Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014062

Physical Location & Seq

Genomic Coordinates Reverse (-)

35902455 .. 35905256

Gene Structure 2802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G411000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGGCACATTTGCTTTCAACTTCGTGCTCTCTAAATTTTTCCTCTGGTTGTAGACCTTACACTAAACCATTGATCCAAGACTTTTTGGTATTTCCTACCTCTTTAACTTTTCGGACTTCTAAAACCCCATTTGGAAGGCTTCTCTTGCAAGGGGGGAGGTCACAAAGTACTTGCACAGTGCACGCAACCACACTCTCTCCAAGTAGGGAAGCCCCAAAGGAACCGAGCTATGGCGTCAATGAGAGCTCTGGGGGAGCATCTAAATCACAGCGGGTAATGGTCATTGGTGGAGATGGCTACTGTGGTTGGGCCACAGCCCTTCACCTATCCAAGAAAGGTTATGAGGTTGCCATTGTTGATAGCCTTGTACGCCGTCTCTTTGACCACCAGCTTGGTCTTGATTCCCTGACTCCAATCTCCTCCATCCATGATCGCATCCGTTGCTGGAAATCTCTCACTGGAAAATCCGTTGAACTCTACATTGGTGATGTTTGTGATTTTGAGTTCTTATCAGAAGCCTTCAAGTCATTTGAGCCTGATTCTGTTGTTCATTTTGGGGAACAGCGGTCTGCTCCTTACTCCATGATTGATAGGTCAAGAGCAGTATTTACACAGCAAAACAATGTGATGGGAACACTGAATGTTCTCTTTGCTATAAAAGAGTATAGAGAGGAGTGTCATCTAGTGAAGCTTGGGACCATGGGAGAATATGGGACTCCAAATATTGATATTGAAGAAGGTTACATAACAATTACTCATAATGGAAGAACAGATACTTTACCCTACCCCAAGCAAGCAAGCTCTTTCTACCATTTGAGTAAGGTTCATGATTCAAATAATATAGCCTTCACTTGCAAGGCTTGGGGGATTAGAGCCACTGACCTAAACCAAGGTGTGGTATATGGGGTGAGAACGGATGAAACCGAGATGCATGAAGAGCTCAGCAACAGGTTTGATTATGATGGAGTGTTTGGAACTGCATTAAACCGGTTCTGTGTTCAGGCTGCTGTTGGTCATCCACTTACTGTGTATGGCAAAGGGGGTCAGACCCGGGGATATCTTGACATCCGAGATACGGTTCAGTGTGTTGAGATTGCCATTGCAAATCCAGCAAAGGCTGGTGAGTTTAGGGTCTTCAATCAATTTACTGAGCAGTTCTCTGTCAATGAACTTGCTGCGCTTGTCACAAAAGCGGGAGAAAAGCTTGGACTTGATGTGCAAACCACATCTGTGCCAAACCCAAGAGTTGAAGCAGAGGAGCACTACTACAATGCCAAACACACCAAACTTATCGAGTTGGGACTTAAACCTCACCTTCTCTCAGACTCTCTTTTGGATTCATTGCTCAATTTTACTATCAAGTACAAGGATCGTGTTGACACAAAGCAAATAATGCCCAGTGTTTCTTGGAGAAAAATGGGGGCTAAGCCGAGAACTGTTACAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008146 GO:0008150 GO:0008152 GO:0008270 GO:0008610 GO:0009058 GO:0009247 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016740 GO:0016782 GO:0019899 GO:0019904 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0101016 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00520 ko00561 map00520 map00561

Pfam Domains

Protein Families

Epimerase

Protein Analysis

483

Amino Acids

53.58

Weight (kDa)

