Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009970

Physical Location & Seq

Genomic Coordinates Forward (+)

8452293 .. 8454749

Gene Structure 2457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g12360.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGAGGGCAAGTCTGGGTCGTGGTTGCTGTTGACGATGGTGGTGATGGGTTGGTGTGTAACTTCGTCATCAGCTTCTTTCGGCGACCAGTACTATCGGGGCTCTAGGAAAACTGATGCGACGTCGTCTTTGGGGTTCAGTCGCGCAGCACCCTCCTTCATAGTATTTCCAGTTCATGGCAACGTTTATCCAACAGGGTCCTATAATGTGACCCTAAACATTGGACAGCCTCCAAAGCCCTACTTTCTGGATCCAGACACTGGTAGTGATCTCACATGGCTCCAATGTGATGCTCCTTGTGTCAGTTGCACTCCGGCTCCTCATCCATATTACCGTCCAAGCAATGACCTAGTGGCCTATAAGGACCCCCTCTGTGAAGCCCTGCACTCGCCGGGTTCTCACAAATACGATGATCCGGAGCAATGTGACTACGAGGTTGAGTATGCTGATGATAGTGCATCCCGTGGTGTGCTTGTGAGGGATTCCTTTTCCCTCAACTTTGCAAATGGACTCCAGCTACGACCTAAACTGGCCCTCGGGTGTGGATATGATCAACTTCCTGGACCATCTTATCATCCCATTGATGGAGTGCTCGGCCTTGGCAGGGGAAAAACCAGCATCATATCACAACTTAGTAGTCAGGGTTTGGTGCGAAATGTCATTGGTCACTGTTTAAGTGGCCGAGGTGGGGGGTATTTTGTTTTTGGGGATGACATCTATGATTATTCACGCATAGTTTGGACACCAATGTCACTTGATTACTCAAAACACTACTCGCCTGGCCCTGCGGAACTCATGGTTGACGGGAAATCTACCGGGTTTGGAAACCTACACATGGTTTTTGACAGTGGGAGTTCCTACACTTATCTCAGCTCTCAGGTTTATCAATTTTTGACTTCATGGTTGAAAAGAGAACTAACTAGAAAGCCTTTAAAAGAAGCTCCAGATGACGGAACTCTCCCGCTCTGTTGGAAAGGTCGCAAGCCATTTAAAAGCATACGAGATGTTAAGAAATACTTCAAGCCCTCAGCACTAAGGTTCGGCAGTGGTAGAAAAGACACAGCTCAGTATGAATTGCCCCCTGAAGCATACCTAATAGTATCGTCCAAGGGAAATGTTTGCTTGGGAATTCTAAATGGTACTGAAGCTGGAGTGCAAGATAATACCATTGGAGACATTTCAATGCAAGATAAGATGGTGATTTATGACAATGAGAAGCAGATGATTGGATGGGCTCCTGGAAACTGTGATCATCTACCCAAGCCTAGAAGTAGTTTCAGCTTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

430

Amino Acids

47.31

Weight (kDa)

