Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009970

Physical Location & Seq

Genomic Coordinates Forward (+)

41044017 .. 41048712

Gene Structure 4696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG326000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGAGGGGAAGTGGTTGCTGATAATGTCGGTGTTGGTGATGGGTTGGTCTGTGACTCTGACATCGGCTTCTTTTGGTGATCGGTATCGGGGAAGGAAATCTTTTCTACCGACGGAAGCGACGTCGTCTTTGGCGTTCAGCCGTGCACCGTCGTCCATTGTGTTACCTGTTCATGGAAACGTGTACCCAATTGGGTCATATAATGTTACCTTAAACATTGGTCAGCCTCCAAAGCCCTACTTTCTCGACCCCGACACCGGTAGTGATCTTACATGGCTCCAGTGTGATGCTCCTTGTGTGAGATGTACTGAGGCGCCTCATCCATACTACCGGCCCAACAATGATCTGGTGCTCTGTAATGACCCTCTCTGTGTATCCTTGCACGCACCTGGTGCTCACAAATGTGACAATCCAGAGCAATGTGACTATGAAGTTGACTATGCAGACGGCGGCTCATCTCTTGGTGTACTTGTAAGGGATGCCTTTCACCTCAACTTTACAAATGGAATCCAGCAAATACCTCATCTGGCCCTTGGGTGTGGATATGATCAACTTCCTGGATCATCTTATCATCCCATAGATGGAGTTCTCGGCCTTGGCAAGGGAAAATCCAGCATCGTCTCACAACTTGCTAGTCAGGGTCTCATGCGAAATGTCGTTGGTCATTGTTTGAGTTCTCGAGGTGGAGGGTATTTCATCTTTGGGGATGACCTCTATGATTATTCACGAGCAGTTTGGACACCAATGTCACCTGATTACTCCAAACATTACTCACCTGGATTTGCGGAACTTATATTTGATGGGAAGTCTACTGGATTTAGAAACCTGTTCATGGTTTTTGACAGTGGGAGTTCTTACACTTACCTCAATTCTCAGGCTTATCATTTTTTGACTTCATGGTTGAAGAAGGAACTAAATGGAAAGCCTCTGAAAGAAGCTCCAGATGACAGGACTCTCCCACTCTGTTGGAAAGGCCGAAAGCCATTTAAGAACATACGTGATGCCAAGAAATACTTCAAGCCCTTAGCACTGAGATTTGCCATTGGAAGAAAGGATGCAGCACAGTTTGAATTGTCCCCTGAAGCTTATCTAATAATATCGGTGAGTTTCCCCTCCATTTTCTCCCTATTTATCTTCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

380

Amino Acids

42.13

Weight (kDa)

7.56

Isoelectric Point (pI)