7.23

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33030
fragaria_vesca	FvH4_2g31750
malus_domestica	MD15G1058400.v1.1
prunus_persica	Prupe.1G411000_v2.0.a1 Prupe.1G411000_v2.0.a1 Prupe.1G411000_v2.0.a1
pyrus_communis	pycom15g05490
rosa_chinensis	RchiOBHm_Chr6g0311071
rosa_laevigata	RLG00000010438
rosa_multiflora	Rmu_sc0012235.1_g000003
rosa_roxburghii	Rroxscaffold_7G00158050
rosa_rugosa	Rorug06G0385100
rosa_samantha	Rh6AG499300 Rh6BG509700 Rh6CG515500 Rh6DG502100
rosa_wichuraiana	Rw6G043480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	895
AccI	GTMKAC	1 cut(s)	52
AciI	CCGC	3 cut(s)	271, 565, 1193
AclWI	GGATC	2 cut(s)	67, 1377
AcsI	RAATTY	1 cut(s)	34
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	3 cut(s)	169, 369, 1364
AfiI	CCNNNNNNNGG	3 cut(s)	230, 895, 1075
AgeI	ACCGGT	1 cut(s)	987
AgsI	TTSAA	7 cut(s)	18, 473, 523, 734, 834, 1138, 1250
AjuI	GAANNNNNNNTTGG	2 cut(s)	465, 497
AleI	CACNNNNGTG	1 cut(s)	1229
AluBI	AGCT	7 cut(s)	228, 246, 391, 691, 801, 940, 1204
AluI	AGCT	7 cut(s)	228, 246, 391, 691, 801, 940, 1204
Alw21I	GWGCWC	5 cut(s)	29, 183, 248, 942, 1263
Alw26I	GTCTC	1 cut(s)	380
Alw44I	GTGCAC	1 cut(s)	179
AlwI	GGATC	2 cut(s)	67, 1377
Ama87I	CYCGRG	1 cut(s)	1050
AoxI	GGCC	1 cut(s)	309
ApaLI	GTGCAC	1 cut(s)	179
ApeKI	GCWGC	2 cut(s)	1004, 1175
ApoI	RAATTY	1 cut(s)	34
AsiGI	ACCGGT	1 cut(s)	987
AspLEI	GCGC	1 cut(s)	1180
AspS9I	GGNCC	2 cut(s)	309, 696
AsuC2I	CCSGG	2 cut(s)	1051, 1052
AsuHPI	GGTGA	5 cut(s)	314, 497, 919, 1133, 1304
AvaI	CYCGRG	1 cut(s)	1050
AvaII	GGWCC	1 cut(s)	696
BaeGI	GKGCMC	1 cut(s)	183
BanII	GRGCYC	2 cut(s)	248, 942
BarI	GAAGNNNNNNTAC	2 cut(s)	757, 789
BbsI	GAAGAC	1 cut(s)	1126
Bbv12I	GWGCWC	5 cut(s)	29, 183, 248, 942, 1263
BbvI	GCAGC	2 cut(s)	991, 1162
BccI	CCATC	4 cut(s)	287, 431, 622, 956
BceAI	ACGGC	1 cut(s)	357
BcnI	CCSGG	2 cut(s)	1051, 1052
BcoDI	GTCTC	1 cut(s)	380
BfaI	CTAG	1 cut(s)	683
BisI	GCNGC	2 cut(s)	1005, 1176
BlpI	GCTNAGC	2 cut(s)	941, 1425
BlsI	GCNGC	2 cut(s)	1006, 1177
BmcAI	AGTACT	1 cut(s)	169
Bme1390I	CCNGG	2 cut(s)	1051, 1052
Bme18I	GGWCC	1 cut(s)	696
BmeT110I	CYCGRG	1 cut(s)	1050
BmgT120I	GGNCC	2 cut(s)	309, 696
BmiI	GGNNCC	2 cut(s)	222, 697
BmrFI	CCNGG	2 cut(s)	1051, 1052
BmrI	ACTGGG	1 cut(s)	1392
BmsI	GCATC	3 cut(s)	266, 444, 918
BmuI	ACTGGG	1 cut(s)	1392
BpiI	GAAGAC	1 cut(s)	1126
BplI	GAGNNNNNCTC	2 cut(s)	1142, 1174
Bpu1102I	GCTNAGC	2 cut(s)	941, 1425
BpuMI	CCSGG	2 cut(s)	1051, 1052
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	4 cut(s)	699, 889, 1050, 1051
BsaWI	WCCGGW	1 cut(s)	987
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 895, 1075
