 902, 1111
BplI GAGNNNNNCTC 4 cut(s) 541, 573, 1029, 1061
Bpu1102I GCTNAGC 1 cut(s) 108
Bpu14I TTCGAA 1 cut(s) 486
BpuEI CTTGAG 2 cut(s) 404, 1310
BpuMI CCSGG 2 cut(s) 1094, 1115
BsaHI GRCGYC 2 cut(s) 358, 1407
BsaJI CCNNGG 1 cut(s) 874
BsaWI WCCGGW 2 cut(s) 576, 972
Bsc4I CCNNNNNNNGG 3 cut(s) 433, 541, 1231
Bse118I RCCGGY 2 cut(s) 576, 972
Bse1I ACTGG 2 cut(s) 942, 1161
Bse3DI GCAATG 1 cut(s) 825
BseBI CCWGG 1 cut(s) 1393
BseDI CCNNGG 1 cut(s) 874
BseGI GGATG 1 cut(s) 239
BseLI CCNNNNNNNGG 3 cut(s) 433, 541, 1231
BseMI GCAATG 1 cut(s) 825
BseMII CTCAG 2 cut(s) 122, 489
BseNI ACTGG 2 cut(s) 942, 1161
BseRI GAGGAG 1 cut(s) 671
BseXI GCAGC 6 cut(s) 60, 63, 66, 69, 158, 976
BshNI GGYRCC 1 cut(s) 1216
BshTI ACCGGT 2 cut(s) 576, 972
BsiHKCI CYCGRG 1 cut(s) 1225
BsiSI CCGG 5 cut(s) 521, 577, 973, 1094, 1114
BslFI GGGAC 2 cut(s) 631, 694
BslI CCNNNNNNNGG 3 cut(s) 433, 541, 1231
BsmAI GTCTC 2 cut(s) 899, 1050
BsmFI GGGAC 2 cut(s) 631, 694
BsoBI CYCGRG 1 cut(s) 1225
Bsp119I TTCGAA 1 cut(s) 486
Bsp143I GATC 5 cut(s) 122, 551, 865, 1077, 1354
Bsp1720I GCTNAGC 1 cut(s) 108
BspACI CCGC 3 cut(s) 288, 555, 1178
BspCNI CTCAG 2 cut(s) 121, 490
BspHI TCATGA 2 cut(s) 412, 811
BspLI GGNNCC 1 cut(s) 1218
BspOI GCTAGC 1 cut(s) 786
BspPI GGATC 1 cut(s) 546
BspT104I TTCGAA 1 cut(s) 486
BspT107I GGYRCC 1 cut(s) 1216
BsrBI CCGCTC 1 cut(s) 557
BsrDI GCAATG 1 cut(s) 825
BsrFI RCCGGY 2 cut(s) 576, 972
BsrI ACTGG 2 cut(s) 942, 1161
BssAI RCCGGY 2 cut(s) 576, 972
BssECI CCNNGG 1 cut(s) 874
BssMI GATC 5 cut(s) 122, 551, 865, 1077, 1354
BssNI GRCGYC 2 cut(s) 358, 1407
BssT1I CCWWGG 1 cut(s) 874
Bst2UI CCWGG 1 cut(s) 1393
Bst4CI ACNGT 5 cut(s) 749, 1012, 1063, 1140, 1216
Bst6I CTCTTC 1 cut(s) 149
BstACI GRCGYC 2 cut(s) 358, 1407
BstBI TTCGAA 1 cut(s) 486
BstC8I GCNNGC 3 cut(s) 780, 784, 987
BstDEI CTNAG 7 cut(s) 44, 108, 493, 498, 800, 1269, 1416
BstEII GGTNACC 1 cut(s) 998
BstF5I GGATG 1 cut(s) 239
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 5 cut(s) 125, 554, 868, 1080, 1357
BstMAI GTCTC 2 cut(s) 899, 1050
BstMBI GATC 5 cut(s) 122, 551, 865, 1077, 1354
BstMWI GCNNNNNNNGC 4 cut(s) 54, 57, 1094, 1270
BstNI CCWGG 1 cut(s) 1393
BstPAI GACNNNNGTC 1 cut(s) 385
BstPI GGTNACC 1 cut(s) 998
BstSCI CCNGG 3 cut(s) 1092, 1113, 1391
BstSFI CTRYAG 1 cut(s) 1083
BstV1I GCAGC 6 cut(s) 60, 63, 66, 69, 158, 976
BstV2I GAAGAC 2 cut(s) 902, 1111
BstX2I RGATCY 2 cut(s) 122, 551
BstXI CCANNNNNNTGG 1 cut(s) 377
BstYI RGATCY 2 cut(s) 122, 551
BtrI CACGTC 1 cut(s) 1201
BtsCI GGATG 1 cut(s) 239
BtsIMutI CAGTG 1 cut(s) 861
Cac8I GCNNGC 3 cut(s) 780, 784, 987
CciI TCATGA 2 cut(s) 412, 811
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 576, 972
Cfr13I GGNCC 1 cut(s) 579
