MD15G1058400.v1.1

UDP-sulfoquinovose synthase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
3911781 .. 3914023
2243 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1058400.v1.1.491

Sequence Viewer

Length: 1452 bp
ATGGCTCATTTGCTTTCAACTTCCTGCTCTCTAAAATTCTCCTCTGGTGGCAAACCATACACCAAACCATTGATCCAACACTCGATCGCATTTCCTTCCTCTTTAACTTTTCAGACTTCCAAAACCCCATTTGGGAGGATCATCCTGCAAGGGGAGAGGTCACGGAGTGGTACTTGCACGGTGCGTGCAACCACACTCTCTGCAAGTAGGGAAGCCCCAAATGAACCGAGCTACGGCGCTAATGAGAGTTCAGGCGGAGCTTCCAAACCACAGCGGGTGATGGTCATTGGTGGAGATGGCTACTGTGGTTGGGCCACAGCCCTTCACCTATCCAAGAAAGGTTATGAGGTTGCCATTGTTGATAGCCTTGTGCGCCGTCTCTTTGACCACCAGCTCGGTCTTGGTTCCCTGACTCCAATCGCCTCTATCCATGATCGTATCCGTTGTTGGAAAGCTCTCACTGGAAAGTCCATTGAGCTCTGCATTGGTGATGTTTGTGATTTCGAGTTCTTGTCAGAAGCCTTCAAGTCATTTGAACCTGATTCTGTTGTTCATTTCGGGGAACAGCGGTCTGCCCCTTACTCCATGATTGATCGGTCCAGAGCAGTATTCACGCAGAATAACAACGTGATTGGAACTCTGAATGTTCTCTTTGCTATAAAAGAGTTCAGAGAGGAGTGTCATCTCGTGAAGCTCGGGACCATGGGAGAATATGGGACTCCAAATATTGACATTGAGGAGGGTTTCATTACAATTACTCATAACGGGAGAACAGATACTTTGCCCTTCCCGAAGCAAGCGAGCTCTTTCTACCATTTGAGCAAGGTTCACGATTCGAATAATATAGCCTTCACTTGCAAGGCTTGGGGGATTAGAGCCACTGATCTAAATCAAGGAGTGGTATATGGAGTGAGAACGGATGAAACCGAGATGCATGAAGAGCTCAATAACAGGTTTGATTATGATGGAGTTTTTGGAACTGCATTAAACCGGTTCTGCGTGCAGGCTGCTGTCGGTCATCCACTTACCGTGTATGGCAAAGGGGGTCAGACCAGGGGATATCTTGACATACGAGACACAGTTCAGTGTGTTGAAATTGCCATCGCAAACCCAGCAAAGGCCGGTGAGTTTAGGGTCTTCAATCAATTTACTGAGCAGTTTTCCGTCAATCAACTTGCCGCACTTGTTACCAAAGCTGGAGAGAAGCTCGGAATTGATGTGCAAACCACCTCTGTCCCAAACCCTAGAGTTGAAGCTGAGGAGCACTACTACAACGCTAAACACACTAAACTTATTGAATTGGGACTGAAACCGCACCTTCTTTCGGACTCTCTTTTGGATTCATTGCTCAATTTTGCTGTTAGGTACAAGGATCGCGTCGACACAAAGCAGATAATGCCCAGTGTATCTTGGAGAAAAATGGGGGCCAAGCCGAAGACTGTCACAGCATAG

Protein Analysis

484

Amino Acids

53.29

Weight (kDa)