6.5

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33490 AT4G33490
fragaria_vesca	FvH4_1g25160 FvH4_1g25160 FvH4_1g25160 FvH4_1g25160
malus_domestica	MD15G1136700.v1.1
prunus_persica	Prupe.4G279700_v2.0.a1 Prupe.4G279700_v2.0.a1 Prupe.4G279700_v2.0.a1
pyrus_communis	pycom15g12340 pycom15g12360
rosa_chinensis	RchiOBHm_Chr2g0122891
rosa_laevigata	RLG00000018722
rosa_roxburghii	Rroxscaffold_2G00121010
rosa_rugosa	Rorug02G0242800
rosa_samantha	Rh2AG301900 Rh2BG309500 Rh2CG288600 Rh2DG326000
rosa_wichuraiana	Rw2G023970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	748
AatII	GACGTC	1 cut(s)	125
AccB7I	CCANNNNNTGG	2 cut(s)	176, 260
AccBSI	CCGCTC	1 cut(s)	964
AccII	CGCG	1 cut(s)	144
AccIII	TCCGGA	1 cut(s)	415
AciI	CCGC	2 cut(s)	788, 962
AclI	AACGTT	1 cut(s)	183
AclWI	GGATC	3 cut(s)	245, 258, 407
AcoI	YGGCCR	1 cut(s)	679
AcsI	RAATTY	1 cut(s)	1128
AcuI	CTGAAG	2 cut(s)	1104, 1164
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	2 cut(s)	92, 1141
AfiI	CCNNNNNNNGG	7 cut(s)	176, 260, 584, 604, 688, 835, 950
AgsI	TTSAA	3 cut(s)	907, 1021, 1182
AjnI	CCWGG	3 cut(s)	559, 778, 1237
AluBI	AGCT	7 cut(s)	74, 517, 873, 941, 1064, 1148, 1281
AluI	AGCT	7 cut(s)	74, 517, 873, 941, 1064, 1148, 1281
Alw21I	GWGCWC	1 cut(s)	594
Alw26I	GTCTC	1 cut(s)	1167
AlwI	GGATC	3 cut(s)	245, 258, 407
AlwNI	CAGNNNCTG	2 cut(s)	260, 1284
Ama87I	CYCGRG	1 cut(s)	536
Aor13HI	TCCGGA	1 cut(s)	415
AoxI	GGCC	5 cut(s)	354, 531, 595, 679, 781
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	1128
ArsI	GACNNNNNNTTYG	2 cut(s)	112, 144
Asp700I	GAANNNNTTC	1 cut(s)	1016
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	5 cut(s)	198, 364, 532, 563, 782
AsuC2I	CCSGG	2 cut(s)	393, 817
AsuHPI	GGTGA	2 cut(s)	55, 1210
AvaI	CYCGRG	1 cut(s)	536
AvaII	GGWCC	3 cut(s)	198, 364, 563
BamHI	GGATCC	1 cut(s)	250
BanII	GRGCYC	2 cut(s)	104, 1237
Bbv12I	GWGCWC	1 cut(s)	594
BbvCI	CCTCAGC	1 cut(s)	1027
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	6 cut(s)	31, 40, 574, 578, 1189, 1224
BciT130I	CCWGG	3 cut(s)	561, 780, 1239
BclI	TGATCA	2 cut(s)	550, 1249
BcnI	CCSGG	2 cut(s)	393, 817
BcoDI	GTCTC	1 cut(s)	1167
BfaI	CTAG	4 cut(s)	105, 350, 921, 1266
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	5 cut(s)	393, 561, 780, 817, 1239
Bme18I	GGWCC	3 cut(s)	198, 364, 563
BmeT110I	CYCGRG	1 cut(s)	536
BmgT120I	GGNCC	5 cut(s)	198, 364, 532, 563, 782
BmiI	GGNNCC	6 cut(s)	199, 252, 281, 318, 366, 1236
BmrFI	CCNGG	5 cut(s)	393, 561, 780, 817, 1239
BmsI	GCATC	4 cut(s)	106, 280, 467, 627
BpmI	CTGGAG	3 cut(s)	497, 927, 1170
Bpu10I	CCTNAGC	1 cut(s)	1027
BpuMI	CCSGG	2 cut(s)	393, 817
BsaHI	GRCGYC	1 cut(s)	122
BsaJI	CCNNGG	5 cut(s)	463, 535, 598, 682, 1107
BsaWI	WCCGGW	1 cut(s)	415