Bse118I	RCCGGY	1 cut(s)	987
Bse1I	ACTGG	2 cut(s)	463, 1398
Bse3DI	GCAATG	2 cut(s)	1098, 1340
BseDI	CCNNGG	4 cut(s)	699, 889, 1050, 1051
BseGI	GGATG	5 cut(s)	423, 435, 922, 1015, 1065
BseLI	CCNNNNNNNGG	3 cut(s)	230, 895, 1075
BseMI	GCAATG	2 cut(s)	1098, 1340
BseMII	CTCAG	3 cut(s)	955, 1140, 1335
BseNI	ACTGG	2 cut(s)	463, 1398
BseRI	GAGGAG	3 cut(s)	409, 686, 1271
BseSI	GKGCMC	1 cut(s)	183
BseXI	GCAGC	2 cut(s)	991, 1162
BshFI	GGCC	1 cut(s)	311
BshTI	ACCGGT	1 cut(s)	987
BsiHKAI	GWGCWC	5 cut(s)	29, 183, 248, 942, 1263
BsiHKCI	CYCGRG	1 cut(s)	1050
BsiSI	CCGG	2 cut(s)	988, 1051
BslFI	GGGAC	3 cut(s)	709, 727, 1314
BslI	CCNNNNNNNGG	3 cut(s)	230, 895, 1075
BsmAI	GTCTC	1 cut(s)	380
BsmBI	CGTCTC	1 cut(s)	380
BsmFI	GGGAC	3 cut(s)	709, 727, 1314
BsnI	GGCC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	1050
Bsp1286I	GDGCHC	5 cut(s)	29, 183, 248, 942, 1263
Bsp143I	GATC	3 cut(s)	72, 430, 1369
Bsp1720I	GCTNAGC	2 cut(s)	941, 1425
Bsp19I	CCATGG	1 cut(s)	699
BspACI	CCGC	3 cut(s)	271, 565, 1193
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	3 cut(s)	954, 1141, 1334
BspHI	TCATGA	1 cut(s)	826
BspLI	GGNNCC	2 cut(s)	222, 697
BspPI	GGATC	2 cut(s)	67, 1377
BspQI	GCTCTTC	1 cut(s)	930
BsrDI	GCAATG	2 cut(s)	1098, 1340
BsrFI	RCCGGY	1 cut(s)	987
BsrI	ACTGG	2 cut(s)	463, 1398
BssAI	RCCGGY	1 cut(s)	987
BssECI	CCNNGG	4 cut(s)	699, 889, 1050, 1051
BssMI	GATC	3 cut(s)	72, 430, 1369
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	2 cut(s)	699, 889
Bst4CI	ACNGT	5 cut(s)	178, 302, 1027, 1078, 1438
Bst6I	CTCTTC	1 cut(s)	930
BstACI	GRCGYC	1 cut(s)	234
BstAPI	GCANNNNNTGC	2 cut(s)	441, 1393
BstC8I	GCNNGC	3 cut(s)	183, 795, 799
BstDEI	CTNAG	4 cut(s)	941, 1149, 1321, 1425
BstDSI	CCRYGG	1 cut(s)	699
BstF5I	GGATG	5 cut(s)	423, 435, 922, 1015, 1065
BstHHI	GCGC	1 cut(s)	1180
BstKTI	GATC	3 cut(s)	75, 433, 1372
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	3 cut(s)	72, 430, 1369
BstMWI	GCNNNNNNNGC	6 cut(s)	145, 369, 441, 937, 1109, 1393
BstSCI	CCNGG	2 cut(s)	1049, 1050
BstSLI	GKGCMC	1 cut(s)	183
BstV1I	GCAGC	2 cut(s)	991, 1162
BstV2I	GAAGAC	1 cut(s)	1126
BstXI	CCANNNNNNTGG	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	311
BtgI	CCRYGG	1 cut(s)	699
BtsCI	GGATG	5 cut(s)	423, 435, 922, 1015, 1065
BtsIMutI	CAGTG	6 cut(s)	183, 456, 635, 876, 1088, 1405
Cac8I	GCNNGC	3 cut(s)	183, 795, 799
CciI	TCATGA	1 cut(s)	826
CfoI	GCGC	1 cut(s)	1180
Cfr10I	RCCGGY	1 cut(s)	987
Cfr13I	GGNCC	2 cut(s)	309, 696
Cfr9I	CCCGGG	1 cut(s)	1050
CseI	GACGC	1 cut(s)	223
Csp6I	GTAC	3 cut(s)	168, 368, 1363
CspAI	ACCGGT	1 cut(s)	987
