Prupe.4G279700_v2.0.a1

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
23608619 .. 23612757
4139 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G279700.1

Sequence Viewer

Length: 1308 bp
ATGAAAACGGAGGGAAAGTCTGGGTGGTTGTTGCTGTTGATGTCGCTGTTAGTGATGGGTTTGTCTGCAACTATGTCATCAGCTTCTTTTGGTGATCAGTACCATCGGGGTAGAAGGAAAACTATGCTACCGGATGAAGCGACGTCGTCTTTGGGGCTCAACCGCGCAGCCTCCTCCATTGTCTTACCGGTTCATGGAAACGTGTACCCTATTGGGTCTTATAATGTCACTCTTAACATTGGTCAGCCTCCAAAGCCCTACTTTCTTGATCCAGACACTGGTAGTGATCTCACATGGCTCCAATGTGATGCTCCCTGTGTCAGATGCACTGAGGCTCCTCATCCATTTTACCGTCCCAACAATGATCTAGTGGTCTGTAAGGACCCCCTCTGTGAGGCCTTGCATGCACCGGGTTCCCACAAATGTGATAATCCAGAGCAATGTGATTATGAGGTTGAGTATGCAGATGGTGGCTCATCCCTTGGTGTACTTGTAAGGGATGCCTTTCTCCTCAACTTTACCAATGGAAACCAGCGAACAACTCACCTGGCCCTTGGGTGTGGATACGATCAACTACCTGGTTCATCTTATCATCCAATAGACGGAGTCCTTGGCCTTGGCAAGGGAAAATCTAGCATCGTATCACAACTTAGTAATCAGGGTCTGGTGCGACATGTCATTGGTCACTGTTTAAGTGGCCGAGGGGGCGGGTTTTTCTTCTTGGGGGATGGCCTTTATGATTCTTCACGCATAGTTTGGACACCAATGTCACCTGATTACGCCAAACATTACTCCCCAGGACTTGCGGAACTTATAGTCGGTGGGAAATCTACTGGGTTTAGAAACCTTGTTATGGTTTTTGACAGTGGAAGCTCATACACTTATCTTAATTCTCAGGCTTATCAATTTTTGACTTCATGGTTGAAAAGAGAACTAACTGGAAAACCTTTAAAAGAAGCTCTAGATGACAGGACTCTCCCACTTTGTTGGAAAGGTCGAAAGCCATTTAGAAACATACGTGATGTCAAGACATACTTCAAGCCCTTAGCACTAAGATTCGCCAGTGGAAGAAAAGATACCACGCAGTTTGAATTGCCCCCAGAAGCTTATCTAATTATATCGTCCAAGGGAAATGTTTGCTTGGGAATTTTAAATGGTAGTGAAGTTGGGCTGCAAAATTCTAACATTATTGGAGACATTTCAATGCAAGATAAAATGGTGATTTATGACAATGAGAAGCAGATGATTGGATGGGGTCCTGGAAACTGTGATAAGCTACCCAAGTCTAGAAGTTTCAGCTTTTGGTGA

Protein Analysis

436

Amino Acids

47.79

Weight (kDa)

