FvH4_1g25160

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
16955311 .. 16959930
4620 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25160.t4

Sequence Viewer

Length: 1203 bp
ATGGCCGGGAAGTGGTTGCTGTTGATGTTGGTGTTGGTGATGGGTTGGTCTGTAACTCTGACGTCAGCTTCTTTTGGTGATCGGTATCGGGGAAGGAAAGCTTTTCTACCGGCGGAAGCGACGTCGTCTTTGGCGATCAGCCGTGCACCGTCGTCTGTTGTGTTACCTGTTCATGGAAACGTGTACCCAATTGGGTCATATAATGTTACCTTAAACATTGGTCAGCCTCCAAAGCCCTACTTTCTCGACCCCGACACCGGTAGTGATCTTACATGGCTCCAATGTGATGCTCCTTGTGTTAGATGTACTGAGGCGCCTCATCCATACTACCGGCCTAACAATGACCTGGTGGTCTGTAGGGACCCTCTCTGTGCATCCTTGCACGCACCTGGTGCTCACAAATGCGACAATCCAGAGCAATGCGACTATGAAGTTGAGTATGCAGATGGGGGTTCATCCCTCGGTGTACTTGTAAGGGATGCCTTTCACCTCAACTTTACAAATGGGATCCAGCAAGCACCTCATCTGGCCCTTGGGTGTGGATATGATCAACTTCCTGGATCATCTTATCATCCTATAGATGGAGTTCTCGGCCTTGGCAAGGGAAAATCTAGCATCGTGTCACAACTTGCTAGTCAGGGTCTTGTGCGAAATGTTGTTGGTCATTGTTTAAGTTCTCGAGGTGGAGGATTTTTCATCTTTGGGGATGACCTCTATGATTATTCACGCGCAGTTTGGACACCAATGTCACCAGATTACTCAAAACATTATTCACCTGGATCTGCGGAACTGATCTTTGATGGGAAGACTACTGGAATGAGAAACCTACACTTGGTTTTTGACAGTGGGAGTTCTTACACTTATCTCAATTCTCAGGCTTATCATTTTTTGACTTTATGGTTGAAGAGGGAGCTAAATGGAAAGCCTCTAAAAGAAACTTCAGATGACAGAACTCTCCCGCTCTGTTGGAAGGGTCGAAAACCATTTAAGAACATACGTGAAGTCAAGAAATACTTCAAGCCCATAGCACTGAGATTTGCCATTGGAAGAAAGGATGCAGCTCAGTTTGAATTGTCCCCTGAAGCTTATCTAATAATATCCTCCAAGGGAAATGTTTGCTTGGGAATTTTAGATGGCACTGAAGTTGGCTTACAAAATTCAAACATCATTGGAGATGATTGGTTGGACTCCTGGAAACTGTGA

Protein Analysis

401

Amino Acids

44.0

Weight (kDa)