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 301, 331
Bsc4I	CCNNNNNNNGG	7 cut(s)	176, 260, 584, 604, 688, 835, 950
Bse1I	ACTGG	4 cut(s)	88, 170, 265, 534
Bse3DI	GCAATG	2 cut(s)	349, 428
BseAI	TCCGGA	1 cut(s)	415
BseBI	CCWGG	3 cut(s)	561, 780, 1239
BseDI	CCNNGG	5 cut(s)	463, 535, 598, 682, 1107
BseGI	GGATG	5 cut(s)	322, 458, 574, 715, 1235
BseLI	CCNNNNNNNGG	7 cut(s)	176, 260, 584, 604, 688, 835, 950
BseMI	GCAATG	2 cut(s)	349, 428
BseMII	CTCAG	4 cut(s)	883, 890, 1041, 1079
BseNI	ACTGG	4 cut(s)	88, 170, 265, 534
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	158
BsgI	GTGCAG	1 cut(s)	368
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	5 cut(s)	356, 533, 597, 681, 783
BsiHKAI	GWGCWC	1 cut(s)	594
BsiHKCI	CYCGRG	1 cut(s)	536
BsiSI	CCGG	4 cut(s)	314, 392, 416, 816
BslI	CCNNNNNNNGG	7 cut(s)	176, 260, 584, 604, 688, 835, 950
BsmAI	GTCTC	1 cut(s)	1167
BsnI	GGCC	5 cut(s)	356, 533, 597, 681, 783
BsoBI	CYCGRG	1 cut(s)	536
Bsp1286I	GDGCHC	3 cut(s)	104, 594, 1237
Bsp13I	TCCGGA	1 cut(s)	415
Bsp143I	GATC	5 cut(s)	250, 268, 412, 550, 1249
BspACI	CCGC	2 cut(s)	788, 962
BspANI	GGCC	5 cut(s)	356, 533, 597, 681, 783
BspCNI	CTCAG	4 cut(s)	882, 889, 1040, 1078
BspEI	TCCGGA	1 cut(s)	415
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	6 cut(s)	199, 252, 281, 318, 366, 1236
BspPI	GGATC	3 cut(s)	245, 258, 407
BsrBI	CCGCTC	1 cut(s)	964
BsrDI	GCAATG	2 cut(s)	349, 428
BsrI	ACTGG	4 cut(s)	88, 170, 265, 534
BssECI	CCNNGG	5 cut(s)	463, 535, 598, 682, 1107
BssMI	GATC	5 cut(s)	250, 268, 412, 550, 1249
BssNI	GRCGYC	1 cut(s)	122
BssT1I	CCWWGG	2 cut(s)	598, 1107
Bst2UI	CCWGG	3 cut(s)	561, 780, 1239
Bst4CI	ACNGT	4 cut(s)	335, 671, 848, 1247
BstACI	GRCGYC	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	983
BstDEI	CTNAG	6 cut(s)	632, 869, 876, 1027, 1034, 1065
BstDSI	CCRYGG	1 cut(s)	463
BstF5I	GGATG	5 cut(s)	322, 458, 574, 715, 1235
BstFNI	CGCG	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	5 cut(s)	253, 271, 415, 553, 1252
BstMAI	GTCTC	1 cut(s)	1167
BstMBI	GATC	5 cut(s)	250, 268, 412, 550, 1249
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstNI	CCWGG	3 cut(s)	561, 780, 1239
BstSCI	CCNGG	5 cut(s)	391, 559, 778, 815, 1237
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BsuRI	GGCC	5 cut(s)	356, 533, 597, 681, 783
BtgI	CCRYGG	1 cut(s)	463
BtsCI	GGATG	5 cut(s)	322, 458, 574, 715, 1235
BtsI	GCAGTG	1 cut(s)	1051
BtsIMutI	CAGTG	4 cut(s)	258, 667, 853, 1051
Cac8I	GCNNGC	1 cut(s)	983
CaiI	CAGNNNCTG	2 cut(s)	260, 1284
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	5 cut(s)	198, 364, 532, 563, 782
Csp6I	GTAC	2 cut(s)	91, 1140
CviAII	CATG	5 cut(s)	176, 276, 796, 835, 900
CviQI	GTAC	2 cut(s)	91, 1140
