Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009970

Physical Location & Seq

Genomic Coordinates Reverse (-)

16108643 .. 16110877

Gene Structure 2235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G33490.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGAATGTCCGTTTTATGATTGTGTTGATGGTAATGTCTCTGGTTCTGGGTTTTTCGTCGGCAGTTGATTTCAGATGGAGGAAAACTGCAGGATTCTCAGATAGATTCACCAGAGCTGTTTCTTCAGTCGTGTTCCCAGTTCATGGCAACGTTTATCCTCTTGGGTACTATAATGTAACCATCAACATAGGACAACCACCAAGACCTTATTATCTTGATCTTGATACTGGTAGTGATCTCACTTGGCTCCAATGTGATGCTCCTTGTGTTCGTTGCTTGGAGGCGCCTCATCCACTGTATCAGCCTAGTAGTGATCTTATTCCTTGCAATGATCCACTGTGTAAGGCTTTGCATTTGAATAGTAATCAGAGATGTGAGACTCCAGAGCAATGTGACTATGAGGTTGAGTATGCTGATGGAGGATCTTCTCTCGGTGTTCTTGTTAGAGATGTCTTCTCTATGAACTATACACAGGGTCTCCGGCTCACTCCCCGTCTTGCTCTAGGTTGTGGATACGATCAAATCCCAGGGGCTTCGAGTCATCATCCTCTAGATGGAGTATTAGGGCTTGGTAGGGGGAAAGTAAGCATTCTGTCACAGCTTCATAGCCAAGGTTATGTAAAGAATGTTATCGGTCATTGCCTAAGCAGTTTAGGTGGAGGAATTCTCTTTTTTGGCGACGATCTTTATGATTCTTCAAGAGTCTCATGGACACCAATGTCTCGTGAATACTCAAAACACTACTCTCCTGCAATGGGAGGGGAACTTCTATTCGGGGGAAGAACAACAGGATTGAAGAATCTATTAACAGTATTTGACAGTGGAAGTTCTTACACATACTTCAATTCCAAGGCATACCAAGCCGTAACATATTTGCTAAAGAGAGAACTAAGCGGAAAACCGTTGAAAGAAGCACGGGATGACCACACGCTGCCTCTATGCTGGCAAGGACGTAGACCATTCATGAGCATTGAAGAAGTCAAGAAGTATTTCAAGCCTCTAGCTCTTAGCTTCAAAACAGGCTGGAGATCAAAAACTCTGTTTGAGATACCCCCAGAAGCTTATCTAATCATTTCTATGAAGGGGAATGTATGTTTGGGAATCTTGAATGGCACAGAAATAGGTCTCCAGAACCTAAACCTCATCGGCGGTACAGTCTTTATATTACATACATTGGCAATTTCCTTATCTTGGTTTCGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

401

Amino Acids

44.59

Weight (kDa)