34.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	66 - 298	4.8e-08	Eukaryotic aspartyl protease
TAXi_N	PF14543	67 - 236	1.1e-49	Xylanase inhibitor N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33490 AT4G33490
fragaria_vesca	FvH4_1g25160 FvH4_1g25160 FvH4_1g25160 FvH4_1g25160
malus_domestica	MD15G1136700.v1.1
prunus_persica	Prupe.4G279700_v2.0.a1 Prupe.4G279700_v2.0.a1 Prupe.4G279700_v2.0.a1
pyrus_communis	pycom15g12340 pycom15g12360
rosa_chinensis	RchiOBHm_Chr2g0122891
rosa_laevigata	RLG00000018722
rosa_roxburghii	Rroxscaffold_2G00121010
rosa_rugosa	Rorug02G0242800
rosa_samantha	Rh2AG301900 Rh2BG309500 Rh2CG288600 Rh2DG326000
rosa_wichuraiana	Rw2G023970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	745
AatII	GACGTC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	313
AccI	GTMKAC	1 cut(s)	809
AciI	CCGC	2 cut(s)	450, 785
AclWI	GGATC	1 cut(s)	568
AcuI	CTGAAG	1 cut(s)	1101
AcyI	GRCGYC	2 cut(s)	122, 314
AdeI	CACNNNGTG	1 cut(s)	392
AfaI	GTAC	3 cut(s)	185, 307, 468
AfiI	CCNNNNNNNGG	5 cut(s)	173, 257, 581, 601, 832
AflIII	ACRYGT	1 cut(s)	180
AgeI	ACCGGT	1 cut(s)	257
AgsI	TTSAA	3 cut(s)	904, 1018, 1070
AjnI	CCWGG	3 cut(s)	388, 556, 775
AjuI	GAANNNNNNNTTGG	2 cut(s)	998, 1030
AleI	CACNNNNGTG	1 cut(s)	402
AluBI	AGCT	2 cut(s)	938, 1085
AluI	AGCT	2 cut(s)	938, 1085
Alw21I	GWGCWC	3 cut(s)	148, 354, 397
Alw26I	GTCTC	2 cut(s)	625, 647
Alw44I	GTGCAC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	568
Ama87I	CYCGRG	1 cut(s)	678
AoxI	GGCC	4 cut(s)	332, 528, 592, 973
ApaLI	GTGCAC	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	1058
ArsI	GACNNNNNNTTYG	2 cut(s)	112, 144
AsiGI	ACCGGT	1 cut(s)	257
Asp700I	GAANNNNTTC	1 cut(s)	1013
AspLEI	GCGC	1 cut(s)	316
AspS9I	GGNCC	2 cut(s)	333, 529
AsuHPI	GGTGA	6 cut(s)	49, 89, 479, 741, 765, 1114
AvaI	CYCGRG	1 cut(s)	678
BaeGI	GKGCMC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	313
BauI	CACGAG	1 cut(s)	726
Bbv12I	GWGCWC	3 cut(s)	148, 354, 397
BbvI	GCAGC	1 cut(s)	1070
BccI	CCATC	3 cut(s)	34, 575, 794
BceAI	ACGGC	2 cut(s)	126, 463
BciT130I	CCWGG	3 cut(s)	390, 558, 777
BciVI	GTATCC	1 cut(s)	385
BclI	TGATCA	1 cut(s)	547
BcoDI	GTCTC	2 cut(s)	625, 647
BfaI	CTAG	1 cut(s)	633
BfoI	RGCGCY	1 cut(s)	317
BfuI	GTATCC	1 cut(s)	385
BisI	GCNGC	2 cut(s)	451, 1059
BlsI	GCNGC	2 cut(s)	452, 1060
Bme1390I	CCNGG	3 cut(s)	390, 558, 777
BmeT110I	CYCGRG	1 cut(s)	678
BmgT120I	GGNCC	2 cut(s)	333, 529
BmiI	GGNNCC	2 cut(s)	278, 315
BmrFI	CCNGG	3 cut(s)	390, 558, 777
BmsI	GCATC	5 cut(s)	277, 469, 624, 991, 1045
BpmI	CTGGAG	2 cut(s)	263, 924
Bpu10I	CCTNAGC	1 cut(s)	1024
BsaAI	YACGTR	1 cut(s)	998
BsaBI	GATNNNNATC	1 cut(s)	84
BsaHI	GRCGYC	2 cut(s)	122, 314
BsaI	GGTCTC	1 cut(s)	647
BsaJI	CCNNGG	2 cut(s)	532, 595