8.23

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 93 - 381 7.6e-22 NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd PF16363 94 - 396 1.5e-15 GDP-mannose 4,6 dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014062)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1380
AccII CGCG 1 cut(s) 1377
AciI CCGC 5 cut(s) 255, 274, 568, 1179, 1313
AclWI GGATC 3 cut(s) 67, 146, 1380
AcsI RAATTY 1 cut(s) 35
AdeI CACNNNGTG 1 cut(s) 167
AfaI GTAC 2 cut(s) 172, 1367
AfiI CCNNNNNNNGG 5 cut(s) 132, 151, 233, 1117, 1324
AgeI ACCGGT 1 cut(s) 990
AgsI TTSAA 7 cut(s) 18, 526, 536, 1094, 1141, 1253, 1298
AjnI CCWGG 1 cut(s) 1052
Alw21I GWGCWC 4 cut(s) 480, 806, 945, 1266
Alw26I GTCTC 2 cut(s) 383, 1068
AlwI GGATC 3 cut(s) 67, 146, 1380
Ama87I CYCGRG 1 cut(s) 695
AoxI GGCC 3 cut(s) 312, 1119, 1425
ApeKI GCWGC 1 cut(s) 1007
ApoI RAATTY 1 cut(s) 35
AsiGI ACCGGT 1 cut(s) 990
AspLEI GCGC 2 cut(s) 239, 375
AspS9I GGNCC 4 cut(s) 312, 597, 699, 1425
AsuHPI GGTGA 4 cut(s) 289, 317, 500, 1136
AsuII TTCGAA 1 cut(s) 836
AvaI CYCGRG 1 cut(s) 695
AvaII GGWCC 2 cut(s) 597, 699
BanII GRGCYC 3 cut(s) 480, 806, 945
BauI CACGAG 1 cut(s) 686
BbsI GAAGAC 2 cut(s) 1129, 1442
Bbv12I GWGCWC 4 cut(s) 480, 806, 945, 1266
BbvCI CCTCAGC 1 cut(s) 1257
BbvI GCAGC 1 cut(s) 994
BccI CCATC 4 cut(s) 274, 290, 959, 1109
BceAI ACGGC 2 cut(s) 250, 360
BciT130I CCWGG 1 cut(s) 1054
BciVI GTATCC 1 cut(s) 449
BcoDI GTCTC 2 cut(s) 383, 1068
BfaI CTAG 1 cut(s) 1245
BfoI RGCGCY 1 cut(s) 240
BfuI GTATCC 1 cut(s) 449
BisI GCNGC 2 cut(s) 1008, 1179
BlsI GCNGC 2 cut(s) 1009, 1180
Bme1390I CCNGG 1 cut(s) 1054
Bme18I GGWCC 2 cut(s) 597, 699
BmeT110I CYCGRG 1 cut(s) 695
BmgT120I GGNCC 4 cut(s) 312, 597, 699, 1425
BmiI GGNNCC 3 cut(s) 406, 700, 1426
BmrFI CCNGG 1 cut(s) 1054
BmrI ACTGGG 1 cut(s) 1395
BmsI GCATC 1 cut(s) 921
BmuI ACTGGG 1 cut(s) 1395
BpiI GAAGAC 2 cut(s) 1129, 1442
BplI GAGNNNNNCTC 2 cut(s) 1191, 1223
BpmI CTGGAG 1 cut(s) 1218
Bpu10I CCTNAGC 1 cut(s) 1257
Bpu14I TTCGAA 1 cut(s) 836
BsaBI GATNNNNATC 1 cut(s) 888
BsaJI CCNNGG 2 cut(s) 702, 1053
BsaWI WCCGGW 1 cut(s) 990
Bsc4I CCNNNNNNNGG 5 cut(s) 132, 151, 233, 1117, 1324
Bse118I RCCGGY 2 cut(s) 990, 1121
Bse1I ACTGG 2 cut(s) 466, 1401
Bse3DI GCAATG 1 cut(s) 1343
Bse8I GATNNNNATC 1 cut(s) 888
BseBI CCWGG 1 cut(s) 1054
BseDI CCNNGG 2 cut(s) 702, 1053
BseGI GGATG 3 cut(s) 141, 925, 1018
BseJI GATNNNNATC 1 cut(s) 888
BseLI CCNNNNNNNGG 5 cut(s) 132, 151, 233, 1117, 1324
BseMI GCAATG 1 cut(s) 1343
BseMII CTCAG 2 cut(s) 1143, 1248
BseNI ACTGG 2 cut(s) 466, 1401
BseRI GAGGAG 4 cut(s) 31, 689, 752, 1274