8.17

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 222
AasI GACNNNNNNGTC 1 cut(s) 766
AatII GACGTC 1 cut(s) 146
AccB7I CCANNNNNTGG 1 cut(s) 278
AccII CGCG 1 cut(s) 165
AciI CCGC 3 cut(s) 163, 708, 806
AclWI GGATC 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 697
AcsI RAATTY 2 cut(s) 1146, 1177
AcyI GRCGYC 1 cut(s) 143
AfaI GTAC 3 cut(s) 101, 206, 489
AfiI CCNNNNNNNGG 6 cut(s) 194, 278, 394, 602, 622, 853
AflIII ACRYGT 2 cut(s) 201, 673
AgeI ACCGGT 1 cut(s) 187
AgsI TTSAA 4 cut(s) 925, 1039, 1091, 1203
AjnI CCWGG 4 cut(s) 546, 577, 796, 1258
AleI CACNNNNGTG 1 cut(s) 423
AluBI AGCT 6 cut(s) 83, 873, 959, 1106, 1276, 1299
AluI AGCT 6 cut(s) 83, 873, 959, 1106, 1276, 1299
Alw26I GTCTC 1 cut(s) 1188
AlwI GGATC 1 cut(s) 263
AlwNI CAGNNNCTG 2 cut(s) 278, 664
AoxI GGCC 5 cut(s) 396, 549, 613, 697, 730
ApeKI GCWGC 2 cut(s) 167, 1171
ApoI RAATTY 2 cut(s) 1146, 1177
ArsI GACNNNNNNTTYG 2 cut(s) 133, 165
AsiGI ACCGGT 1 cut(s) 187
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 3 cut(s) 382, 550, 1256
AsuC2I CCSGG 1 cut(s) 411
AsuHPI GGTGA 4 cut(s) 104, 536, 762, 1231
AvaII GGWCC 2 cut(s) 382, 1256
BanII GRGCYC 1 cut(s) 159
BarI GAAGNNNNNNTAC 2 cut(s) 1060, 1092
BbvI GCAGC 2 cut(s) 179, 1158
BccI CCATC 5 cut(s) 49, 111, 461, 722, 1245
BciT130I CCWGG 4 cut(s) 548, 579, 798, 1260
BciVI GTATCC 1 cut(s) 557
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 1 cut(s) 411
BcoDI GTCTC 1 cut(s) 1188
BfaI CTAG 4 cut(s) 368, 633, 962, 1287
BfuI GTATCC 1 cut(s) 557
BglI GCCNNNNNGGC 1 cut(s) 705
BisI GCNGC 2 cut(s) 168, 1172
BlsI GCNGC 2 cut(s) 169, 1173
Bme1390I CCNGG 5 cut(s) 411, 548, 579, 798, 1260
Bme18I GGWCC 2 cut(s) 382, 1256
BmgT120I GGNCC 3 cut(s) 382, 550, 1256
BmiI GGNNCC 5 cut(s) 299, 336, 384, 415, 1257
BmrFI CCNGG 5 cut(s) 411, 548, 579, 798, 1260
BmrI ACTGGG 1 cut(s) 843
BmsI GCATC 4 cut(s) 298, 314, 490, 645
BmuI ACTGGG 1 cut(s) 843
Bpu10I CCTNAGC 1 cut(s) 1045
BpuMI CCSGG 1 cut(s) 411
BsaAI YACGTR 1 cut(s) 1019
BsaHI GRCGYC 1 cut(s) 143
BsaJI CCNNGG 7 cut(s) 481, 553, 610, 616, 700, 796, 1125
BsaWI WCCGGW 2 cut(s) 130, 187
BsaXI ACNNNNNCTCC 3 cut(s) 32, 319, 349
Bsc4I CCNNNNNNNGG 6 cut(s) 194, 278, 394, 602, 622, 853
Bse118I RCCGGY 1 cut(s) 187
Bse1I ACTGG 4 cut(s) 283, 838, 943, 1062
Bse3DI GCAATG 1 cut(s) 446
BseBI CCWGG 4 cut(s) 548, 579, 798, 1260
BseDI CCNNGG 7 cut(s) 481, 553, 610, 616, 700, 796, 1125
BseGI GGATG 7 cut(s) 139, 340, 476, 505, 592, 733, 1256
BseLI CCNNNNNNNGG 6 cut(s) 194, 278, 394, 602, 622, 853
BseMI GCAATG 1 cut(s) 446
BseMII CTCAG 2 cut(s) 321, 908
BseNI ACTGG 4 cut(s) 283, 838, 943, 1062
BseRI GAGGAG 3 cut(s) 163, 327, 500