BsaWI	WCCGGW	1 cut(s)	257
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	5 cut(s)	173, 257, 581, 601, 832
Bse118I	RCCGGY	2 cut(s)	257, 330
Bse1I	ACTGG	2 cut(s)	280, 817
Bse3DI	GCAATG	1 cut(s)	425
Bse8I	GATNNNNATC	1 cut(s)	84
BseBI	CCWGG	3 cut(s)	390, 558, 777
BseDI	CCNNGG	2 cut(s)	532, 595
BseGI	GGATG	5 cut(s)	319, 484, 571, 712, 1060
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	5 cut(s)	173, 257, 581, 601, 832
BseMI	GCAATG	1 cut(s)	425
BseMII	CTCAG	3 cut(s)	300, 887, 1022
BseNI	ACTGG	2 cut(s)	280, 817
BseSI	GKGCMC	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	1070
BshFI	GGCC	4 cut(s)	334, 530, 594, 975
BshNI	GGYRCC	1 cut(s)	313
BshTI	ACCGGT	1 cut(s)	257
BsiHKAI	GWGCWC	3 cut(s)	148, 354, 397
BsiHKCI	CYCGRG	1 cut(s)	678
BsiSI	CCGG	2 cut(s)	258, 331
BslFI	GGGAC	1 cut(s)	1060
BslI	CCNNNNNNNGG	5 cut(s)	173, 257, 581, 601, 832
BsmAI	GTCTC	2 cut(s)	625, 647
BsmBI	CGTCTC	1 cut(s)	625
BsmFI	GGGAC	1 cut(s)	1060
BsnI	GGCC	4 cut(s)	334, 530, 594, 975
Bso31I	GGTCTC	1 cut(s)	647
BsoBI	CYCGRG	1 cut(s)	678
Bsp1286I	GDGCHC	3 cut(s)	148, 354, 397
Bsp143I	GATC	5 cut(s)	79, 265, 343, 547, 560
BspACI	CCGC	2 cut(s)	450, 785
BspANI	GGCC	4 cut(s)	334, 530, 594, 975
BspCNI	CTCAG	3 cut(s)	301, 886, 1023
BspLI	GGNNCC	2 cut(s)	278, 315
BspPI	GGATC	1 cut(s)	568
BspT107I	GGYRCC	1 cut(s)	313
BspTNI	GGTCTC	1 cut(s)	647
BsrDI	GCAATG	1 cut(s)	425
BsrFI	RCCGGY	2 cut(s)	257, 330
BsrI	ACTGG	2 cut(s)	280, 817
BssAI	RCCGGY	2 cut(s)	257, 330
BssECI	CCNNGG	2 cut(s)	532, 595
BssMI	GATC	5 cut(s)	79, 265, 343, 547, 560
BssNI	GRCGYC	2 cut(s)	122, 314
BssSI	CACGAG	1 cut(s)	726
BssT1I	CCWWGG	2 cut(s)	532, 595
Bst2BI	CACGAG	1 cut(s)	726
Bst2UI	CCWGG	3 cut(s)	390, 558, 777
Bst4CI	ACNGT	3 cut(s)	150, 845, 1065
BstACI	GRCGYC	2 cut(s)	122, 314
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstBAI	YACGTR	1 cut(s)	998
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	4 cut(s)	309, 873, 1024, 1031
BstENI	CCTNNNNNAGG	1 cut(s)	599
BstF5I	GGATG	5 cut(s)	319, 484, 571, 712, 1060
BstH2I	RGCGCY	1 cut(s)	317
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	5 cut(s)	82, 268, 346, 550, 563
BstMAI	GTCTC	2 cut(s)	625, 647
BstMBI	GATC	5 cut(s)	79, 265, 343, 547, 560
BstMWI	GCNNNNNNNGC	2 cut(s)	232, 392
BstNI	CCWGG	3 cut(s)	390, 558, 777
BstSCI	CCNGG	3 cut(s)	388, 556, 775
BstSLI	GKGCMC	1 cut(s)	148
BstV1I	GCAGC	1 cut(s)	1070
BstXI	CCANNNNNNTGG	1 cut(s)	966
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	4 cut(s)	334, 530, 594, 975
BtsCI	GGATG	5 cut(s)	319, 484, 571, 712, 1060
BtsIMutI	CAGTG	3 cut(s)	287, 850, 1028
Cac8I	GCNNGC	1 cut(s)	384
CfoI	GCGC	1 cut(s)	316
Cfr10I	RCCGGY	2 cut(s)	257, 330
Cfr13I	GGNCC	2 cut(s)	333, 529
CsiI	ACCWGGT	1 cut(s)	388
Csp6I	GTAC	3 cut(s)	184, 306, 467