BseXI GCAGC 1 cut(s) 994
BseYI CCCAGC 1 cut(s) 1111
BsgI GTGCAG 1 cut(s) 1022
Bsh1236I CGCG 1 cut(s) 1377
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 3 cut(s) 314, 1121, 1427
BshTI ACCGGT 1 cut(s) 990
BsiEI CGRYCG 1 cut(s) 87
BsiHKAI GWGCWC 4 cut(s) 480, 806, 945, 1266
BsiHKCI CYCGRG 1 cut(s) 695
BsiSI CCGG 2 cut(s) 991, 1122
BslFI GGGAC 4 cut(s) 712, 730, 1220, 1317
BslI CCNNNNNNNGG 5 cut(s) 132, 151, 233, 1117, 1324
BsmAI GTCTC 2 cut(s) 383, 1068
BsmBI CGTCTC 1 cut(s) 383
BsmFI GGGAC 4 cut(s) 712, 730, 1220, 1317
BsnI GGCC 3 cut(s) 314, 1121, 1427
BsoBI CYCGRG 1 cut(s) 695
Bsp119I TTCGAA 1 cut(s) 836
Bsp1286I GDGCHC 4 cut(s) 480, 806, 945, 1266
Bsp143I GATC 7 cut(s) 72, 84, 138, 433, 592, 883, 1372
Bsp19I CCATGG 1 cut(s) 702
BspACI CCGC 5 cut(s) 255, 274, 568, 1179, 1313
BspANI GGCC 3 cut(s) 314, 1121, 1427
BspCNI CTCAG 2 cut(s) 1144, 1249
BspFNI CGCG 1 cut(s) 1377
BspLI GGNNCC 3 cut(s) 406, 700, 1426
BspPI GGATC 3 cut(s) 67, 146, 1380
BspQI GCTCTTC 1 cut(s) 933
BspT104I TTCGAA 1 cut(s) 836
BsrDI GCAATG 1 cut(s) 1343
BsrFI RCCGGY 2 cut(s) 990, 1121
BsrI ACTGG 2 cut(s) 466, 1401
BssAI RCCGGY 2 cut(s) 990, 1121
BssECI CCNNGG 2 cut(s) 702, 1053
BssMI GATC 7 cut(s) 72, 84, 138, 433, 592, 883, 1372
BssSI CACGAG 1 cut(s) 686
BssT1I CCWWGG 1 cut(s) 702
Bst2BI CACGAG 1 cut(s) 686
Bst2UI CCWGG 1 cut(s) 1054
Bst4CI ACNGT 5 cut(s) 181, 305, 1030, 1081, 1441
Bst6I CTCTTC 1 cut(s) 933
BstAPI GCANNNNNTGC 1 cut(s) 1396
BstBI TTCGAA 1 cut(s) 836
BstC8I GCNNGC 5 cut(s) 186, 798, 802, 1001, 1005
BstDEI CTNAG 2 cut(s) 1152, 1257
BstDSI CCRYGG 1 cut(s) 702
BstF5I GGATG 3 cut(s) 141, 925, 1018
BstFNI CGCG 1 cut(s) 1377
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 2 cut(s) 239, 375
BstKTI GATC 7 cut(s) 75, 87, 141, 436, 595, 886, 1375
BstMAI GTCTC 2 cut(s) 383, 1068
BstMBI GATC 7 cut(s) 72, 84, 138, 433, 592, 883, 1372
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 4 cut(s) 372, 940, 1112, 1396
BstNI CCWGG 1 cut(s) 1054
BstSCI CCNGG 1 cut(s) 1052
BstUI CGCG 1 cut(s) 1377
BstV1I GCAGC 1 cut(s) 994
BstV2I GAAGAC 2 cut(s) 1129, 1442
BsuI GTATCC 1 cut(s) 449
BsuRI GGCC 3 cut(s) 314, 1121, 1427
BtgI CCRYGG 1 cut(s) 702
BtgZI GCGATG 1 cut(s) 1087
BtsCI GGATG 3 cut(s) 141, 925, 1018
BtsIMutI CAGTG 4 cut(s) 459, 879, 1091, 1408
Cac8I GCNNGC 5 cut(s) 186, 798, 802, 1001, 1005
CfoI GCGC 2 cut(s) 239, 375
Cfr10I RCCGGY 2 cut(s) 990, 1121
Cfr13I GGNCC 4 cut(s) 312, 597, 699, 1425
CseI GACGC 1 cut(s) 1366
Csp6I GTAC 2 cut(s) 171, 1366
CspAI ACCGGT 1 cut(s) 990
CviAII CATG 4 cut(s) 431, 586, 703, 935
CviQI GTAC 2 cut(s) 171, 1366
