FvH4_2g31750

UDP-sulfoquinovose synthase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
24278703 .. 24281217
2515 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g31750.t2

Sequence Viewer

Length: 1449 bp
ATGGCGCATTTGCTTTCAACTTCGTATTCTGTCAAATTCTCATCTGGATGTAAACCTTACACAAAGCCATTCATCCAAGACTCGGCCTTATTTCCCAAATCTGTTACTTTTCAGACATCCAAAACCCCATTTACAAGGCTCCTCTCACAAGGGAAGAGGTCGAGAAGTAACTGCACAGTGCGTGCCACCACACTCTCTGCGAGTAGGGAAGCTTCGAATGAACCGAGTCAGGGGGTGCATGAGAGCTCTAGTGAGCCATCTAAATCAAAGAGGGTCATGGTCATTGGTGGAGATGGCTACTGTGGCTGGGCCACTGCCCTTCACCTGTCCAAGAAAGGTTATGAGGTTGCCATTGTCGACAGCCTTGTCCGTCGTCTGTTTGACCAACAGCTTGGTATTGATTCCTTGACTCCAATCTCCTCCATCCATGATCGTCTCCGTTGTTGGAAAGCTCTCACTGGAAAATCTATTGAACTCTACATTGGTGATATTTGTGACTTTGAGTTCTTAACAGACGCCTTCAAGTCGTTTGAGCCTGAGGCTGTTGTTCATTTTGGGGAGCAGCGATCAGCCCCTTATTCCATGATTGATCGCTCAAGAGCAGTATATACACAGAATAACAATGTGATTGGAACCCTGAATGTGCTATTTGCTATTAAAGAGTTTGGAGAGCAGTGTCATCTAGTCAAGCTTGGGACCATGGGAGAATACGGAACTCCAAATATTGATATTGAGGAGGGTTACATAACAATTACTCATAACGGAAGGACAGATACTTTGCCCTACCCCAAGCAAGCAAGCTCTTTCTACCACTTGAGTAAGGTTCATGACTCAAACAACATAGCCTTTACTTGCAAAGCTTGGGGGATTAGAGCCACTGACCTCAATCAAGGAGTCGTATATGGTGTGAGAACAGATGAAACTGAGATGCATGAAGAGCTAATTAACCGGCTGGACTATGATGGAGTGTTTGGAACTGCATTAAATAGGTTCTGTGTTCAGGCTGCTGTTGGTCATCCGCTTACCGTGTATGGCAAAGGTGGCCAGACCAGGGGATATCTTGACATACGAGATACAGTCCAATGTGTTGAGATTGCCATTGCAAACCCGGCACAGGCTGGTGAGTTCCGGGTCTTCAATCAATTTACTGAGCAGTTTTCTGTCAATGAACTTGCTGCGCTTGTTACAAAAGCTGGAGAGAAGCTTGGACTTGATGTGCAGACCACATCAGTGCCAAACCCAAGAGTGGAAGCGGAGGAGCACTACTACAATGCCAAGCACACCAAACTTATCGAGTTGGGACTTAAACCTCACCTTCTTTCTGACTCTCTTTTGGATTCTTTGCTCAATTTTGCCATTAAATATGAGGATCGTGTAGACAAAAAGCAGATTATGCCTAGTGTTTCTTGGAGAAAAATTGGGGCCAGGCCGAAAACTGTTGCTGCATAG

Protein Analysis

483

Amino Acids

53.57

Weight (kDa)