BseXI GCAGC 2 cut(s) 179, 1158
Bsh1236I CGCG 1 cut(s) 165
BshFI GGCC 5 cut(s) 398, 551, 615, 699, 732
BshTI ACCGGT 1 cut(s) 187
BsiSI CCGG 3 cut(s) 131, 188, 410
BslFI GGGAC 1 cut(s) 339
BslI CCNNNNNNNGG 6 cut(s) 194, 278, 394, 602, 622, 853
BsmAI GTCTC 1 cut(s) 1188
BsmFI GGGAC 1 cut(s) 339
BsnI GGCC 5 cut(s) 398, 551, 615, 699, 732
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 5 cut(s) 94, 268, 286, 364, 568
BspACI CCGC 3 cut(s) 163, 708, 806
BspANI GGCC 5 cut(s) 398, 551, 615, 699, 732
BspCNI CTCAG 2 cut(s) 322, 907
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 5 cut(s) 299, 336, 384, 415, 1257
BspPI GGATC 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 446
BsrFI RCCGGY 1 cut(s) 187
BsrI ACTGG 4 cut(s) 283, 838, 943, 1062
BssAI RCCGGY 1 cut(s) 187
BssECI CCNNGG 7 cut(s) 481, 553, 610, 616, 700, 796, 1125
BssMI GATC 5 cut(s) 94, 268, 286, 364, 568
BssNI GRCGYC 1 cut(s) 143
BssT1I CCWWGG 5 cut(s) 481, 553, 610, 616, 1125
Bst2UI CCWGG 4 cut(s) 548, 579, 798, 1260
Bst4CI ACNGT 4 cut(s) 353, 689, 866, 1268
BstACI GRCGYC 1 cut(s) 143
BstBAI YACGTR 1 cut(s) 1019
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 5 cut(s) 330, 650, 894, 1045, 1052
BstENI CCTNNNNNAGG 2 cut(s) 392, 620
BstF5I GGATG 7 cut(s) 139, 340, 476, 505, 592, 733, 1256
BstFNI CGCG 1 cut(s) 165
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 5 cut(s) 97, 271, 289, 367, 571
BstMAI GTCTC 1 cut(s) 1188
BstMBI GATC 5 cut(s) 94, 268, 286, 364, 568
BstMWI GCNNNNNNNGC 3 cut(s) 253, 404, 705
BstNI CCWGG 4 cut(s) 548, 579, 798, 1260
BstNSI RCATGY 2 cut(s) 407, 677
BstSCI CCNGG 5 cut(s) 409, 546, 577, 796, 1258
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 2 cut(s) 179, 1158
BstXI CCANNNNNNTGG 1 cut(s) 987
BsuI GTATCC 1 cut(s) 557
BsuRI GGCC 5 cut(s) 398, 551, 615, 699, 732
BtsCI GGATG 7 cut(s) 139, 340, 476, 505, 592, 733, 1256
BtsIMutI CAGTG 5 cut(s) 276, 327, 685, 871, 1069
Cac8I GCNNGC 1 cut(s) 405
CaiI CAGNNNCTG 2 cut(s) 278, 664
CfoI GCGC 1 cut(s) 167
Cfr10I RCCGGY 1 cut(s) 187
Cfr13I GGNCC 3 cut(s) 382, 550, 1256
CsiI ACCWGGT 1 cut(s) 577
Csp6I GTAC 3 cut(s) 100, 205, 488
CspAI ACCGGT 1 cut(s) 187
CspCI CAANNNNNGTGG 2 cut(s) 1069, 1104
CviAII CATG 5 cut(s) 194, 294, 404, 674, 918
CviQI GTAC 3 cut(s) 100, 205, 488
DdeI CTNAG 5 cut(s) 330, 650, 894, 1045, 1052
DpnI GATC 5 cut(s) 96, 270, 288, 366, 570
DpnII GATC 5 cut(s) 94, 268, 286, 364, 568
DraI TTTAAA 2 cut(s) 951, 1152
DrdI GACNNNNNNGTC 1 cut(s) 766
DseDI GACNNNNNNGTC 1 cut(s) 766
EaeI YGGCCR 1 cut(s) 697
Eco130I CCWWGG 5 cut(s) 481, 553, 610, 616, 1125
Eco147I AGGCCT 1 cut(s) 398
Eco24I GRGCYC 1 cut(s) 159
Eco47I GGWCC 2 cut(s) 382, 1256
