Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0014062

Physical Location & Seq

Genomic Coordinates Forward (+)

65763938 .. 65766356

Gene Structure 2419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG502100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGGCACATTTGCTTTCAACTTCGTATTCTGTAAAATTCTCCTCTGGCTGTAAACCTTCCACAAAACCATTGATCCAAGACTCGGTTGTATTTCCCAAGTCTGTTACTTTTCAGACATCCAAAACCCCATTTACAAGGCTCCTCTTGCAAGCGCAGAGGTCACGAAGTAACTGCACAGTGTGTGCTACCACGCTCTCTGCAAGTCGGGAAGCCTCAAATGAACCCAGTCAGGTGGTGCATCAGAGTTCTAGTGAACCATCCAAATCAAAGAGGGTCATGGTCATTGGTGGAGACGGCTACTGTGGTTGGGCCACAGCCCTTCACCTGTCCAAGAAAGGTTATGAGGTTGCCATTGTTGACAGCCTTGTCCGTCGTCTATTTGACCAACAGCTTGGTATCGATTCCTTGACTCCAATCTCCTCCATCCATGATCGTCTCCGTTGTTGGAAAGCTCTCACTGGAAAATCTATTGAACTCTACATTGGTGATATCTGTGACTTTGAGTTCTTAACAGACGCCTTCAAGTCGTTTGAGCCTGAGGCTGTCGTTCATTTTGGGGAACAGCGGTCAGCTCCTTATTCCATGATTGATCGGTCAAGAGCAGTATATACTCAGAATAACAATGTGATTGGAACCCTTAATGTGCTATTTGCTATAAAAGAGTTTGGAGAGCAGTGTCATCTAGTCAAGCTTGGGACTATGGGAGAATACGGAACTCCAAATATTGATATCGAGGAGGGTTACATAACAATTACTCATAATGGAAGGACAGATACTTTGCCCTACCCCAAGCAAGCAAGCTCTTTCTACCATTTGAGTAAGGTTCATGATTCAAACAACATAGCCTTTACTTGCAAAGCTTGGGGGATTAGAGCCACTGACCTCAATCAAGGAGTAGTATATGGTGTGATAACAGATGAAACTGAGATGCATGAAGAGCTAATTAACCGGTTGGACTATGATGGAGTGTTTGGAACTGCATTAAATAGGTTCTGCGTTCAGGCTGCTGTTGGCCATCCGCTTACCGTGTATGGCAAAGGTGGCCAGACCAGGGGATATCTTGACATACGAGATACAGTCCAATGTGTTGAGATTGCCATTGCAAACCCAGCACAGGCTGGTGAGTTTCGGGTCTTCAATCAATTTACTGAGCAGTTTTCTGTCAATGAACTTGCTGCGCTTGTTACAAAAGCTGGAGAGAAACTTGGACTTGATGTGCAGACTACATCAGTGCCAAACCCAAGAGTTGAAGCGGAGGAGCACTACTACAATGCCAAGCACACCAAACTTATTGAGTTGGGACTTAAACCTCACCTTCTTTCCGACTCTCTTTTGGATTCTTTGCTCAATTTTGCCATTAAATATGAGGATCGTGTAGACAAAAAGCAGATCATGCCCAGTGTTTCTTGGAGGAAAATTGGGGCCAAGCCGAAAACTGTTGCCGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008146 GO:0008150 GO:0008152 GO:0008270 GO:0008610 GO:0009058 GO:0009247 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016740 GO:0016782 GO:0019899 GO:0019904 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0101016 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00520 ko00561 map00520 map00561

Pfam Domains

Protein Families

Epimerase

Protein Analysis

482

Amino Acids

53.43

Weight (kDa)

6.92

Isoelectric Point (pI)