7.61

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 92 - 318 1.5e-17 NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd PF16363 93 - 242 1.5e-14 GDP-mannose 4,6 dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014062)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 365
AccI GTMKAC 2 cut(s) 357, 1377
AciI CCGC 2 cut(s) 1019, 1253
AclWI GGATC 1 cut(s) 1377
AcoI YGGCCR 1 cut(s) 1042
AcsI RAATTY 1 cut(s) 35
AcyI GRCGYC 1 cut(s) 516
AfiI CCNNNNNNNGG 5 cut(s) 82, 230, 1051, 1114, 1246
AgsI TTSAA 4 cut(s) 18, 473, 523, 1138
AjnI CCWGG 2 cut(s) 1049, 1424
AjuI GAANNNNNNNTTGG 2 cut(s) 465, 497
AleI CACNNNNGTG 1 cut(s) 1229
Alw21I GWGCWC 2 cut(s) 248, 1263
Alw26I GTCTC 1 cut(s) 440
AlwI GGATC 1 cut(s) 1377
AoxI GGCC 5 cut(s) 84, 309, 1042, 1422, 1427
ApeKI GCWGC 4 cut(s) 562, 1004, 1175, 1442
ApoI RAATTY 1 cut(s) 35
ArsI GACNNNNNNTTYG 2 cut(s) 760, 792
AspLEI GCGC 2 cut(s) 7, 1180
AspS9I GGNCC 3 cut(s) 309, 696, 1422
AsuC2I CCSGG 2 cut(s) 1109, 1130
AsuHPI GGTGA 4 cut(s) 314, 497, 1133, 1304
AsuII TTCGAA 1 cut(s) 215
AvaII GGWCC 1 cut(s) 696
AxyI CCTNAGG 1 cut(s) 537
BalI TGGCCA 1 cut(s) 1044
BanII GRGCYC 1 cut(s) 248
BarI GAAGNNNNNNTAC 4 cut(s) 196, 228, 757, 789
BbsI GAAGAC 1 cut(s) 1126
Bbv12I GWGCWC 2 cut(s) 248, 1263
BbvI GCAGC 4 cut(s) 574, 991, 1162, 1429
BccI CCATC 4 cut(s) 265, 287, 431, 956
BciT130I CCWGG 2 cut(s) 1051, 1426
BcnI CCSGG 2 cut(s) 1109, 1130
BcoDI GTCTC 1 cut(s) 440
BfaI CTAG 3 cut(s) 249, 683, 1398
BisI GCNGC 4 cut(s) 563, 1005, 1176, 1443
BlsI GCNGC 4 cut(s) 564, 1006, 1177, 1444
Bme1390I CCNGG 4 cut(s) 1051, 1109, 1130, 1426
Bme18I GGWCC 1 cut(s) 696
BmgT120I GGNCC 3 cut(s) 309, 696, 1422
BmiI GGNNCC 4 cut(s) 140, 634, 697, 1423
BmrFI CCNGG 4 cut(s) 1051, 1109, 1130, 1426
BmsI GCATC 1 cut(s) 918
BpiI GAAGAC 1 cut(s) 1126
BpmI CTGGAG 1 cut(s) 1215
Bpu14I TTCGAA 1 cut(s) 215
BpuEI CTTGAG 2 cut(s) 580, 835
BpuMI CCSGG 2 cut(s) 1109, 1130
BsaHI GRCGYC 1 cut(s) 516
BsaJI CCNNGG 2 cut(s) 699, 1050
Bsc4I CCNNNNNNNGG 5 cut(s) 82, 230, 1051, 1114, 1246
Bse118I RCCGGY 1 cut(s) 948
Bse1I ACTGG 1 cut(s) 463
Bse21I CCTNAGG 1 cut(s) 537
Bse3DI GCAATG 1 cut(s) 1098
BseBI CCWGG 2 cut(s) 1051, 1426
BseDI CCNNGG 2 cut(s) 699, 1050
BseGI GGATG 5 cut(s) 53, 72, 116, 423, 1015
BseLI CCNNNNNNNGG 5 cut(s) 82, 230, 1051, 1114, 1246
BseMI GCAATG 1 cut(s) 1098
BseMII CTCAG 3 cut(s) 528, 915, 1140
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 4 cut(s) 131, 409, 749, 1271
BseXI GCAGC 4 cut(s) 574, 991, 1162, 1429
BseYI CCCAGC 1 cut(s) 306
BsgI GTGCAG 2 cut(s) 157, 1238