8.21

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	60 - 230	3.9e-50	Xylanase inhibitor N-terminal
Asp	PF00026	60 - 406	8.9e-15	Eukaryotic aspartyl protease
TAXi_C	PF14541	272 - 406	5e-14	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33490 AT4G33490
fragaria_vesca	FvH4_1g25160 FvH4_1g25160 FvH4_1g25160 FvH4_1g25160
malus_domestica	MD15G1136700.v1.1
prunus_persica	Prupe.4G279700_v2.0.a1 Prupe.4G279700_v2.0.a1 Prupe.4G279700_v2.0.a1
pyrus_communis	pycom15g12340 pycom15g12360
rosa_chinensis	RchiOBHm_Chr2g0122891
rosa_laevigata	RLG00000018722
rosa_roxburghii	Rroxscaffold_2G00121010
rosa_rugosa	Rorug02G0242800
rosa_samantha	Rh2AG301900 Rh2BG309500 Rh2CG288600 Rh2DG326000
rosa_wichuraiana	Rw2G023970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	718
AccB1I	GGYRCC	1 cut(s)	283
AccB7I	CCANNNNNTGG	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	955
AciI	CCGC	2 cut(s)	894, 1149
AclI	AACGTT	1 cut(s)	150
AclWI	GGATC	2 cut(s)	326, 430
AcsI	RAATTY	1 cut(s)	663
AcuI	CTGAAG	1 cut(s)	108
AcyI	GRCGYC	1 cut(s)	284
AfaI	GTAC	2 cut(s)	167, 1153
AfiI	CCNNNNNNNGG	4 cut(s)	143, 554, 755, 1191
AgsI	TTSAA	9 cut(s)	358, 699, 796, 844, 907, 974, 994, 1015, 1108
AjnI	CCWGG	1 cut(s)	526
AjuI	GAANNNNNNNTTGG	2 cut(s)	1079, 1111
AluBI	AGCT	5 cut(s)	116, 601, 1004, 1011, 1061
AluI	AGCT	5 cut(s)	116, 601, 1004, 1011, 1061
Alw26I	GTCTC	6 cut(s)	42, 371, 482, 709, 726, 1130
AlwI	GGATC	2 cut(s)	326, 430
ApeKI	GCWGC	1 cut(s)	931
ApoI	RAATTY	1 cut(s)	663
Asp700I	GAANNNNTTC	1 cut(s)	989
AspLEI	GCGC	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	100
BanI	GGYRCC	1 cut(s)	283
BauI	CACGAG	1 cut(s)	723
BbsI	GAAGAC	1 cut(s)	445
BbvI	GCAGC	1 cut(s)	918
BccI	CCATC	5 cut(s)	22, 69, 188, 410, 548
BceAI	ACGGC	1 cut(s)	848
BciT130I	CCWGG	1 cut(s)	528
BciVI	GTATCC	1 cut(s)	506
BcoDI	GTCTC	6 cut(s)	42, 371, 482, 709, 726, 1130
BfaI	CTAG	4 cut(s)	306, 503, 551, 1001
BfmI	CTRYAG	1 cut(s)	87
BfoI	RGCGCY	1 cut(s)	287
BfuI	GTATCC	1 cut(s)	506
BisI	GCNGC	1 cut(s)	932
BlsI	GCNGC	1 cut(s)	933
Bme1390I	CCNGG	1 cut(s)	528
BmiI	GGNNCC	2 cut(s)	248, 285
BmrFI	CCNGG	1 cut(s)	528
BmrI	ACTGGG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	131
BpiI	GAAGAC	1 cut(s)	445
BplI	GAGNNNNNCTC	2 cut(s)	651, 683
BpmI	CTGGAG	3 cut(s)	366, 1045, 1112
Bpu10I	CCTNAGC	1 cut(s)	644
BsaHI	GRCGYC	1 cut(s)	284
BsaI	GGTCTC	2 cut(s)	482, 1130
BsaJI	CCNNGG	4 cut(s)	526, 527, 610, 849
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bsc4I	CCNNNNNNNGG	4 cut(s)	143, 554, 755, 1191
Bse1I	ACTGG	2 cut(s)	137, 232
Bse3DI	GCAATG	4 cut(s)	334, 395, 637, 759
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	4 cut(s)	526, 527, 610, 849
BseGI	GGATG	3 cut(s)	289, 544, 925
BseLI	CCNNNNNNNGG	4 cut(s)	143, 554, 755, 1191
BseMI	GCAATG	4 cut(s)	334, 395, 637, 759
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	2 cut(s)	137, 232
BseXI	GCAGC	1 cut(s)	918
BshNI	GGYRCC	1 cut(s)	283
BsiSI	CCGG	1 cut(s)	481
BslI	CCNNNNNNNGG	4 cut(s)	143, 554, 755, 1191
BsmAI	GTCTC	6 cut(s)	42, 371, 482, 709, 726, 1130