35.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	92 - 380	2.3e-22	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	93 - 403	1.6e-16	GDP-mannose 4,6 dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33030
fragaria_vesca	FvH4_2g31750
malus_domestica	MD15G1058400.v1.1
prunus_persica	Prupe.1G411000_v2.0.a1 Prupe.1G411000_v2.0.a1 Prupe.1G411000_v2.0.a1
pyrus_communis	pycom15g05490
rosa_chinensis	RchiOBHm_Chr6g0311071
rosa_laevigata	RLG00000010438
rosa_multiflora	Rmu_sc0012235.1_g000003
rosa_roxburghii	Rroxscaffold_7G00158050
rosa_rugosa	Rorug06G0385100
rosa_samantha	Rh6AG499300 Rh6BG509700 Rh6CG515500 Rh6DG502100
rosa_wichuraiana	Rw6G043480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	365
AccI	GTMKAC	1 cut(s)	1377
AciI	CCGC	4 cut(s)	565, 1019, 1253, 1443
AclWI	GGATC	2 cut(s)	67, 1377
AcoI	YGGCCR	2 cut(s)	1012, 1042
AcsI	RAATTY	1 cut(s)	35
AcyI	GRCGYC	1 cut(s)	516
AdeI	CACNNNGTG	1 cut(s)	180
AfiI	CCNNNNNNNGG	3 cut(s)	82, 1051, 1114
AgeI	ACCGGT	1 cut(s)	948
AgsI	TTSAA	6 cut(s)	18, 473, 523, 834, 1138, 1250
AjnI	CCWGG	1 cut(s)	1049
AjuI	GAANNNNNNNTTGG	2 cut(s)	465, 497
AluBI	AGCT	8 cut(s)	391, 452, 572, 691, 801, 860, 940, 1193
AluI	AGCT	8 cut(s)	391, 452, 572, 691, 801, 860, 940, 1193
Alw21I	GWGCWC	1 cut(s)	1263
Alw26I	GTCTC	2 cut(s)	285, 440
AlwI	GGATC	2 cut(s)	67, 1377
AoxI	GGCC	4 cut(s)	309, 1012, 1042, 1422
ApeKI	GCWGC	2 cut(s)	1004, 1175
ApoI	RAATTY	1 cut(s)	35
ArsI	GACNNNNNNTTYG	2 cut(s)	760, 792
AsiGI	ACCGGT	1 cut(s)	948
AspLEI	GCGC	2 cut(s)	154, 1180
AspS9I	GGNCC	2 cut(s)	309, 1422
AsuHPI	GGTGA	4 cut(s)	314, 497, 1133, 1304
AxyI	CCTNAGG	1 cut(s)	537
BalI	TGGCCA	2 cut(s)	1014, 1044
BarI	GAAGNNNNNNTAC	2 cut(s)	757, 789
BbsI	GAAGAC	1 cut(s)	1126
Bbv12I	GWGCWC	1 cut(s)	1263
BbvI	GCAGC	2 cut(s)	991, 1162
BccI	CCATC	4 cut(s)	265, 431, 956, 1023
BceAI	ACGGC	1 cut(s)	310
BcgI	CGANNNNNNTGC	2 cut(s)	153, 187
BciT130I	CCWGG	1 cut(s)	1051
BcoDI	GTCTC	2 cut(s)	285, 440
BfaI	CTAG	2 cut(s)	249, 683
BisI	GCNGC	3 cut(s)	1005, 1176, 1443
BlsI	GCNGC	3 cut(s)	1006, 1177, 1444
Bme1390I	CCNGG	1 cut(s)	1051
BmgT120I	GGNCC	2 cut(s)	309, 1422
BmiI	GGNNCC	3 cut(s)	140, 634, 1423
BmrFI	CCNGG	1 cut(s)	1051
BmrI	ACTGGG	2 cut(s)	219, 1392
BmsI	GCATC	2 cut(s)	247, 918
BmuI	ACTGGG	2 cut(s)	219, 1392
BpiI	GAAGAC	1 cut(s)	1126
BpmI	CTGGAG	1 cut(s)	1215
Bsa29I	ATCGAT	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	516
BsaJI	CCNNGG	1 cut(s)	1050
BsaWI	WCCGGW	1 cut(s)	948