EcoNI CCTNNNNNAGG 2 cut(s) 392, 620
EcoO109I RGGNCCY 2 cut(s) 382, 1256
EcoRII CCWGG 4 cut(s) 546, 577, 796, 1258
EcoT14I CCWWGG 5 cut(s) 481, 553, 610, 616, 1125
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 5 cut(s) 481, 553, 610, 616, 1125
FaeI CATG 5 cut(s) 197, 297, 407, 677, 921
FalI AAGNNNNNCTT 4 cut(s) 245, 277, 1019, 1051
FaqI GGGAC 1 cut(s) 339
FatI CATG 5 cut(s) 193, 293, 403, 673, 917
FauI CCCGC 1 cut(s) 701
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 2 cut(s) 168, 1172
FokI GGATG 7 cut(s) 146, 327, 463, 512, 579, 740, 1263
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 2 cut(s) 168, 1172
FspBI CTAG 4 cut(s) 368, 633, 962, 1287
GlaI GCGC 1 cut(s) 166
GluI GCNGC 2 cut(s) 168, 1172
HaeIII GGCC 5 cut(s) 398, 551, 615, 699, 732
HapII CCGG 3 cut(s) 131, 188, 410
HhaI GCGC 1 cut(s) 167
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 5 cut(s) 197, 297, 407, 677, 921
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HindIII AAGCTT 1 cut(s) 1104
HinfI GANTC 4 cut(s) 606, 740, 973, 1056
HpaII CCGG 3 cut(s) 131, 188, 410
HphI GGTGA 4 cut(s) 104, 536, 762, 1231
Hpy166II GTNNAC 2 cut(s) 205, 488
Hpy188I TCNGA 1 cut(s) 323
Hpy188III TCNNGA 6 cut(s) 266, 272, 434, 962, 1027, 1287
Hpy8I GTNNAC 2 cut(s) 205, 488
Hpy99I CGWCG 2 cut(s) 145, 148
HpyAV CCTTC 1 cut(s) 108
HpyCH4III ACNGT 4 cut(s) 353, 689, 866, 1268
HpyCH4IV ACGT 3 cut(s) 143, 201, 1018
HpyCH4V TGCA 7 cut(s) 68, 327, 403, 407, 464, 1174, 1207
HpyF10VI GCNNNNNNNGC 3 cut(s) 253, 404, 705
HpyF3I CTNAG 5 cut(s) 330, 650, 894, 1045, 1052
HpySE526I ACGT 3 cut(s) 143, 201, 1018
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 5 cut(s) 197, 297, 407, 677, 921
HspAI GCGC 1 cut(s) 165
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 5 cut(s) 94, 268, 286, 364, 568
LmnI GCTCC 3 cut(s) 303, 316, 340
Lsp1109I GCAGC 2 cut(s) 179, 1158
LweI GCATC 4 cut(s) 298, 314, 490, 645
MabI ACCWGGT 1 cut(s) 577
MaeI CTAG 4 cut(s) 368, 633, 962, 1287
MaeII ACGT 3 cut(s) 143, 201, 1018
MaeIII GTNAC 3 cut(s) 226, 683, 768
MalI GATC 5 cut(s) 96, 270, 288, 366, 570
MboI GATC 5 cut(s) 94, 268, 286, 364, 568
MboII GAAGA 3 cut(s) 709, 735, 1080
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 6 cut(s) 889, 905, 1091, 1113, 1146, 1177
MlyI GAGTC 2 cut(s) 615, 967
MmeI TCCRAC 1 cut(s) 968
MseI TTAA 5 cut(s) 234, 692, 888, 950, 1151
MslI CAYNNNNRTG 2 cut(s) 423, 1202
MspI CCGG 3 cut(s) 131, 188, 410
MspR9I CCNGG 5 cut(s) 411, 548, 579, 798, 1260
MvaI CCWGG 4 cut(s) 548, 579, 798, 1260
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 3 cut(s) 253, 404, 705
NciI CCSGG 1 cut(s) 411
NdeII GATC 5 cut(s) 94, 268, 286, 364, 568