DdeI CTNAG 2 cut(s) 1152, 1257
DpnI GATC 7 cut(s) 74, 86, 140, 435, 594, 885, 1374
DpnII GATC 7 cut(s) 72, 84, 138, 433, 592, 883, 1372
DraIII CACNNNGTG 1 cut(s) 167
Eam1104I CTCTTC 1 cut(s) 933
EarI CTCTTC 1 cut(s) 933
EciI GGCGGA 1 cut(s) 270
Ecl136II GAGCTC 3 cut(s) 478, 804, 943
Eco130I CCWWGG 1 cut(s) 702
Eco24I GRGCYC 3 cut(s) 480, 806, 945
Eco32I GATATC 1 cut(s) 1061
Eco47I GGWCC 2 cut(s) 597, 699
Eco53kI GAGCTC 3 cut(s) 478, 804, 943
Eco88I CYCGRG 1 cut(s) 695
EcoICRI GAGCTC 3 cut(s) 478, 804, 943
EcoRII CCWGG 1 cut(s) 1052
EcoRV GATATC 1 cut(s) 1061
EcoT14I CCWWGG 1 cut(s) 702
EcoT22I ATGCAT 1 cut(s) 936
EcoT38I GRGCYC 3 cut(s) 480, 806, 945
ErhI CCWWGG 1 cut(s) 702
Esp3I CGTCTC 1 cut(s) 383
FaeI CATG 4 cut(s) 434, 589, 706, 938
FaqI GGGAC 4 cut(s) 712, 730, 1220, 1317
FatI CATG 4 cut(s) 430, 585, 702, 934
FauI CCCGC 1 cut(s) 267
FblI GTMKAC 1 cut(s) 1380
Fnu4HI GCNGC 2 cut(s) 1008, 1179
FokI GGATG 3 cut(s) 128, 932, 1005
FriOI GRGCYC 3 cut(s) 480, 806, 945
Fsp4HI GCNGC 2 cut(s) 1008, 1179
FspBI CTAG 1 cut(s) 1245
GlaI GCGC 2 cut(s) 238, 374
GluI GCNGC 2 cut(s) 1008, 1179
GsaI CCCAGC 1 cut(s) 1115
GsuI CTGGAG 1 cut(s) 1218
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 3 cut(s) 314, 1121, 1427
HapII CCGG 2 cut(s) 991, 1122
HgaI GACGC 1 cut(s) 1366
HhaI GCGC 2 cut(s) 239, 375
Hin1II CATG 4 cut(s) 434, 589, 706, 938
Hin6I GCGC 2 cut(s) 237, 373
HinP1I GCGC 2 cut(s) 237, 373
HincII GTYRAC 1 cut(s) 1381
HindII GTYRAC 1 cut(s) 1381
HinfI GANTC 6 cut(s) 412, 542, 718, 833, 1328, 1340
HpaII CCGG 2 cut(s) 991, 1122
HphI GGTGA 4 cut(s) 289, 317, 500, 1136
Hpy166II GTNNAC 2 cut(s) 829, 1381
Hpy188I TCNGA 7 cut(s) 114, 517, 642, 671, 1050, 1211, 1327
Hpy188III TCNNGA 6 cut(s) 600, 688, 697, 790, 830, 1064
Hpy8I GTNNAC 2 cut(s) 829, 1381
Hpy99I CGWCG 1 cut(s) 1382
HpyAV CCTTC 6 cut(s) 105, 332, 532, 796, 859, 1328
HpyCH4III ACNGT 5 cut(s) 181, 305, 1030, 1081, 1441
HpyCH4IV ACGT 1 cut(s) 627
HpyF10VI GCNNNNNNNGC 4 cut(s) 372, 940, 1112, 1396
HpyF3I CTNAG 2 cut(s) 1152, 1257
HpySE526I ACGT 1 cut(s) 627
Hsp92II CATG 4 cut(s) 434, 589, 706, 938
HspAI GCGC 2 cut(s) 237, 373
Kzo9I GATC 7 cut(s) 72, 84, 138, 433, 592, 883, 1372
LguI GCTCTTC 1 cut(s) 933
LmnI GCTCC 2 cut(s) 257, 1261
Lsp1109I GCAGC 1 cut(s) 994
LweI GCATC 1 cut(s) 921
MaeI CTAG 1 cut(s) 1245
MaeII ACGT 1 cut(s) 627
MaeIII GTNAC 3 cut(s) 159, 1186, 1441
MalI GATC 7 cut(s) 74, 86, 140, 435, 594, 885, 1374
MboI GATC 7 cut(s) 72, 84, 138, 433, 592, 883, 1372
MboII GAAGA 3 cut(s) 950, 1129, 1447
MhlI GDGCHC 4 cut(s) 480, 806, 945, 1266