CviAII	CATG	5 cut(s)	428, 583, 700, 827, 932
CviQI	GTAC	3 cut(s)	168, 368, 1363
DdeI	CTNAG	4 cut(s)	941, 1149, 1321, 1425
DpnI	GATC	3 cut(s)	74, 432, 1371
DpnII	GATC	3 cut(s)	72, 430, 1369
Eam1104I	CTCTTC	1 cut(s)	930
EarI	CTCTTC	1 cut(s)	930
Ecl136II	GAGCTC	2 cut(s)	246, 940
Eco130I	CCWWGG	2 cut(s)	699, 889
Eco24I	GRGCYC	2 cut(s)	248, 942
Eco32I	GATATC	1 cut(s)	1058
Eco47I	GGWCC	1 cut(s)	696
Eco53kI	GAGCTC	2 cut(s)	246, 940
Eco88I	CYCGRG	1 cut(s)	1050
EcoICRI	GAGCTC	2 cut(s)	246, 940
EcoRV	GATATC	1 cut(s)	1058
EcoT14I	CCWWGG	2 cut(s)	699, 889
EcoT22I	ATGCAT	1 cut(s)	933
EcoT38I	GRGCYC	2 cut(s)	248, 942
ErhI	CCWWGG	2 cut(s)	699, 889
Esp3I	CGTCTC	1 cut(s)	380
FaeI	CATG	5 cut(s)	431, 586, 703, 830, 935
FaqI	GGGAC	3 cut(s)	709, 727, 1314
FatI	CATG	5 cut(s)	427, 582, 699, 826, 931
FauI	CCCGC	2 cut(s)	264, 1186
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	2 cut(s)	1005, 1176
FokI	GGATG	5 cut(s)	410, 422, 929, 1002, 1052
FriOI	GRGCYC	2 cut(s)	248, 942
Fsp4HI	GCNGC	2 cut(s)	1005, 1176
FspBI	CTAG	1 cut(s)	683
GlaI	GCGC	1 cut(s)	1179
GluI	GCNGC	2 cut(s)	1005, 1176
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	2 cut(s)	988, 1051
HgaI	GACGC	1 cut(s)	223
HhaI	GCGC	1 cut(s)	1180
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	5 cut(s)	431, 586, 703, 830, 935
Hin6I	GCGC	1 cut(s)	1178
HinP1I	GCGC	1 cut(s)	1178
HincII	GTYRAC	1 cut(s)	1378
HindII	GTYRAC	1 cut(s)	1378
HindIII	AAGCTT	2 cut(s)	689, 1202
HinfI	GANTC	7 cut(s)	401, 409, 539, 715, 830, 1325, 1337
HpaII	CCGG	2 cut(s)	988, 1051
HphI	GGTGA	5 cut(s)	314, 497, 919, 1133, 1304
Hpy166II	GTNNAC	3 cut(s)	53, 181, 1378
Hpy188I	TCNGA	5 cut(s)	114, 514, 1047, 1070, 1324
Hpy188III	TCNNGA	4 cut(s)	398, 597, 827, 1061
Hpy8I	GTNNAC	3 cut(s)	53, 181, 1378
HpyAV	CCTTC	6 cut(s)	129, 329, 529, 731, 856, 1325
HpyCH4III	ACNGT	5 cut(s)	178, 302, 1027, 1078, 1438
HpyCH4V	TGCA	8 cut(s)	148, 174, 181, 855, 931, 980, 1103, 1219
HpyF10VI	GCNNNNNNNGC	6 cut(s)	145, 369, 441, 937, 1109, 1393
HpyF3I	CTNAG	4 cut(s)	941, 1149, 1321, 1425
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	5 cut(s)	431, 586, 703, 830, 935
HspAI	GCGC	1 cut(s)	1178
Kzo9I	GATC	3 cut(s)	72, 430, 1369
LguI	GCTCTTC	1 cut(s)	930
LmnI	GCTCC	3 cut(s)	254, 577, 1258
Lsp1109I	GCAGC	2 cut(s)	991, 1162
LweI	GCATC	3 cut(s)	266, 444, 918
MaeI	CTAG	1 cut(s)	683
MaeIII	GTNAC	4 cut(s)	159, 740, 1183, 1438
MalI	GATC	3 cut(s)	74, 432, 1371
MboI	GATC	3 cut(s)	72, 430, 1369
MboII	GAAGA	4 cut(s)	746, 777, 947, 1126
MhlI	GDGCHC	5 cut(s)	29, 183, 248, 942, 1263
MluCI	AATT	4 cut(s)	34, 750, 1142, 1348