BshFI GGCC 5 cut(s) 86, 311, 1044, 1424, 1429
BsiHKAI GWGCWC 2 cut(s) 248, 1263
BsiSI CCGG 3 cut(s) 949, 1109, 1129
BslFI GGGAC 2 cut(s) 709, 1314
BslI CCNNNNNNNGG 5 cut(s) 82, 230, 1051, 1114, 1246
BsmAI GTCTC 1 cut(s) 440
BsmBI CGTCTC 1 cut(s) 440
BsmFI GGGAC 2 cut(s) 709, 1314
BsnI GGCC 5 cut(s) 86, 311, 1044, 1424, 1429
Bsp119I TTCGAA 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 248, 1263
Bsp143I GATC 4 cut(s) 430, 566, 589, 1369
Bsp19I CCATGG 1 cut(s) 699
BspACI CCGC 2 cut(s) 1019, 1253
BspANI GGCC 5 cut(s) 86, 311, 1044, 1424, 1429
BspCNI CTCAG 3 cut(s) 529, 916, 1141
BspHI TCATGA 1 cut(s) 826
BspLI GGNNCC 4 cut(s) 140, 634, 697, 1423
BspPI GGATC 1 cut(s) 1377
BspQI GCTCTTC 1 cut(s) 930
BspT104I TTCGAA 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 1098
BsrFI RCCGGY 1 cut(s) 948
BsrI ACTGG 1 cut(s) 463
BssAI RCCGGY 1 cut(s) 948
BssECI CCNNGG 2 cut(s) 699, 1050
BssMI GATC 4 cut(s) 430, 566, 589, 1369
BssNI GRCGYC 1 cut(s) 516
BssT1I CCWWGG 1 cut(s) 699
Bst2UI CCWGG 2 cut(s) 1051, 1426
Bst4CI ACNGT 5 cut(s) 178, 302, 1027, 1078, 1438
Bst6I CTCTTC 2 cut(s) 149, 930
BstACI GRCGYC 1 cut(s) 516
BstAPI GCANNNNNTGC 1 cut(s) 1393
BstBI TTCGAA 1 cut(s) 215
BstC8I GCNNGC 3 cut(s) 183, 795, 799
BstDEI CTNAG 3 cut(s) 537, 924, 1149
BstDSI CCRYGG 1 cut(s) 699
BstF5I GGATG 5 cut(s) 53, 72, 116, 423, 1015
BstHHI GCGC 2 cut(s) 7, 1180
BstKTI GATC 4 cut(s) 433, 569, 592, 1372
BstMAI GTCTC 1 cut(s) 440
BstMBI GATC 4 cut(s) 430, 566, 589, 1369
BstMWI GCNNNNNNNGC 5 cut(s) 303, 937, 1041, 1109, 1393
BstNI CCWGG 2 cut(s) 1051, 1426
BstSCI CCNGG 4 cut(s) 1049, 1107, 1128, 1424
BstV1I GCAGC 4 cut(s) 574, 991, 1162, 1429
BstV2I GAAGAC 1 cut(s) 1126
BstXI CCANNNNNNTGG 1 cut(s) 392
Bsu36I CCTNAGG 1 cut(s) 537
BsuRI GGCC 5 cut(s) 86, 311, 1044, 1424, 1429
BtgI CCRYGG 1 cut(s) 699
BtsCI GGATG 5 cut(s) 53, 72, 116, 423, 1015
BtsI GCAGTG 2 cut(s) 312, 680
BtsIMutI CAGTG 6 cut(s) 183, 312, 456, 680, 876, 1236
Cac8I GCNNGC 3 cut(s) 183, 795, 799
CciI TCATGA 1 cut(s) 826
CfoI GCGC 2 cut(s) 7, 1180
Cfr10I RCCGGY 1 cut(s) 948
Cfr13I GGNCC 3 cut(s) 309, 696, 1422
CseI GACGC 1 cut(s) 524
CviAII CATG 7 cut(s) 239, 277, 428, 583, 700, 827, 932
DdeI CTNAG 3 cut(s) 537, 924, 1149
DpnI GATC 4 cut(s) 432, 568, 591, 1371
DpnII GATC 4 cut(s) 430, 566, 589, 1369
DrdI GACNNNNNNGTC 1 cut(s) 365
DseDI GACNNNNNNGTC 1 cut(s) 365
EaeI YGGCCR 1 cut(s) 1042
Eam1104I CTCTTC 2 cut(s) 149, 930
EarI CTCTTC 2 cut(s) 149, 930
Ecl136II GAGCTC 1 cut(s) 246
Eco130I CCWWGG 1 cut(s) 699
Eco24I GRGCYC 1 cut(s) 248
Eco32I GATATC 1 cut(s) 1058
Eco47I GGWCC 1 cut(s) 696