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 1051, 1114
Bse118I	RCCGGY	1 cut(s)	948
Bse1I	ACTGG	3 cut(s)	225, 463, 1398
Bse21I	CCTNAGG	1 cut(s)	537
Bse3DI	GCAATG	1 cut(s)	1098
BseBI	CCWGG	1 cut(s)	1051
BseCI	ATCGAT	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	1050
BseGI	GGATG	4 cut(s)	116, 257, 423, 1015
BseLI	CCNNNNNNNGG	3 cut(s)	82, 1051, 1114
BseMI	GCAATG	1 cut(s)	1098
BseMII	CTCAG	4 cut(s)	528, 626, 915, 1140
BseNI	ACTGG	3 cut(s)	225, 463, 1398
BseRI	GAGGAG	5 cut(s)	31, 131, 409, 749, 1271
BseXI	GCAGC	2 cut(s)	991, 1162
BseYI	CCCAGC	1 cut(s)	1108
BsgI	GTGCAG	2 cut(s)	157, 1238
BshFI	GGCC	4 cut(s)	311, 1014, 1044, 1424
BshTI	ACCGGT	1 cut(s)	948
BshVI	ATCGAT	1 cut(s)	399
BsiHKAI	GWGCWC	1 cut(s)	1263
BsiSI	CCGG	1 cut(s)	949
BslFI	GGGAC	2 cut(s)	709, 1314
BslI	CCNNNNNNNGG	3 cut(s)	82, 1051, 1114
BsmAI	GTCTC	2 cut(s)	285, 440
BsmBI	CGTCTC	2 cut(s)	285, 440
BsmFI	GGGAC	2 cut(s)	709, 1314
BsnI	GGCC	4 cut(s)	311, 1014, 1044, 1424
Bsp1286I	GDGCHC	1 cut(s)	1263
Bsp143I	GATC	5 cut(s)	72, 430, 589, 1369, 1389
BspACI	CCGC	4 cut(s)	565, 1019, 1253, 1443
BspANI	GGCC	4 cut(s)	311, 1014, 1044, 1424
BspCNI	CTCAG	4 cut(s)	529, 625, 916, 1141
BspDI	ATCGAT	1 cut(s)	399
BspHI	TCATGA	1 cut(s)	826
BspLI	GGNNCC	3 cut(s)	140, 634, 1423
BspPI	GGATC	2 cut(s)	67, 1377
BspQI	GCTCTTC	1 cut(s)	930
BsrDI	GCAATG	1 cut(s)	1098
BsrFI	RCCGGY	1 cut(s)	948
BsrI	ACTGG	3 cut(s)	225, 463, 1398
BssAI	RCCGGY	1 cut(s)	948
BssECI	CCNNGG	1 cut(s)	1050
BssMI	GATC	5 cut(s)	72, 430, 589, 1369, 1389
BssNI	GRCGYC	1 cut(s)	516
Bst2UI	CCWGG	1 cut(s)	1051
Bst4CI	ACNGT	5 cut(s)	178, 302, 1027, 1078, 1438
Bst6I	CTCTTC	1 cut(s)	930
BstACI	GRCGYC	1 cut(s)	516
BstAPI	GCANNNNNTGC	1 cut(s)	1393
BstC8I	GCNNGC	3 cut(s)	150, 795, 799
BstDEI	CTNAG	4 cut(s)	537, 612, 924, 1149
BstF5I	GGATG	4 cut(s)	116, 257, 423, 1015
BstHHI	GCGC	2 cut(s)	154, 1180
BstKTI	GATC	5 cut(s)	75, 433, 592, 1372, 1392
BstMAI	GTCTC	2 cut(s)	285, 440
BstMBI	GATC	5 cut(s)	72, 430, 589, 1369, 1389
BstMWI	GCNNNNNNNGC	5 cut(s)	145, 937, 1041, 1109, 1393
BstNI	CCWGG	1 cut(s)	1051
BstSCI	CCNGG	1 cut(s)	1049
BstV1I	GCAGC	2 cut(s)	991, 1162
BstV2I	GAAGAC	1 cut(s)	1126
BstXI	CCANNNNNNTGG	2 cut(s)	232, 392
Bsu15I	ATCGAT	1 cut(s)	399
Bsu36I	CCTNAGG	1 cut(s)	537
BsuRI	GGCC	4 cut(s)	311, 1014, 1044, 1424
BsuTUI	ATCGAT	1 cut(s)	399
BtsCI	GGATG	4 cut(s)	116, 257, 423, 1015
BtsI	GCAGTG	1 cut(s)	680
BtsIMutI	CAGTG	6 cut(s)	183, 456, 680, 876, 1236, 1405
Cac8I	GCNNGC	3 cut(s)	150, 795, 799
CciI	TCATGA	1 cut(s)	826