7.13

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 66 - 294 1.4e-08 Eukaryotic aspartyl protease
TAXi_N PF14543 67 - 236 9.7e-50 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 350, 745
AatII GACGTC 2 cut(s) 65, 125
AccB1I GGYRCC 1 cut(s) 313
AccBSI CCGCTC 1 cut(s) 961
AccII CGCG 1 cut(s) 729
AciI CCGC 3 cut(s) 113, 785, 959
AclWI GGATC 4 cut(s) 502, 515, 568, 787
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 1125, 1156
AcuI CTGAAG 3 cut(s) 924, 1101, 1161
AcyI GRCGYC 3 cut(s) 62, 122, 314
AdeI CACNNNGTG 1 cut(s) 392
AfaI GTAC 3 cut(s) 185, 307, 468
AfiI CCNNNNNNNGG 6 cut(s) 12, 173, 257, 581, 601, 832
AflIII ACRYGT 1 cut(s) 180
AgeI ACCGGT 1 cut(s) 257
AgsI TTSAA 4 cut(s) 904, 1018, 1070, 1161
AjnI CCWGG 5 cut(s) 345, 388, 556, 775, 1190
AluBI AGCT 5 cut(s) 68, 101, 913, 1061, 1085
AluI AGCT 5 cut(s) 68, 101, 913, 1061, 1085
Alw21I GWGCWC 2 cut(s) 148, 397
Alw44I GTGCAC 1 cut(s) 144
AlwI GGATC 4 cut(s) 502, 515, 568, 787
Ama87I CYCGRG 1 cut(s) 678
AoxI GGCC 4 cut(s) 3, 332, 528, 592
ApaLI GTGCAC 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 1058
ApoI RAATTY 2 cut(s) 1125, 1156
ArsI GACNNNNNNTTYG 2 cut(s) 112, 144
AsiGI ACCGGT 1 cut(s) 257
Asp700I GAANNNNTTC 1 cut(s) 1013
AspLEI GCGC 2 cut(s) 316, 731
AspS9I GGNCC 2 cut(s) 361, 529
AsuC2I CCSGG 1 cut(s) 7
AsuHPI GGTGA 5 cut(s) 49, 89, 479, 741, 765
AvaI CYCGRG 1 cut(s) 678
AvaII GGWCC 1 cut(s) 361
BaeGI GKGCMC 1 cut(s) 148
BamHI GGATCC 1 cut(s) 507
BanI GGYRCC 1 cut(s) 313
BarI GAAGNNNNNNTAC 2 cut(s) 1134, 1166
BbsI GAAGAC 1 cut(s) 812
Bbv12I GWGCWC 2 cut(s) 148, 397
BbvI GCAGC 1 cut(s) 1070
BccI CCATC 5 cut(s) 34, 440, 575, 794, 1127
BceAI ACGGC 1 cut(s) 126
BciT130I CCWGG 5 cut(s) 347, 390, 558, 777, 1192
BclI TGATCA 1 cut(s) 547
BcnI CCSGG 1 cut(s) 7
BfaI CTAG 2 cut(s) 612, 633
BfmI CTRYAG 2 cut(s) 355, 576
BfoI RGCGCY 1 cut(s) 317
BisI GCNGC 1 cut(s) 1059
BlsI GCNGC 1 cut(s) 1060
Bme1390I CCNGG 6 cut(s) 7, 347, 390, 558, 777, 1192
Bme18I GGWCC 1 cut(s) 361
BmeT110I CYCGRG 1 cut(s) 678
BmgT120I GGNCC 2 cut(s) 361, 529
BmiI GGNNCC 5 cut(s) 278, 315, 362, 363, 509
BmrFI CCNGG 6 cut(s) 7, 347, 390, 558, 777, 1192
BmsI GCATC 5 cut(s) 277, 383, 469, 624, 1045
BpiI GAAGAC 1 cut(s) 812
BpuMI CCSGG 1 cut(s) 7
BsaAI YACGTR 1 cut(s) 998
BsaBI GATNNNNATC 1 cut(s) 84
BsaHI GRCGYC 3 cut(s) 62, 122, 314
BsaJI CCNNGG 4 cut(s) 460, 532, 595, 1104
BsaWI WCCGGW 1 cut(s) 257
Bsc4I CCNNNNNNNGG 6 cut(s) 12, 173, 257, 581, 601, 832