Eco53kI GAGCTC 1 cut(s) 246
Eco81I CCTNAGG 1 cut(s) 537
EcoICRI GAGCTC 1 cut(s) 246
EcoRII CCWGG 2 cut(s) 1049, 1424
EcoRV GATATC 1 cut(s) 1058
EcoT14I CCWWGG 1 cut(s) 699
EcoT22I ATGCAT 1 cut(s) 933
EcoT38I GRGCYC 1 cut(s) 248
ErhI CCWWGG 1 cut(s) 699
Esp3I CGTCTC 1 cut(s) 440
FaeI CATG 7 cut(s) 242, 280, 431, 586, 703, 830, 935
FaqI GGGAC 2 cut(s) 709, 1314
FatI CATG 7 cut(s) 238, 276, 427, 582, 699, 826, 931
FblI GTMKAC 2 cut(s) 357, 1377
Fnu4HI GCNGC 4 cut(s) 563, 1005, 1176, 1443
FokI GGATG 5 cut(s) 59, 60, 103, 410, 1002
FriOI GRGCYC 1 cut(s) 248
Fsp4HI GCNGC 4 cut(s) 563, 1005, 1176, 1443
FspBI CTAG 3 cut(s) 249, 683, 1398
GlaI GCGC 2 cut(s) 6, 1179
GluI GCNGC 4 cut(s) 563, 1005, 1176, 1443
GsaI CCCAGC 1 cut(s) 310
GsuI CTGGAG 1 cut(s) 1215
HaeIII GGCC 5 cut(s) 86, 311, 1044, 1424, 1429
HapII CCGG 3 cut(s) 949, 1109, 1129
HgaI GACGC 1 cut(s) 524
HhaI GCGC 2 cut(s) 7, 1180
Hin1I GRCGYC 1 cut(s) 516
Hin1II CATG 7 cut(s) 242, 280, 431, 586, 703, 830, 935
Hin6I GCGC 2 cut(s) 5, 1178
HinP1I GCGC 2 cut(s) 5, 1178
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HindIII AAGCTT 4 cut(s) 210, 689, 858, 1202
HinfI GANTC 8 cut(s) 80, 226, 401, 409, 830, 894, 1325, 1337
HpaII CCGG 3 cut(s) 949, 1109, 1129
HphI GGTGA 4 cut(s) 314, 497, 1133, 1304
Hpy166II GTNNAC 3 cut(s) 53, 358, 1378
Hpy188I TCNGA 2 cut(s) 114, 1324
Hpy188III TCNNGA 5 cut(s) 45, 162, 597, 827, 1061
Hpy8I GTNNAC 3 cut(s) 53, 358, 1378
Hpy99I CGWCG 1 cut(s) 375
HpyAV CCTTC 4 cut(s) 329, 529, 759, 1325
HpyCH4III ACNGT 5 cut(s) 178, 302, 1027, 1078, 1438
HpyCH4V TGCA 8 cut(s) 174, 238, 855, 931, 980, 1103, 1219, 1445
HpyF10VI GCNNNNNNNGC 5 cut(s) 303, 937, 1041, 1109, 1393
HpyF3I CTNAG 3 cut(s) 537, 924, 1149
Hsp92I GRCGYC 1 cut(s) 516
Hsp92II CATG 7 cut(s) 242, 280, 431, 586, 703, 830, 935
HspAI GCGC 2 cut(s) 5, 1178
Kzo9I GATC 4 cut(s) 430, 566, 589, 1369
LguI GCTCTTC 1 cut(s) 930
LmnI GCTCC 3 cut(s) 144, 559, 1258
Lsp1109I GCAGC 4 cut(s) 574, 991, 1162, 1429
LweI GCATC 1 cut(s) 918
MaeI CTAG 3 cut(s) 249, 683, 1398
MaeIII GTNAC 5 cut(s) 103, 167, 494, 740, 1183
MalI GATC 4 cut(s) 432, 568, 591, 1371
MboI GATC 4 cut(s) 430, 566, 589, 1369
MboII GAAGA 3 cut(s) 166, 947, 1126
MhlI GDGCHC 2 cut(s) 248, 1263
MlsI TGGCCA 1 cut(s) 1044
MluCI AATT 6 cut(s) 35, 750, 942, 1142, 1348, 1416
MluNI TGGCCA 1 cut(s) 1044
MlyI GAGTC 6 cut(s) 74, 235, 403, 824, 903, 1319
MmeI TCCRAC 1 cut(s) 425
Mox20I TGGCCA 1 cut(s) 1044
Mph1103I ATGCAT 1 cut(s) 933
MscI TGGCCA 1 cut(s) 1044
MseI TTAA 6 cut(s) 509, 657, 945, 983, 1305, 1359
MslI CAYNNNNRTG 2 cut(s) 46, 1229