NlaIII CATG 5 cut(s) 197, 297, 407, 677, 921
NlaIV GGNNCC 5 cut(s) 299, 336, 384, 415, 1257
NmeAIII GCCGAG 1 cut(s) 725
NmuCI GTSAC 3 cut(s) 226, 683, 768
NspI RCATGY 2 cut(s) 407, 677
OliI CACNNNNGTG 1 cut(s) 423
PaeI GCATGC 1 cut(s) 407
PceI AGGCCT 1 cut(s) 398
PciI ACATGT 1 cut(s) 673
PfeI GAWTC 2 cut(s) 740, 1056
PflFI GACNNNGTC 2 cut(s) 145, 605
PflMI CCANNNNNTGG 1 cut(s) 278
PfoI TCCNGGA 1 cut(s) 1258
PinAI ACCGGT 1 cut(s) 187
PkrI GCNGC 2 cut(s) 169, 1173
PleI GAGTC 2 cut(s) 614, 967
PpsI GAGTC 2 cut(s) 614, 967
Ppu21I YACGTR 1 cut(s) 1019
PpuMI RGGWCCY 2 cut(s) 382, 1256
PscI ACATGT 1 cut(s) 673
PsiI TTATAA 1 cut(s) 222
Psp5II RGGWCCY 2 cut(s) 382, 1256
Psp6I CCWGG 4 cut(s) 546, 577, 796, 1258
PspGI CCWGG 4 cut(s) 546, 577, 796, 1258
PspN4I GGNNCC 5 cut(s) 299, 336, 384, 415, 1257
PspPI GGNCC 3 cut(s) 382, 550, 1256
PspPPI RGGWCCY 2 cut(s) 382, 1256
PstNI CAGNNNCTG 2 cut(s) 278, 664
PsyI GACNNNGTC 2 cut(s) 145, 605
RsaI GTAC 3 cut(s) 101, 206, 489
RsaNI GTAC 3 cut(s) 100, 205, 488
RseI CAYNNNNRTG 2 cut(s) 423, 1202
SaqAI TTAA 5 cut(s) 234, 692, 888, 950, 1151
SatI GCNGC 2 cut(s) 168, 1172
Sau3AI GATC 5 cut(s) 94, 268, 286, 364, 568
Sau96I GGNCC 3 cut(s) 382, 550, 1256
SchI GAGTC 2 cut(s) 615, 967
ScrFI CCNGG 5 cut(s) 411, 548, 579, 798, 1260
SduI GDGCHC 1 cut(s) 159
SexAI ACCWGGT 1 cut(s) 577
SfaNI GCATC 4 cut(s) 298, 314, 490, 645
SinI GGWCC 2 cut(s) 382, 1256
SmiMI CAYNNNNRTG 2 cut(s) 423, 1202
SphI GCATGC 1 cut(s) 407
Sse9I AATT 6 cut(s) 889, 905, 1091, 1113, 1146, 1177
SseBI AGGCCT 1 cut(s) 398
SsiI CCGC 3 cut(s) 163, 708, 806
SspMI CTAG 4 cut(s) 368, 633, 962, 1287
StuI AGGCCT 1 cut(s) 398
StyD4I CCNGG 5 cut(s) 409, 546, 577, 796, 1258
StyI CCWWGG 5 cut(s) 481, 553, 610, 616, 1125
TaaI ACNGT 4 cut(s) 353, 689, 866, 1268
TaiI ACGT 3 cut(s) 146, 204, 1021
TaqI TCGA 1 cut(s) 997
TasI AATT 6 cut(s) 889, 905, 1091, 1113, 1146, 1177
TatI WGTACW 1 cut(s) 487
TfiI GAWTC 2 cut(s) 740, 1056
Tru1I TTAA 5 cut(s) 234, 692, 888, 950, 1151
Tru9I TTAA 5 cut(s) 234, 692, 888, 950, 1151
TscAI CASTG 5 cut(s) 283, 334, 692, 871, 1069
TseFI GTSAC 3 cut(s) 226, 683, 768
TseI GCWGC 2 cut(s) 167, 1171
Tsp45I GTSAC 3 cut(s) 226, 683, 768
TspDTI ATGAA 5 cut(s) 17, 150, 182, 573, 906
TspGWI ACGGA 2 cut(s) 23, 618
TspRI CASTG 5 cut(s) 283, 334, 692, 871, 1069
Tth111I GACNNNGTC 2 cut(s) 145, 605
Van91I CCANNNNNTGG 1 cut(s) 278
VpaK11BI GGWCC 2 cut(s) 382, 1256
XagI CCTNNNNNAGG 2 cut(s) 392, 620
XapI RAATTY 2 cut(s) 1146, 1177
XbaI TCTAGA 2 cut(s) 961, 1286
XceI RCATGY 2 cut(s) 407, 677
XspI CTAG 4 cut(s) 368, 633, 962, 1287
ZraI GACGTC 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.