Bse118I RCCGGY 3 cut(s) 109, 257, 330
Bse1I ACTGG 1 cut(s) 817
Bse3DI GCAATG 1 cut(s) 425
Bse8I GATNNNNATC 1 cut(s) 84
BseBI CCWGG 5 cut(s) 347, 390, 558, 777, 1192
BseDI CCNNGG 4 cut(s) 460, 532, 595, 1104
BseGI GGATG 7 cut(s) 319, 374, 455, 484, 571, 712, 1060
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 6 cut(s) 12, 173, 257, 581, 601, 832
BseMI GCAATG 1 cut(s) 425
BseMII CTCAG 4 cut(s) 300, 887, 1022, 1076
BseNI ACTGG 1 cut(s) 817
BseSI GKGCMC 1 cut(s) 148
BseXI GCAGC 1 cut(s) 1070
Bsh1236I CGCG 1 cut(s) 729
BshFI GGCC 4 cut(s) 5, 334, 530, 594
BshNI GGYRCC 1 cut(s) 313
BshTI ACCGGT 1 cut(s) 257
BsiHKAI GWGCWC 2 cut(s) 148, 397
BsiHKCI CYCGRG 1 cut(s) 678
BsiSI CCGG 4 cut(s) 6, 110, 258, 331
BslFI GGGAC 2 cut(s) 374, 1060
BslI CCNNNNNNNGG 6 cut(s) 12, 173, 257, 581, 601, 832
BsmFI GGGAC 2 cut(s) 374, 1060
BsnI GGCC 4 cut(s) 5, 334, 530, 594
BsoBI CYCGRG 1 cut(s) 678
Bsp1286I GDGCHC 2 cut(s) 148, 397
Bsp143I GATC 8 cut(s) 79, 135, 265, 507, 547, 560, 779, 792
BspACI CCGC 3 cut(s) 113, 785, 959
BspANI GGCC 4 cut(s) 5, 334, 530, 594
BspCNI CTCAG 4 cut(s) 301, 886, 1023, 1075
BspFNI CGCG 1 cut(s) 729
BspLI GGNNCC 5 cut(s) 278, 315, 362, 363, 509
BspPI GGATC 4 cut(s) 502, 515, 568, 787
BspT107I GGYRCC 1 cut(s) 313
BsrBI CCGCTC 1 cut(s) 961
BsrDI GCAATG 1 cut(s) 425
BsrFI RCCGGY 3 cut(s) 109, 257, 330
BsrI ACTGG 1 cut(s) 817
BssAI RCCGGY 3 cut(s) 109, 257, 330
BssECI CCNNGG 4 cut(s) 460, 532, 595, 1104
BssMI GATC 8 cut(s) 79, 135, 265, 507, 547, 560, 779, 792
BssNI GRCGYC 3 cut(s) 62, 122, 314
BssT1I CCWWGG 3 cut(s) 532, 595, 1104
Bst2UI CCWGG 5 cut(s) 347, 390, 558, 777, 1192
Bst4CI ACNGT 3 cut(s) 150, 845, 1200
Bst6I CTCTTC 1 cut(s) 899
BstACI GRCGYC 3 cut(s) 62, 122, 314
BstAPI GCANNNNNTGC 1 cut(s) 392
BstBAI YACGTR 1 cut(s) 998
BstC8I GCNNGC 2 cut(s) 384, 516
BstDEI CTNAG 4 cut(s) 309, 873, 1031, 1062
BstENI CCTNNNNNAGG 1 cut(s) 599
BstF5I GGATG 7 cut(s) 319, 374, 455, 484, 571, 712, 1060
BstFNI CGCG 1 cut(s) 729
BstH2I RGCGCY 1 cut(s) 317
BstHHI GCGC 2 cut(s) 316, 731
BstKTI GATC 8 cut(s) 82, 138, 268, 510, 550, 563, 782, 795
BstMBI GATC 8 cut(s) 79, 135, 265, 507, 547, 560, 779, 792
BstMWI GCNNNNNNNGC 2 cut(s) 232, 392
BstNI CCWGG 5 cut(s) 347, 390, 558, 777, 1192
BstSCI CCNGG 6 cut(s) 5, 345, 388, 556, 775, 1190
BstSFI CTRYAG 2 cut(s) 355, 576
BstSLI GKGCMC 1 cut(s) 148
BstUI CGCG 1 cut(s) 729
BstV1I GCAGC 1 cut(s) 1070
BstV2I GAAGAC 1 cut(s) 812
BstX2I RGATCY 2 cut(s) 507, 779
BstYI RGATCY 2 cut(s) 507, 779