CspAI	ACCGGT	1 cut(s)	257
CviAII	CATG	5 cut(s)	173, 273, 646, 832, 897
CviQI	GTAC	3 cut(s)	184, 306, 467
DdeI	CTNAG	4 cut(s)	309, 873, 1024, 1031
DinI	GGCGCC	1 cut(s)	315
DpnI	GATC	5 cut(s)	81, 267, 345, 549, 562
DpnII	GATC	5 cut(s)	79, 265, 343, 547, 560
DraIII	CACNNNGTG	1 cut(s)	392
DrdI	GACNNNNNNGTC	1 cut(s)	745
DseDI	GACNNNNNNGTC	1 cut(s)	745
Eco130I	CCWWGG	2 cut(s)	532, 595
Eco31I	GGTCTC	1 cut(s)	647
Eco57I	CTGAAG	1 cut(s)	1101
Eco88I	CYCGRG	1 cut(s)	678
EcoNI	CCTNNNNNAGG	1 cut(s)	599
EcoRII	CCWGG	3 cut(s)	388, 556, 775
EcoT14I	CCWWGG	2 cut(s)	532, 595
EgeI	GGCGCC	1 cut(s)	315
EheI	GGCGCC	1 cut(s)	315
ErhI	CCWWGG	2 cut(s)	532, 595
Esp3I	CGTCTC	1 cut(s)	625
FaeI	CATG	5 cut(s)	176, 276, 649, 835, 900
FalI	AAGNNNNNCTT	6 cut(s)	85, 117, 224, 256, 998, 1030
FaqI	GGGAC	1 cut(s)	1060
FatI	CATG	5 cut(s)	172, 272, 645, 831, 896
FbaI	TGATCA	1 cut(s)	547
FblI	GTMKAC	1 cut(s)	809
Fnu4HI	GCNGC	2 cut(s)	451, 1059
FokI	GGATG	5 cut(s)	306, 491, 558, 719, 1067
Fsp4HI	GCNGC	2 cut(s)	451, 1059
FspBI	CTAG	1 cut(s)	633
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	2 cut(s)	451, 1059
GsuI	CTGGAG	2 cut(s)	263, 924
HaeII	RGCGCY	1 cut(s)	317
HaeIII	GGCC	4 cut(s)	334, 530, 594, 975
HapII	CCGG	2 cut(s)	258, 331
HhaI	GCGC	1 cut(s)	316
Hin1I	GRCGYC	2 cut(s)	122, 314
Hin1II	CATG	5 cut(s)	176, 276, 649, 835, 900
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HindIII	AAGCTT	1 cut(s)	1083
HinfI	GANTC	3 cut(s)	55, 507, 952
HpaII	CCGG	2 cut(s)	258, 331
HphI	GGTGA	6 cut(s)	49, 89, 479, 741, 765, 1114
Hpy166II	GTNNAC	5 cut(s)	146, 184, 436, 467, 810
Hpy188I	TCNGA	2 cut(s)	60, 930
Hpy188III	TCNNGA	5 cut(s)	245, 413, 678, 726, 941
Hpy8I	GTNNAC	5 cut(s)	146, 184, 436, 467, 810
Hpy99I	CGWCG	4 cut(s)	115, 124, 127, 154
HpyAV	CCTTC	2 cut(s)	87, 901
HpyCH4III	ACNGT	3 cut(s)	150, 845, 1065
HpyCH4IV	ACGT	3 cut(s)	122, 180, 997
HpyCH4V	TGCA	4 cut(s)	146, 382, 443, 1058
HpyF10VI	GCNNNNNNNGC	2 cut(s)	232, 392
HpyF3I	CTNAG	4 cut(s)	309, 873, 1024, 1031
HpySE526I	ACGT	3 cut(s)	122, 180, 997
Hsp92I	GRCGYC	2 cut(s)	122, 314
Hsp92II	CATG	5 cut(s)	176, 276, 649, 835, 900
HspAI	GCGC	1 cut(s)	314
KasI	GGCGCC	1 cut(s)	313
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	5 cut(s)	79, 265, 343, 547, 560
LmnI	GCTCC	3 cut(s)	282, 295, 943
Lsp1109I	GCAGC	1 cut(s)	1070
LweI	GCATC	5 cut(s)	277, 469, 624, 991, 1045
MabI	ACCWGGT	1 cut(s)	388
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	3 cut(s)	122, 180, 997
MaeIII	GTNAC	6 cut(s)	52, 162, 205, 404, 422, 747
MalI	GATC	5 cut(s)	81, 267, 345, 549, 562
MboI	GATC	5 cut(s)	79, 265, 343, 547, 560
MboII	GAAGA	3 cut(s)	916, 1059, 1126
MfeI	CAATTG	1 cut(s)	189
MhlI	GDGCHC	3 cut(s)	148, 354, 397
MluCI	AATT	3 cut(s)	189, 868, 1070