CfoI	GCGC	2 cut(s)	154, 1180
Cfr10I	RCCGGY	1 cut(s)	948
Cfr13I	GGNCC	2 cut(s)	309, 1422
ClaI	ATCGAT	1 cut(s)	399
CseI	GACGC	1 cut(s)	524
CspAI	ACCGGT	1 cut(s)	948
CviAII	CATG	6 cut(s)	277, 428, 583, 827, 932, 1393
DdeI	CTNAG	4 cut(s)	537, 612, 924, 1149
DpnI	GATC	5 cut(s)	74, 432, 591, 1371, 1391
DpnII	GATC	5 cut(s)	72, 430, 589, 1369, 1389
DraIII	CACNNNGTG	1 cut(s)	180
DrdI	GACNNNNNNGTC	1 cut(s)	365
DseDI	GACNNNNNNGTC	1 cut(s)	365
EaeI	YGGCCR	2 cut(s)	1012, 1042
Eam1104I	CTCTTC	1 cut(s)	930
EarI	CTCTTC	1 cut(s)	930
Eco32I	GATATC	3 cut(s)	490, 730, 1058
Eco81I	CCTNAGG	1 cut(s)	537
EcoRII	CCWGG	1 cut(s)	1049
EcoRV	GATATC	3 cut(s)	490, 730, 1058
EcoT22I	ATGCAT	1 cut(s)	933
Esp3I	CGTCTC	2 cut(s)	285, 440
FaeI	CATG	6 cut(s)	280, 431, 586, 830, 935, 1396
FaqI	GGGAC	2 cut(s)	709, 1314
FatI	CATG	6 cut(s)	276, 427, 582, 826, 931, 1392
FblI	GTMKAC	1 cut(s)	1377
Fnu4HI	GCNGC	3 cut(s)	1005, 1176, 1443
FokI	GGATG	4 cut(s)	103, 244, 410, 1002
Fsp4HI	GCNGC	3 cut(s)	1005, 1176, 1443
FspBI	CTAG	2 cut(s)	249, 683
GlaI	GCGC	2 cut(s)	153, 1179
GluI	GCNGC	3 cut(s)	1005, 1176, 1443
GsaI	CCCAGC	1 cut(s)	1112
GsuI	CTGGAG	1 cut(s)	1215
HaeIII	GGCC	4 cut(s)	311, 1014, 1044, 1424
HapII	CCGG	1 cut(s)	949
HgaI	GACGC	1 cut(s)	524
HhaI	GCGC	2 cut(s)	154, 1180
Hin1I	GRCGYC	1 cut(s)	516
Hin1II	CATG	6 cut(s)	280, 431, 586, 830, 935, 1396
Hin6I	GCGC	2 cut(s)	152, 1178
HinP1I	GCGC	2 cut(s)	152, 1178
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HindIII	AAGCTT	2 cut(s)	689, 858
HinfI	GANTC	6 cut(s)	80, 401, 409, 830, 1325, 1337
HpaII	CCGG	1 cut(s)	949
HphI	GGTGA	4 cut(s)	314, 497, 1133, 1304
Hpy166II	GTNNAC	4 cut(s)	53, 254, 358, 1378
Hpy188I	TCNGA	4 cut(s)	114, 243, 615, 1324
Hpy188III	TCNNGA	5 cut(s)	162, 206, 597, 827, 1061
Hpy8I	GTNNAC	4 cut(s)	53, 254, 358, 1378
Hpy99I	CGWCG	1 cut(s)	375
HpyAV	CCTTC	5 cut(s)	66, 329, 529, 759, 1325
HpyCH4III	ACNGT	5 cut(s)	178, 302, 1027, 1078, 1438
HpyCH4V	TGCA	9 cut(s)	148, 174, 200, 238, 855, 931, 980, 1103, 1219
HpyF10VI	GCNNNNNNNGC	5 cut(s)	145, 937, 1041, 1109, 1393
HpyF3I	CTNAG	4 cut(s)	537, 612, 924, 1149
Hsp92I	GRCGYC	1 cut(s)	516
Hsp92II	CATG	6 cut(s)	280, 431, 586, 830, 935, 1396
HspAI	GCGC	2 cut(s)	152, 1178
Kzo9I	GATC	5 cut(s)	72, 430, 589, 1369, 1389
LguI	GCTCTTC	1 cut(s)	930
LmnI	GCTCC	3 cut(s)	144, 577, 1258
Lsp1109I	GCAGC	2 cut(s)	991, 1162
LweI	GCATC	2 cut(s)	247, 918
MaeI	CTAG	2 cut(s)	249, 683
MaeIII	GTNAC	6 cut(s)	103, 159, 167, 494, 740, 1183