CseI GACGC 1 cut(s) 1396
Csp6I GTAC 3 cut(s) 194, 463, 960
CspAI ACCGGT 2 cut(s) 576, 972
CviAII CATG 6 cut(s) 24, 413, 812, 917, 1378, 1423
CviQI GTAC 3 cut(s) 194, 463, 960
DdeI CTNAG 7 cut(s) 44, 108, 493, 498, 800, 1269, 1416
DpnI GATC 5 cut(s) 124, 553, 867, 1079, 1356
DpnII GATC 5 cut(s) 122, 551, 865, 1077, 1354
DraI TTTAAA 1 cut(s) 1351
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 874
Eco32I GATATC 1 cut(s) 475
Eco47I GGWCC 1 cut(s) 579
Eco57I CTGAAG 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 1225
Eco91I GGTNACC 1 cut(s) 998
EcoO65I GGTNACC 1 cut(s) 998
EcoRI GAATTC 2 cut(s) 64, 488
EcoRII CCWGG 1 cut(s) 1391
EcoRV GATATC 1 cut(s) 475
EcoT14I CCWWGG 1 cut(s) 874
EcoT22I ATGCAT 1 cut(s) 918
ErhI CCWWGG 1 cut(s) 874
FaeI CATG 6 cut(s) 27, 416, 815, 920, 1381, 1426
FaqI GGGAC 2 cut(s) 631, 694
FatI CATG 6 cut(s) 23, 412, 811, 916, 1377, 1422
FauI CCCGC 1 cut(s) 1171
Fnu4HI GCNGC 6 cut(s) 49, 52, 55, 58, 172, 990
FokI GGATG 1 cut(s) 226
Fsp4HI GCNGC 6 cut(s) 49, 52, 55, 58, 172, 990
FspBI CTAG 3 cut(s) 783, 1196, 1383
GlaI GCGC 1 cut(s) 6
GluI GCNGC 6 cut(s) 49, 52, 55, 58, 172, 990
HapII CCGG 5 cut(s) 521, 577, 973, 1094, 1114
HgaI GACGC 1 cut(s) 1396
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 2 cut(s) 358, 1407
Hin1II CATG 6 cut(s) 27, 416, 815, 920, 1381, 1426
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HindIII AAGCTT 1 cut(s) 1187
HinfI GANTC 9 cut(s) 386, 394, 420, 500, 524, 619, 815, 1310, 1322
HpaII CCGG 5 cut(s) 521, 577, 973, 1094, 1114
HphI GGTGA 4 cut(s) 482, 701, 992, 1118
Hpy166II GTNNAC 3 cut(s) 343, 535, 1363
Hpy188I TCNGA 3 cut(s) 182, 1032, 1309
Hpy188III TCNNGA 6 cut(s) 120, 413, 582, 812, 1319, 1411
Hpy8I GTNNAC 3 cut(s) 343, 535, 1363
HpyAV CCTTC 4 cut(s) 39, 106, 427, 716
HpyCH4III ACNGT 5 cut(s) 749, 1012, 1063, 1140, 1216
HpyCH4IV ACGT 4 cut(s) 358, 465, 627, 1200
HpyCH4V TGCA 4 cut(s) 336, 840, 916, 985
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 57, 1094, 1270
HpyF3I CTNAG 7 cut(s) 44, 108, 493, 498, 800, 1269, 1416
HpySE526I ACGT 4 cut(s) 358, 465, 627, 1200
Hsp92I GRCGYC 2 cut(s) 358, 1407
Hsp92II CATG 6 cut(s) 27, 416, 815, 920, 1381, 1426
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 5 cut(s) 122, 551, 865, 1077, 1354
LmnI GCTCC 2 cut(s) 562, 791
Lsp1109I GCAGC 6 cut(s) 60, 63, 66, 69, 158, 976
LweI GCATC 3 cut(s) 16, 903, 937
MaeI CTAG 3 cut(s) 783, 1196, 1383
MaeII ACGT 4 cut(s) 358, 465, 627, 1200
MaeIII GTNAC 3 cut(s) 929, 998, 1168
MalI GATC 5 cut(s) 124, 553, 867, 1079, 1356
MbiI CCGCTC 1 cut(s) 557
MboI GATC 5 cut(s) 122, 551, 865, 1077, 1354
MfeI CAATTG 1 cut(s) 453
MflI RGATCY 2 cut(s) 122, 551
MluCI AATT 5 cut(s) 64, 322, 453, 488, 1127