Msp20I TGGCCA 1 cut(s) 1044
MspI CCGG 3 cut(s) 949, 1109, 1129
MspR9I CCNGG 4 cut(s) 1051, 1109, 1130, 1426
MvaI CCWGG 2 cut(s) 1051, 1426
MwoI GCNNNNNNNGC 5 cut(s) 303, 937, 1041, 1109, 1393
NciI CCSGG 2 cut(s) 1109, 1130
NcoI CCATGG 1 cut(s) 699
NdeII GATC 4 cut(s) 430, 566, 589, 1369
NlaIII CATG 7 cut(s) 242, 280, 431, 586, 703, 830, 935
NlaIV GGNNCC 4 cut(s) 140, 634, 697, 1423
NmeAIII GCCGAG 1 cut(s) 62
NmuCI GTSAC 1 cut(s) 494
NsiI ATGCAT 1 cut(s) 933
NspV TTCGAA 1 cut(s) 215
OliI CACNNNNGTG 1 cut(s) 1229
PagI TCATGA 1 cut(s) 826
PciSI GCTCTTC 1 cut(s) 930
PcsI WCGNNNNNNNCGW 1 cut(s) 221
PfeI GAWTC 2 cut(s) 401, 1337
PkrI GCNGC 4 cut(s) 564, 1006, 1177, 1444
PleI GAGTC 6 cut(s) 74, 234, 403, 824, 902, 1319
PpsI GAGTC 6 cut(s) 74, 234, 403, 824, 902, 1319
Psp124BI GAGCTC 1 cut(s) 248
Psp6I CCWGG 2 cut(s) 1049, 1424
PspFI CCCAGC 1 cut(s) 306
PspGI CCWGG 2 cut(s) 1049, 1424
PspN4I GGNNCC 4 cut(s) 140, 634, 697, 1423
PspPI GGNCC 3 cut(s) 309, 696, 1422
RseI CAYNNNNRTG 2 cut(s) 46, 1229
SacI GAGCTC 1 cut(s) 248
SalI GTCGAC 1 cut(s) 356
SapI GCTCTTC 1 cut(s) 930
SaqAI TTAA 6 cut(s) 509, 657, 945, 983, 1305, 1359
SatI GCNGC 4 cut(s) 563, 1005, 1176, 1443
Sau3AI GATC 4 cut(s) 430, 566, 589, 1369
Sau96I GGNCC 3 cut(s) 309, 696, 1422
SchI GAGTC 6 cut(s) 74, 235, 403, 824, 903, 1319
ScrFI CCNGG 4 cut(s) 1051, 1109, 1130, 1426
SduI GDGCHC 2 cut(s) 248, 1263
SfaNI GCATC 1 cut(s) 918
SfuI TTCGAA 1 cut(s) 215
SinI GGWCC 1 cut(s) 696
SmiMI CAYNNNNRTG 2 cut(s) 46, 1229
SmlI CTYRAG 2 cut(s) 595, 814
SmoI CTYRAG 2 cut(s) 595, 814
Sse9I AATT 6 cut(s) 35, 750, 942, 1142, 1348, 1416
SsiI CCGC 2 cut(s) 1019, 1253
SspI AATATT 1 cut(s) 724
SspMI CTAG 3 cut(s) 249, 683, 1398
SstI GAGCTC 1 cut(s) 248
StyD4I CCNGG 4 cut(s) 1049, 1107, 1128, 1424
StyI CCWWGG 1 cut(s) 699
TaaI ACNGT 5 cut(s) 178, 302, 1027, 1078, 1438
TaqI TCGA 4 cut(s) 161, 215, 357, 1293
TasI AATT 6 cut(s) 35, 750, 942, 1142, 1348, 1416
TfiI GAWTC 2 cut(s) 401, 1337
Tru1I TTAA 6 cut(s) 509, 657, 945, 983, 1305, 1359
Tru9I TTAA 6 cut(s) 509, 657, 945, 983, 1305, 1359
TscAI CASTG 6 cut(s) 183, 319, 463, 680, 883, 1236
TseFI GTSAC 1 cut(s) 494
TseI GCWGC 4 cut(s) 562, 1004, 1175, 1442
Tsp45I GTSAC 1 cut(s) 494
TspDTI ATGAA 7 cut(s) 61, 234, 539, 815, 933, 948, 1182
TspGWI ACGGA 4 cut(s) 359, 428, 726, 777
TspRI CASTG 6 cut(s) 183, 319, 463, 680, 883, 1236
VpaK11BI GGWCC 1 cut(s) 696
XapI RAATTY 1 cut(s) 35
XmiI GTMKAC 2 cut(s) 357, 1377
XspI CTAG 3 cut(s) 249, 683, 1398
Zsp2I ATGCAT 1 cut(s) 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.