Mly113I	GGCGCC	1 cut(s)	314
MlyI	GAGTC	2 cut(s)	49, 946
MmeI	TCCRAC	1 cut(s)	947
MroXI	GAANNNNTTC	1 cut(s)	1013
MseI	TTAA	2 cut(s)	212, 987
MslI	CAYNNNNRTG	1 cut(s)	402
MspI	CCGG	2 cut(s)	258, 331
MspR9I	CCNGG	3 cut(s)	390, 558, 777
MunI	CAATTG	1 cut(s)	189
MvaI	CCWGG	3 cut(s)	390, 558, 777
MwoI	GCNNNNNNNGC	2 cut(s)	232, 392
NarI	GGCGCC	1 cut(s)	314
NdeII	GATC	5 cut(s)	79, 265, 343, 547, 560
NlaIII	CATG	5 cut(s)	176, 276, 649, 835, 900
NlaIV	GGNNCC	2 cut(s)	278, 315
NmeAIII	GCCGAG	1 cut(s)	570
NmuCI	GTSAC	4 cut(s)	52, 404, 422, 747
OliI	CACNNNNGTG	1 cut(s)	402
PaeR7I	CTCGAG	1 cut(s)	678
PcsI	WCGNNNNNNNCGW	2 cut(s)	119, 131
PdmI	GAANNNNTTC	1 cut(s)	1013
PfeI	GAWTC	1 cut(s)	507
PflFI	GACNNNGTC	1 cut(s)	124
PfoI	TCCNGGA	1 cut(s)	556
PinAI	ACCGGT	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	452, 1060
PleI	GAGTC	2 cut(s)	49, 946
PluTI	GGCGCC	1 cut(s)	317
PpsI	GAGTC	2 cut(s)	49, 946
Ppu21I	YACGTR	1 cut(s)	998
Psp6I	CCWGG	3 cut(s)	388, 556, 775
PspGI	CCWGG	3 cut(s)	388, 556, 775
PspN4I	GGNNCC	2 cut(s)	278, 315
PspPI	GGNCC	2 cut(s)	333, 529
PsyI	GACNNNGTC	1 cut(s)	124
RsaI	GTAC	3 cut(s)	185, 307, 468
RsaNI	GTAC	3 cut(s)	184, 306, 467
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	2 cut(s)	212, 987
SatI	GCNGC	2 cut(s)	451, 1059
Sau3AI	GATC	5 cut(s)	79, 265, 343, 547, 560
Sau96I	GGNCC	2 cut(s)	333, 529
SchI	GAGTC	2 cut(s)	49, 946
ScrFI	CCNGG	3 cut(s)	390, 558, 777
SduI	GDGCHC	3 cut(s)	148, 354, 397
SexAI	ACCWGGT	1 cut(s)	388
SfaNI	GCATC	5 cut(s)	277, 469, 624, 991, 1045
SfoI	GGCGCC	1 cut(s)	315
Sfr274I	CTCGAG	1 cut(s)	678
SlaI	CTCGAG	1 cut(s)	678
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	678
SmoI	CTYRAG	1 cut(s)	678
Sse9I	AATT	3 cut(s)	189, 868, 1070
SsiI	CCGC	2 cut(s)	450, 785
SspDI	GGCGCC	1 cut(s)	313
SspMI	CTAG	1 cut(s)	633
StyD4I	CCNGG	3 cut(s)	388, 556, 775
StyI	CCWWGG	2 cut(s)	532, 595
TaaI	ACNGT	3 cut(s)	150, 845, 1065
TaiI	ACGT	3 cut(s)	125, 183, 1000
TaqI	TCGA	2 cut(s)	246, 679
TasI	AATT	3 cut(s)	189, 868, 1070
TatI	WGTACW	2 cut(s)	305, 466
TauI	GCSGC	1 cut(s)	453
TfiI	GAWTC	1 cut(s)	507
Tru1I	TTAA	2 cut(s)	212, 987
Tru9I	TTAA	2 cut(s)	212, 987
TscAI	CASTG	3 cut(s)	287, 850, 1035
TseFI	GTSAC	4 cut(s)	52, 404, 422, 747
TseI	GCWGC	1 cut(s)	1058
Tsp45I	GTSAC	4 cut(s)	52, 404, 422, 747
TspDTI	ATGAA	5 cut(s)	161, 444, 685, 820, 885
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	3 cut(s)	287, 850, 1035
Tth111I	GACNNNGTC	1 cut(s)	124
VneI	GTGCAC	1 cut(s)	144
XagI	CCTNNNNNAGG	1 cut(s)	599
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XhoI	CTCGAG	1 cut(s)	678
XmiI	GTMKAC	1 cut(s)	809
XmnI	GAANNNNTTC	1 cut(s)	1013
XspI	CTAG	1 cut(s)	633
ZraI	GACGTC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.