MlyI	GAGTC	3 cut(s)	403, 709, 1319
MnlI	CCTC	8 cut(s)	52, 109, 150, 337, 430, 664, 1249, 1320
Mph1103I	ATGCAT	1 cut(s)	933
MseI	TTAA	3 cut(s)	104, 983, 1305
MslI	CAYNNNNRTG	1 cut(s)	1229
MspA1I	CMGCKG	2 cut(s)	271, 565
MspI	CCGG	2 cut(s)	988, 1051
MspR9I	CCNGG	2 cut(s)	1051, 1052
MwoI	GCNNNNNNNGC	6 cut(s)	145, 369, 441, 937, 1109, 1393
NciI	CCSGG	2 cut(s)	1051, 1052
NcoI	CCATGG	1 cut(s)	699
NdeII	GATC	3 cut(s)	72, 430, 1369
NlaIII	CATG	5 cut(s)	431, 586, 703, 830, 935
NlaIV	GGNNCC	2 cut(s)	222, 697
NmuCI	GTSAC	2 cut(s)	159, 1183
NsiI	ATGCAT	1 cut(s)	933
OliI	CACNNNNGTG	1 cut(s)	1229
PagI	TCATGA	1 cut(s)	826
PciSI	GCTCTTC	1 cut(s)	930
PfeI	GAWTC	4 cut(s)	401, 539, 830, 1337
PflMI	CCANNNNNTGG	1 cut(s)	895
PinAI	ACCGGT	1 cut(s)	987
PkrI	GCNGC	2 cut(s)	1006, 1177
PleI	GAGTC	3 cut(s)	403, 709, 1319
PpsI	GAGTC	3 cut(s)	403, 709, 1319
Psp124BI	GAGCTC	2 cut(s)	248, 942
PspN4I	GGNNCC	2 cut(s)	222, 697
PspPI	GGNCC	2 cut(s)	309, 696
RsaI	GTAC	3 cut(s)	169, 369, 1364
RsaNI	GTAC	3 cut(s)	168, 368, 1363
RseI	CAYNNNNRTG	1 cut(s)	1229
SacI	GAGCTC	2 cut(s)	248, 942
SapI	GCTCTTC	1 cut(s)	930
SaqAI	TTAA	3 cut(s)	104, 983, 1305
SatI	GCNGC	2 cut(s)	1005, 1176
Sau3AI	GATC	3 cut(s)	72, 430, 1369
Sau96I	GGNCC	2 cut(s)	309, 696
ScaI	AGTACT	1 cut(s)	169
SchI	GAGTC	3 cut(s)	403, 709, 1319
ScrFI	CCNGG	2 cut(s)	1051, 1052
SduI	GDGCHC	5 cut(s)	29, 183, 248, 942, 1263
SfaNI	GCATC	3 cut(s)	266, 444, 918
SinI	GGWCC	1 cut(s)	696
SmaI	CCCGGG	1 cut(s)	1052
SmiMI	CAYNNNNRTG	1 cut(s)	1229
Sse9I	AATT	4 cut(s)	34, 750, 1142, 1348
SsiI	CCGC	3 cut(s)	271, 565, 1193
SspI	AATATT	1 cut(s)	724
SspMI	CTAG	1 cut(s)	683
SstI	GAGCTC	2 cut(s)	248, 942
StyD4I	CCNGG	2 cut(s)	1049, 1050
StyI	CCWWGG	2 cut(s)	699, 889
TaaI	ACNGT	5 cut(s)	178, 302, 1027, 1078, 1438
TaqI	TCGA	1 cut(s)	1293
TasI	AATT	4 cut(s)	34, 750, 1142, 1348
TatI	WGTACW	2 cut(s)	167, 1362
TfiI	GAWTC	4 cut(s)	401, 539, 830, 1337
Tru1I	TTAA	3 cut(s)	104, 983, 1305
Tru9I	TTAA	3 cut(s)	104, 983, 1305
TscAI	CASTG	6 cut(s)	183, 463, 642, 883, 1088, 1405
TseFI	GTSAC	2 cut(s)	159, 1183
TseI	GCWGC	2 cut(s)	1004, 1175
Tsp45I	GTSAC	2 cut(s)	159, 1183
TspDTI	ATGAA	6 cut(s)	539, 815, 933, 948, 1182, 1329
TspGWI	ACGGA	3 cut(s)	428, 457, 929
TspMI	CCCGGG	1 cut(s)	1050
TspRI	CASTG	6 cut(s)	183, 463, 642, 883, 1088, 1405
Van91I	CCANNNNNTGG	1 cut(s)	895
VneI	GTGCAC	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	696
XapI	RAATTY	1 cut(s)	34
XmaI	CCCGGG	1 cut(s)	1050
XmiI	GTMKAC	1 cut(s)	52
XspI	CTAG	1 cut(s)	683
ZrmI	AGTACT	1 cut(s)	169
Zsp2I	ATGCAT	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.