MalI	GATC	5 cut(s)	74, 432, 591, 1371, 1391
MboI	GATC	5 cut(s)	72, 430, 589, 1369, 1389
MboII	GAAGA	2 cut(s)	947, 1126
MhlI	GDGCHC	1 cut(s)	1263
MlsI	TGGCCA	2 cut(s)	1014, 1044
MluCI	AATT	6 cut(s)	35, 750, 942, 1142, 1348, 1416
MluNI	TGGCCA	2 cut(s)	1014, 1044
MlyI	GAGTC	3 cut(s)	74, 403, 1319
MmeI	TCCRAC	3 cut(s)	425, 933, 1347
Mox20I	TGGCCA	2 cut(s)	1014, 1044
Mph1103I	ATGCAT	1 cut(s)	933
MscI	TGGCCA	2 cut(s)	1014, 1044
MseI	TTAA	6 cut(s)	509, 639, 945, 983, 1305, 1359
Msp20I	TGGCCA	2 cut(s)	1014, 1044
MspA1I	CMGCKG	1 cut(s)	565
MspI	CCGG	1 cut(s)	949
MspR9I	CCNGG	1 cut(s)	1051
MvaI	CCWGG	1 cut(s)	1051
MwoI	GCNNNNNNNGC	5 cut(s)	145, 937, 1041, 1109, 1393
NdeII	GATC	5 cut(s)	72, 430, 589, 1369, 1389
NlaIII	CATG	6 cut(s)	280, 431, 586, 830, 935, 1396
NlaIV	GGNNCC	3 cut(s)	140, 634, 1423
NmuCI	GTSAC	2 cut(s)	159, 494
NsiI	ATGCAT	1 cut(s)	933
PagI	TCATGA	1 cut(s)	826
PciSI	GCTCTTC	1 cut(s)	930
PfeI	GAWTC	3 cut(s)	401, 830, 1337
PinAI	ACCGGT	1 cut(s)	948
PkrI	GCNGC	3 cut(s)	1006, 1177, 1444
PleI	GAGTC	3 cut(s)	74, 403, 1319
PpsI	GAGTC	3 cut(s)	74, 403, 1319
Psp6I	CCWGG	1 cut(s)	1049
PspFI	CCCAGC	1 cut(s)	1108
PspGI	CCWGG	1 cut(s)	1049
PspN4I	GGNNCC	3 cut(s)	140, 634, 1423
PspPI	GGNCC	2 cut(s)	309, 1422
SapI	GCTCTTC	1 cut(s)	930
SaqAI	TTAA	6 cut(s)	509, 639, 945, 983, 1305, 1359
SatI	GCNGC	3 cut(s)	1005, 1176, 1443
Sau3AI	GATC	5 cut(s)	72, 430, 589, 1369, 1389
Sau96I	GGNCC	2 cut(s)	309, 1422
SchI	GAGTC	3 cut(s)	74, 403, 1319
ScrFI	CCNGG	1 cut(s)	1051
SduI	GDGCHC	1 cut(s)	1263
SfaNI	GCATC	2 cut(s)	247, 918
Sse9I	AATT	6 cut(s)	35, 750, 942, 1142, 1348, 1416
SsiI	CCGC	4 cut(s)	565, 1019, 1253, 1443
SspI	AATATT	1 cut(s)	724
SspMI	CTAG	2 cut(s)	249, 683
StyD4I	CCNGG	1 cut(s)	1049
TaaI	ACNGT	5 cut(s)	178, 302, 1027, 1078, 1438
TaqI	TCGA	2 cut(s)	399, 732
TaqII	GACCGA	1 cut(s)	582
TasI	AATT	6 cut(s)	35, 750, 942, 1142, 1348, 1416
TauI	GCSGC	1 cut(s)	1445
TfiI	GAWTC	3 cut(s)	401, 830, 1337
Tru1I	TTAA	6 cut(s)	509, 639, 945, 983, 1305, 1359
Tru9I	TTAA	6 cut(s)	509, 639, 945, 983, 1305, 1359
TscAI	CASTG	6 cut(s)	183, 463, 680, 883, 1236, 1405
TseFI	GTSAC	2 cut(s)	159, 494
TseI	GCWGC	2 cut(s)	1004, 1175
Tsp45I	GTSAC	2 cut(s)	159, 494
TspDTI	ATGAA	6 cut(s)	234, 539, 815, 933, 948, 1182
TspGWI	ACGGA	3 cut(s)	359, 428, 726
TspRI	CASTG	6 cut(s)	183, 463, 680, 883, 1236, 1405
XapI	RAATTY	1 cut(s)	35
XmiI	GTMKAC	1 cut(s)	1377
XspI	CTAG	2 cut(s)	249, 683
Zsp2I	ATGCAT	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.