MlyI GAGTC 5 cut(s) 388, 395, 509, 613, 1304
MnlI CCTC 9 cut(s) 253, 415, 649, 712, 913, 1031, 1055, 1228, 1305
Mph1103I ATGCAT 1 cut(s) 918
MseI TTAA 3 cut(s) 72, 969, 1350
MslI CAYNNNNRTG 1 cut(s) 606
MspI CCGG 5 cut(s) 521, 577, 973, 1094, 1114
MspR9I CCNGG 3 cut(s) 1094, 1115, 1393
MunI CAATTG 1 cut(s) 453
MvaI CCWGG 1 cut(s) 1393
MwoI GCNNNNNNNGC 4 cut(s) 54, 57, 1094, 1270
NciI CCSGG 2 cut(s) 1094, 1115
NdeII GATC 5 cut(s) 122, 551, 865, 1077, 1354
NheI GCTAGC 1 cut(s) 782
NlaIII CATG 6 cut(s) 27, 416, 815, 920, 1381, 1426
NlaIV GGNNCC 1 cut(s) 1218
NmuCI GTSAC 2 cut(s) 998, 1168
NsiI ATGCAT 1 cut(s) 918
NspV TTCGAA 1 cut(s) 486
PagI TCATGA 2 cut(s) 412, 811
PfeI GAWTC 4 cut(s) 420, 524, 815, 1322
PflFI GACNNNGTC 1 cut(s) 1417
PfoI TCCNGGA 1 cut(s) 1391
PinAI ACCGGT 2 cut(s) 576, 972
PkrI GCNGC 6 cut(s) 50, 53, 56, 59, 173, 991
PleI GAGTC 5 cut(s) 388, 394, 508, 613, 1304
PpsI GAGTC 5 cut(s) 388, 394, 508, 613, 1304
PshAI GACNNNNGTC 1 cut(s) 385
Psp1406I AACGTT 1 cut(s) 627
Psp6I CCWGG 1 cut(s) 1391
PspEI GGTNACC 1 cut(s) 998
PspGI CCWGG 1 cut(s) 1391
PspN4I GGNNCC 1 cut(s) 1218
PspPI GGNCC 1 cut(s) 579
PsuI RGATCY 2 cut(s) 122, 551
PsyI GACNNNGTC 1 cut(s) 1417
RsaI GTAC 3 cut(s) 195, 464, 961
RsaNI GTAC 3 cut(s) 194, 463, 960
RseI CAYNNNNRTG 1 cut(s) 606
SaqAI TTAA 3 cut(s) 72, 969, 1350
SatI GCNGC 6 cut(s) 49, 52, 55, 58, 172, 990
Sau3AI GATC 5 cut(s) 122, 551, 865, 1077, 1354
Sau96I GGNCC 1 cut(s) 579
SchI GAGTC 5 cut(s) 388, 395, 509, 613, 1304
ScrFI CCNGG 3 cut(s) 1094, 1115, 1393
SfaNI GCATC 3 cut(s) 16, 903, 937
SfcI CTRYAG 1 cut(s) 1083
SfuI TTCGAA 1 cut(s) 486
SinI GGWCC 1 cut(s) 579
SmiMI CAYNNNNRTG 1 cut(s) 606
SmlI CTYRAG 2 cut(s) 383, 1289
SmoI CTYRAG 2 cut(s) 383, 1289
Sse9I AATT 5 cut(s) 64, 322, 453, 488, 1127
SsiI CCGC 3 cut(s) 288, 555, 1178
SspI AATATT 1 cut(s) 709
SspMI CTAG 3 cut(s) 783, 1196, 1383
StyD4I CCNGG 3 cut(s) 1092, 1113, 1391
StyI CCWWGG 1 cut(s) 874
TaaI ACNGT 5 cut(s) 749, 1012, 1063, 1140, 1216
TaiI ACGT 4 cut(s) 361, 468, 630, 1203
TaqI TCGA 5 cut(s) 366, 486, 566, 717, 1047
TaqII GACCGA 1 cut(s) 432
TasI AATT 5 cut(s) 64, 322, 453, 488, 1127
TfiI GAWTC 4 cut(s) 420, 524, 815, 1322
Tru1I TTAA 3 cut(s) 72, 969, 1350
Tru9I TTAA 3 cut(s) 72, 969, 1350
TscAI CASTG 1 cut(s) 868
TseFI GTSAC 2 cut(s) 998, 1168
TseI GCWGC 6 cut(s) 48, 51, 54, 57, 171, 989
Tsp45I GTSAC 2 cut(s) 998, 1168
TspDTI ATGAA 4 cut(s) 12, 401, 800, 1167
TspGWI ACGGA 1 cut(s) 917
TspRI CASTG 1 cut(s) 868
Tth111I GACNNNGTC 1 cut(s) 1417
VpaK11BI GGWCC 1 cut(s) 579
XapI RAATTY 2 cut(s) 64, 488
XspI CTAG 3 cut(s) 783, 1196, 1383
ZraI GACGTC 1 cut(s) 359
Zsp2I ATGCAT 1 cut(s) 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.