BsmI	GAATGC	1 cut(s)	588
Bso31I	GGTCTC	2 cut(s)	482, 1130
Bsp143I	GATC	8 cut(s)	217, 235, 313, 331, 422, 517, 682, 1028
BspACI	CCGC	2 cut(s)	894, 1149
BspCNI	CTCAG	1 cut(s)	110
BspHI	TCATGA	1 cut(s)	963
BspLI	GGNNCC	2 cut(s)	248, 285
BspMAI	CTGCAG	1 cut(s)	91
BspPI	GGATC	2 cut(s)	326, 430
BspT107I	GGYRCC	1 cut(s)	283
BspTNI	GGTCTC	2 cut(s)	482, 1130
BsrDI	GCAATG	4 cut(s)	334, 395, 637, 759
BsrI	ACTGG	2 cut(s)	137, 232
BssECI	CCNNGG	4 cut(s)	526, 527, 610, 849
BssMI	GATC	8 cut(s)	217, 235, 313, 331, 422, 517, 682, 1028
BssNI	GRCGYC	1 cut(s)	284
BssSI	CACGAG	1 cut(s)	723
BssT1I	CCWWGG	2 cut(s)	610, 849
Bst2BI	CACGAG	1 cut(s)	723
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	6 cut(s)	297, 339, 811, 821, 903, 1156
BstACI	GRCGYC	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	944
BstDEI	CTNAG	4 cut(s)	97, 644, 890, 1007
BstF5I	GGATG	3 cut(s)	289, 544, 925
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	8 cut(s)	220, 238, 316, 334, 425, 520, 685, 1031
BstMAI	GTCTC	6 cut(s)	42, 371, 482, 709, 726, 1130
BstMBI	GATC	8 cut(s)	217, 235, 313, 331, 422, 517, 682, 1028
BstMWI	GCNNNNNNNGC	1 cut(s)	860
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	526
BstSFI	CTRYAG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	918
BstV2I	GAAGAC	1 cut(s)	445
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BsuI	GTATCC	1 cut(s)	506
BtsCI	GGATG	3 cut(s)	289, 544, 925
BtsIMutI	CAGTG	3 cut(s)	293, 335, 826
Cac8I	GCNNGC	1 cut(s)	944
CciI	TCATGA	1 cut(s)	963
CfoI	GCGC	1 cut(s)	286
Csp6I	GTAC	2 cut(s)	166, 1152
CviAII	CATG	3 cut(s)	143, 708, 964
CviQI	GTAC	2 cut(s)	166, 1152
DdeI	CTNAG	4 cut(s)	97, 644, 890, 1007
DinI	GGCGCC	1 cut(s)	285
DpnI	GATC	8 cut(s)	219, 237, 315, 333, 424, 519, 684, 1030
DpnII	GATC	8 cut(s)	217, 235, 313, 331, 422, 517, 682, 1028
DrdI	GACNNNNNNGTC	1 cut(s)	718
DseDI	GACNNNNNNGTC	1 cut(s)	718
Eco130I	CCWWGG	2 cut(s)	610, 849
Eco31I	GGTCTC	2 cut(s)	482, 1130
Eco57I	CTGAAG	1 cut(s)	108
EcoRI	GAATTC	1 cut(s)	663
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	610, 849
EgeI	GGCGCC	1 cut(s)	285
EheI	GGCGCC	1 cut(s)	285
ErhI	CCWWGG	2 cut(s)	610, 849
FaeI	CATG	3 cut(s)	146, 711, 967
FatI	CATG	3 cut(s)	142, 707, 963
FblI	GTMKAC	1 cut(s)	955
Fnu4HI	GCNGC	1 cut(s)	932
FokI	GGATG	3 cut(s)	276, 531, 932
Fsp4HI	GCNGC	1 cut(s)	932
FspBI	CTAG	4 cut(s)	306, 503, 551, 1001
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	1 cut(s)	932
GsuI	CTGGAG	3 cut(s)	366, 1045, 1112
HaeII	RGCGCY	1 cut(s)	287
HapII	CCGG	1 cut(s)	481
HhaI	GCGC	1 cut(s)	286
Hin1I	GRCGYC	1 cut(s)	284
Hin1II	CATG	3 cut(s)	146, 711, 967
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HindIII	AAGCTT	1 cut(s)	1059
HinfI	GANTC	8 cut(s)	93, 105, 379, 538, 692, 702, 799, 1101
HpaII	CCGG	1 cut(s)	481
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	956
Hpy188I	TCNGA	3 cut(s)	74, 100, 369
Hpy8I	GTNNAC	1 cut(s)	956
Hpy99I	CGWCG	2 cut(s)	61, 683
HpyAV	CCTTC	1 cut(s)	1075
HpyCH4III	ACNGT	6 cut(s)	297, 339, 811, 821, 903, 1156
HpyCH4IV	ACGT	2 cut(s)	150, 952