MluCI AATT 7 cut(s) 35, 753, 1095, 1145, 1212, 1298, 1351
MlyI GAGTC 3 cut(s) 406, 712, 1322
MmeI TCCRAC 2 cut(s) 100, 428
Mph1103I ATGCAT 1 cut(s) 936
MseI TTAA 2 cut(s) 104, 986
MspA1I CMGCKG 2 cut(s) 274, 568
MspI CCGG 2 cut(s) 991, 1122
MspR9I CCNGG 1 cut(s) 1054
MvaI CCWGG 1 cut(s) 1054
MvnI CGCG 1 cut(s) 1377
MwoI GCNNNNNNNGC 4 cut(s) 372, 940, 1112, 1396
NcoI CCATGG 1 cut(s) 702
NdeII GATC 7 cut(s) 72, 84, 138, 433, 592, 883, 1372
NlaIII CATG 4 cut(s) 434, 589, 706, 938
NlaIV GGNNCC 3 cut(s) 406, 700, 1426
NmuCI GTSAC 2 cut(s) 159, 1441
NsiI ATGCAT 1 cut(s) 936
NspV TTCGAA 1 cut(s) 836
PciSI GCTCTTC 1 cut(s) 933
PfeI GAWTC 3 cut(s) 542, 833, 1340
PinAI ACCGGT 1 cut(s) 990
PkrI GCNGC 2 cut(s) 1009, 1180
Ple19I CGATCG 1 cut(s) 87
PleI GAGTC 3 cut(s) 406, 712, 1322
PpsI GAGTC 3 cut(s) 406, 712, 1322
Psp124BI GAGCTC 3 cut(s) 480, 806, 945
Psp6I CCWGG 1 cut(s) 1052
PspFI CCCAGC 1 cut(s) 1111
PspGI CCWGG 1 cut(s) 1052
PspN4I GGNNCC 3 cut(s) 406, 700, 1426
PspPI GGNCC 4 cut(s) 312, 597, 699, 1425
PvuI CGATCG 1 cut(s) 87
RsaI GTAC 2 cut(s) 172, 1367
RsaNI GTAC 2 cut(s) 171, 1366
SacI GAGCTC 3 cut(s) 480, 806, 945
SalI GTCGAC 1 cut(s) 1379
SapI GCTCTTC 1 cut(s) 933
SaqAI TTAA 2 cut(s) 104, 986
SatI GCNGC 2 cut(s) 1008, 1179
Sau3AI GATC 7 cut(s) 72, 84, 138, 433, 592, 883, 1372
Sau96I GGNCC 4 cut(s) 312, 597, 699, 1425
SchI GAGTC 3 cut(s) 406, 712, 1322
ScrFI CCNGG 1 cut(s) 1054
SduI GDGCHC 4 cut(s) 480, 806, 945, 1266
SfaNI GCATC 1 cut(s) 921
SfuI TTCGAA 1 cut(s) 836
SinI GGWCC 2 cut(s) 597, 699
Sse9I AATT 7 cut(s) 35, 753, 1095, 1145, 1212, 1298, 1351
SsiI CCGC 5 cut(s) 255, 274, 568, 1179, 1313
SspI AATATT 1 cut(s) 727
SspMI CTAG 1 cut(s) 1245
SstI GAGCTC 3 cut(s) 480, 806, 945
StyD4I CCNGG 1 cut(s) 1052
StyI CCWWGG 1 cut(s) 702
TaaI ACNGT 5 cut(s) 181, 305, 1030, 1081, 1441
TaiI ACGT 1 cut(s) 630
TaqI TCGA 4 cut(s) 83, 504, 836, 1380
TaqII GACCGA 3 cut(s) 386, 585, 1004
TasI AATT 7 cut(s) 35, 753, 1095, 1145, 1212, 1298, 1351
TauI GCSGC 1 cut(s) 1181
TfiI GAWTC 3 cut(s) 542, 833, 1340
Tru1I TTAA 2 cut(s) 104, 986
Tru9I TTAA 2 cut(s) 104, 986
TscAI CASTG 4 cut(s) 466, 886, 1091, 1408
TseFI GTSAC 2 cut(s) 159, 1441
TseI GCWGC 1 cut(s) 1007
Tsp45I GTSAC 2 cut(s) 159, 1441
TspDTI ATGAA 6 cut(s) 237, 542, 736, 936, 951, 1332
TspGWI ACGGA 4 cut(s) 178, 431, 932, 1153
TspRI CASTG 4 cut(s) 466, 886, 1091, 1408
VpaK11BI GGWCC 2 cut(s) 597, 699
XapI RAATTY 1 cut(s) 35
XcmI CCANNNNNNNNNTGG 1 cut(s) 398
XmiI GTMKAC 1 cut(s) 1380
XspI CTAG 1 cut(s) 1245
Zsp2I ATGCAT 1 cut(s) 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.