DdeI	CTNAG	6 cut(s)	632, 869, 876, 1027, 1034, 1065
DpnI	GATC	5 cut(s)	252, 270, 414, 552, 1251
DpnII	GATC	5 cut(s)	250, 268, 412, 550, 1249
DraI	TTTAAA	2 cut(s)	933, 991
DrdI	GACNNNNNNGTC	1 cut(s)	748
DseDI	GACNNNNNNGTC	1 cut(s)	748
EaeI	YGGCCR	1 cut(s)	679
Eco130I	CCWWGG	2 cut(s)	598, 1107
Eco24I	GRGCYC	2 cut(s)	104, 1237
Eco47I	GGWCC	3 cut(s)	198, 364, 563
Eco57I	CTGAAG	2 cut(s)	1104, 1164
Eco88I	CYCGRG	1 cut(s)	536
EcoO109I	RGGNCCY	2 cut(s)	198, 364
EcoRI	GAATTC	1 cut(s)	1128
EcoRII	CCWGG	3 cut(s)	559, 778, 1237
EcoT14I	CCWWGG	2 cut(s)	598, 1107
EcoT38I	GRGCYC	2 cut(s)	104, 1237
ErhI	CCWWGG	2 cut(s)	598, 1107
FaeI	CATG	5 cut(s)	179, 279, 799, 838, 903
FalI	AAGNNNNNCTT	4 cut(s)	227, 259, 1001, 1033
FatI	CATG	5 cut(s)	175, 275, 795, 834, 899
FauI	CCCGC	1 cut(s)	969
FbaI	TGATCA	2 cut(s)	550, 1249
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	5 cut(s)	309, 445, 561, 722, 1242
FriOI	GRGCYC	2 cut(s)	104, 1237
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	4 cut(s)	105, 350, 921, 1266
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	1 cut(s)	147
GsuI	CTGGAG	3 cut(s)	497, 927, 1170
HaeIII	GGCC	5 cut(s)	356, 533, 597, 681, 783
HapII	CCGG	4 cut(s)	314, 392, 416, 816
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	5 cut(s)	179, 279, 799, 838, 903
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	2 cut(s)	33, 802
HindII	GTYRAC	2 cut(s)	33, 802
HinfI	GANTC	2 cut(s)	482, 510
HpaII	CCGG	4 cut(s)	314, 392, 416, 816
HphI	GGTGA	2 cut(s)	55, 1210
Hpy166II	GTNNAC	2 cut(s)	33, 802
Hpy188III	TCNNGA	4 cut(s)	248, 254, 416, 944
Hpy8I	GTNNAC	2 cut(s)	33, 802
Hpy99I	CGWCG	2 cut(s)	124, 127
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	4 cut(s)	335, 671, 848, 1247
HpyCH4IV	ACGT	2 cut(s)	122, 183
HpyCH4V	TGCA	6 cut(s)	309, 385, 458, 503, 1156, 1186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
HpyF3I	CTNAG	6 cut(s)	632, 869, 876, 1027, 1034, 1065
HpySE526I	ACGT	2 cut(s)	122, 183
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	5 cut(s)	179, 279, 799, 838, 903
HspAI	GCGC	1 cut(s)	144
Kpn2I	TCCGGA	1 cut(s)	415
Ksp22I	TGATCA	2 cut(s)	550, 1249
Kzo9I	GATC	5 cut(s)	250, 268, 412, 550, 1249
LmnI	GCTCC	6 cut(s)	285, 298, 322, 418, 946, 1240
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	4 cut(s)	106, 280, 467, 627
MaeI	CTAG	4 cut(s)	105, 350, 921, 1266
MaeII	ACGT	2 cut(s)	122, 183
MaeIII	GTNAC	5 cut(s)	58, 208, 425, 665, 750
MalI	GATC	5 cut(s)	252, 270, 414, 552, 1251
MbiI	CCGCTC	1 cut(s)	964
MboI	GATC	5 cut(s)	250, 268, 412, 550, 1249
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	3 cut(s)	104, 594, 1237
MluCI	AATT	3 cut(s)	887, 1073, 1128
MlyI	GAGTC	1 cut(s)	504
MmeI	TCCRAC	2 cut(s)	215, 950
MroI	TCCGGA	1 cut(s)	415