HpyCH4V	TGCA	4 cut(s)	89, 327, 352, 752
HpyF10VI	GCNNNNNNNGC	1 cut(s)	860
HpyF3I	CTNAG	4 cut(s)	97, 644, 890, 1007
HpySE526I	ACGT	2 cut(s)	150, 952
Hsp92I	GRCGYC	1 cut(s)	284
Hsp92II	CATG	3 cut(s)	146, 711, 967
HspAI	GCGC	1 cut(s)	284
KasI	GGCGCC	1 cut(s)	283
Kzo9I	GATC	8 cut(s)	217, 235, 313, 331, 422, 517, 682, 1028
LmnI	GCTCC	2 cut(s)	252, 265
Lsp1109I	GCAGC	1 cut(s)	918
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	4 cut(s)	306, 503, 551, 1001
MaeII	ACGT	2 cut(s)	150, 952
MaeIII	GTNAC	4 cut(s)	175, 392, 594, 865
MalI	GATC	8 cut(s)	219, 237, 315, 333, 424, 519, 684, 1030
MboI	GATC	8 cut(s)	217, 235, 313, 331, 422, 517, 682, 1028
MboII	GAAGA	7 cut(s)	114, 417, 445, 687, 792, 808, 986
MflI	RGATCY	1 cut(s)	422
MluCI	AATT	3 cut(s)	663, 844, 1179
Mly113I	GGCGCC	1 cut(s)	284
MlyI	GAGTC	3 cut(s)	373, 547, 711
MroXI	GAANNNNTTC	1 cut(s)	989
MseI	TTAA	2 cut(s)	806, 1204
MslI	CAYNNNNRTG	1 cut(s)	1076
MspI	CCGG	1 cut(s)	481
MspR9I	CCNGG	1 cut(s)	528
Mva1269I	GAATGC	1 cut(s)	588
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	1 cut(s)	860
NarI	GGCGCC	1 cut(s)	284
NdeII	GATC	8 cut(s)	217, 235, 313, 331, 422, 517, 682, 1028
NlaIII	CATG	3 cut(s)	146, 711, 967
NlaIV	GGNNCC	2 cut(s)	248, 285
NmuCI	GTSAC	2 cut(s)	392, 594
PagI	TCATGA	1 cut(s)	963
PasI	CCCWGGG	1 cut(s)	527
PctI	GAATGC	1 cut(s)	588
PdmI	GAANNNNTTC	1 cut(s)	989
PfeI	GAWTC	5 cut(s)	93, 105, 692, 799, 1101
PflMI	CCANNNNNTGG	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	933
PleI	GAGTC	3 cut(s)	373, 546, 710
PluTI	GGCGCC	1 cut(s)	287
PpsI	GAGTC	3 cut(s)	373, 546, 710
Psp1406I	AACGTT	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	2 cut(s)	248, 285
PstI	CTGCAG	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	422
RsaI	GTAC	2 cut(s)	167, 1153
RsaNI	GTAC	2 cut(s)	166, 1152
RseI	CAYNNNNRTG	1 cut(s)	1076
SaqAI	TTAA	2 cut(s)	806, 1204
SatI	GCNGC	1 cut(s)	932
Sau3AI	GATC	8 cut(s)	217, 235, 313, 331, 422, 517, 682, 1028
SchI	GAGTC	3 cut(s)	373, 547, 711
ScrFI	CCNGG	1 cut(s)	528
SfaNI	GCATC	1 cut(s)	247
SfcI	CTRYAG	1 cut(s)	87
SfoI	GGCGCC	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	1076
Sse9I	AATT	3 cut(s)	663, 844, 1179
SsiI	CCGC	2 cut(s)	894, 1149
SspDI	GGCGCC	1 cut(s)	283
SspMI	CTAG	4 cut(s)	306, 503, 551, 1001
StyD4I	CCNGG	1 cut(s)	526
StyI	CCWWGG	2 cut(s)	610, 849
TaaI	ACNGT	6 cut(s)	297, 339, 811, 821, 903, 1156
TaiI	ACGT	2 cut(s)	153, 955
TaqI	TCGA	2 cut(s)	536, 1198
TaqII	GACCGA	1 cut(s)	623
TasI	AATT	3 cut(s)	663, 844, 1179
TfiI	GAWTC	5 cut(s)	93, 105, 692, 799, 1101
Tru1I	TTAA	2 cut(s)	806, 1204
Tru9I	TTAA	2 cut(s)	806, 1204
TscAI	CASTG	3 cut(s)	300, 342, 826
TseFI	GTSAC	2 cut(s)	392, 594
TseI	GCWGC	1 cut(s)	931
Tsp45I	GTSAC	2 cut(s)	392, 594
TspDTI	ATGAA	6 cut(s)	17, 131, 476, 593, 952, 1094
TspRI	CASTG	3 cut(s)	300, 342, 826
Van91I	CCANNNNNTGG	1 cut(s)	143
XapI	RAATTY	1 cut(s)	663
XbaI	TCTAGA	1 cut(s)	550
XmiI	GTMKAC	1 cut(s)	955
XmnI	GAANNNNTTC	1 cut(s)	989
XspI	CTAG	4 cut(s)	306, 503, 551, 1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.