MroXI	GAANNNNTTC	1 cut(s)	1016
MseI	TTAA	4 cut(s)	674, 932, 990, 1008
MslI	CAYNNNNRTG	1 cut(s)	1181
MspI	CCGG	4 cut(s)	314, 392, 416, 816
MspR9I	CCNGG	5 cut(s)	393, 561, 780, 817, 1239
MvaI	CCWGG	3 cut(s)	561, 780, 1239
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	235
NciI	CCSGG	2 cut(s)	393, 817
NdeII	GATC	5 cut(s)	250, 268, 412, 550, 1249
NlaIII	CATG	5 cut(s)	179, 279, 799, 838, 903
NlaIV	GGNNCC	6 cut(s)	199, 252, 281, 318, 366, 1236
NmeAIII	GCCGAG	2 cut(s)	573, 707
NmuCI	GTSAC	4 cut(s)	208, 425, 665, 750
PdmI	GAANNNNTTC	1 cut(s)	1016
PfeI	GAWTC	1 cut(s)	482
PflFI	GACNNNGTC	1 cut(s)	124
PflMI	CCANNNNNTGG	2 cut(s)	176, 260
PfoI	TCCNGGA	2 cut(s)	559, 1237
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	504
PpsI	GAGTC	1 cut(s)	504
PpuMI	RGGWCCY	2 cut(s)	198, 364
Psp1406I	AACGTT	1 cut(s)	183
Psp5II	RGGWCCY	2 cut(s)	198, 364
Psp6I	CCWGG	3 cut(s)	559, 778, 1237
PspGI	CCWGG	3 cut(s)	559, 778, 1237
PspN4I	GGNNCC	6 cut(s)	199, 252, 281, 318, 366, 1236
PspPI	GGNCC	5 cut(s)	198, 364, 532, 563, 782
PspPPI	RGGWCCY	2 cut(s)	198, 364
PsrI	GAACNNNNNNTAC	2 cut(s)	156, 188
PstNI	CAGNNNCTG	2 cut(s)	260, 1284
PsuI	RGATCY	1 cut(s)	250
PsyI	GACNNNGTC	1 cut(s)	124
RsaI	GTAC	2 cut(s)	92, 1141
RsaNI	GTAC	2 cut(s)	91, 1140
RseI	CAYNNNNRTG	1 cut(s)	1181
SaqAI	TTAA	4 cut(s)	674, 932, 990, 1008
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	5 cut(s)	250, 268, 412, 550, 1249
Sau96I	GGNCC	5 cut(s)	198, 364, 532, 563, 782
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	1 cut(s)	504
ScrFI	CCNGG	5 cut(s)	393, 561, 780, 817, 1239
SduI	GDGCHC	3 cut(s)	104, 594, 1237
SfaNI	GCATC	4 cut(s)	106, 280, 467, 627
SinI	GGWCC	3 cut(s)	198, 364, 563
SmiMI	CAYNNNNRTG	1 cut(s)	1181
Sse9I	AATT	3 cut(s)	887, 1073, 1128
SsiI	CCGC	2 cut(s)	788, 962
SspMI	CTAG	4 cut(s)	105, 350, 921, 1266
StyD4I	CCNGG	5 cut(s)	391, 559, 778, 815, 1237
StyI	CCWWGG	2 cut(s)	598, 1107
TaaI	ACNGT	4 cut(s)	335, 671, 848, 1247
TaiI	ACGT	2 cut(s)	125, 186
TasI	AATT	3 cut(s)	887, 1073, 1128
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	482
Tru1I	TTAA	4 cut(s)	674, 932, 990, 1008
Tru9I	TTAA	4 cut(s)	674, 932, 990, 1008
TscAI	CASTG	4 cut(s)	265, 674, 853, 1051
TseFI	GTSAC	4 cut(s)	208, 425, 665, 750
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	4 cut(s)	208, 425, 665, 750
TspDTI	ATGAA	4 cut(s)	148, 164, 888, 1086
TspGWI	ACGGA	1 cut(s)	966
TspRI	CASTG	4 cut(s)	265, 674, 853, 1051
Tth111I	GACNNNGTC	1 cut(s)	124
Van91I	CCANNNNNTGG	2 cut(s)	176, 260
VpaK11BI	GGWCC	3 cut(s)	198, 364, 563
XapI	RAATTY	1 cut(s)	1128
XmnI	GAANNNNTTC	1 cut(s)	1016
XspI	CTAG	4 cut(s)	105, 350, 921, 1266
ZraI	GACGTC	1 cut(s)	123
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.