BsuRI GGCC 4 cut(s) 5, 334, 530, 594
BtsCI GGATG 7 cut(s) 319, 374, 455, 484, 571, 712, 1060
BtsIMutI CAGTG 3 cut(s) 850, 1028, 1137
Cac8I GCNNGC 2 cut(s) 384, 516
CfoI GCGC 2 cut(s) 316, 731
Cfr10I RCCGGY 3 cut(s) 109, 257, 330
Cfr13I GGNCC 2 cut(s) 361, 529
CsiI ACCWGGT 2 cut(s) 345, 388
Csp6I GTAC 3 cut(s) 184, 306, 467
CspAI ACCGGT 1 cut(s) 257
CviAII CATG 2 cut(s) 173, 273
CviQI GTAC 3 cut(s) 184, 306, 467
DdeI CTNAG 4 cut(s) 309, 873, 1031, 1062
DinI GGCGCC 1 cut(s) 315
DpnI GATC 8 cut(s) 81, 137, 267, 509, 549, 562, 781, 794
DpnII GATC 8 cut(s) 79, 135, 265, 507, 547, 560, 779, 792
DraIII CACNNNGTG 1 cut(s) 392
DrdI GACNNNNNNGTC 2 cut(s) 350, 745
DseDI GACNNNNNNGTC 2 cut(s) 350, 745
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 899
EarI CTCTTC 1 cut(s) 899
EciI GGCGGA 1 cut(s) 128
Eco130I CCWWGG 3 cut(s) 532, 595, 1104
Eco47I GGWCC 1 cut(s) 361
Eco57I CTGAAG 3 cut(s) 924, 1101, 1161
Eco88I CYCGRG 1 cut(s) 678
EcoNI CCTNNNNNAGG 1 cut(s) 599
EcoO109I RGGNCCY 1 cut(s) 361
EcoRII CCWGG 5 cut(s) 345, 388, 556, 775, 1190
EcoT14I CCWWGG 3 cut(s) 532, 595, 1104
EgeI GGCGCC 1 cut(s) 315
EheI GGCGCC 1 cut(s) 315
ErhI CCWWGG 3 cut(s) 532, 595, 1104
FaeI CATG 2 cut(s) 176, 276
FalI AAGNNNNNCTT 6 cut(s) 85, 117, 224, 256, 998, 1030
FaqI GGGAC 2 cut(s) 374, 1060
FatI CATG 2 cut(s) 172, 272
FauI CCCGC 1 cut(s) 966
FbaI TGATCA 1 cut(s) 547
Fnu4HI GCNGC 1 cut(s) 1059
FokI GGATG 7 cut(s) 306, 361, 442, 491, 558, 719, 1067
Fsp4HI GCNGC 1 cut(s) 1059
FspBI CTAG 2 cut(s) 612, 633
GlaI GCGC 2 cut(s) 315, 730
GluI GCNGC 1 cut(s) 1059
HaeII RGCGCY 1 cut(s) 317
HaeIII GGCC 4 cut(s) 5, 334, 530, 594
HapII CCGG 4 cut(s) 6, 110, 258, 331
HhaI GCGC 2 cut(s) 316, 731
Hin1I GRCGYC 3 cut(s) 62, 122, 314
Hin1II CATG 2 cut(s) 176, 276
Hin6I GCGC 2 cut(s) 314, 729
HinP1I GCGC 2 cut(s) 314, 729
HindIII AAGCTT 2 cut(s) 99, 1083
HinfI GANTC 1 cut(s) 1187
HpaII CCGG 4 cut(s) 6, 110, 258, 331
HphI GGTGA 5 cut(s) 49, 89, 479, 741, 765
Hpy166II GTNNAC 3 cut(s) 146, 184, 467
Hpy188I TCNGA 2 cut(s) 60, 943
Hpy188III TCNNGA 4 cut(s) 245, 413, 678, 1006
Hpy8I GTNNAC 3 cut(s) 146, 184, 467
Hpy99I CGWCG 3 cut(s) 124, 127, 154
HpyAV CCTTC 2 cut(s) 87, 964
HpyCH4III ACNGT 3 cut(s) 150, 845, 1200
HpyCH4IV ACGT 4 cut(s) 62, 122, 180, 997
HpyCH4V TGCA 5 cut(s) 146, 374, 382, 443, 1058
HpyF10VI GCNNNNNNNGC 2 cut(s) 232, 392
HpyF3I CTNAG 4 cut(s) 309, 873, 1031, 1062
HpySE526I ACGT 4 cut(s) 62, 122, 180, 997
Hsp92I GRCGYC 3 cut(s) 62, 122, 314
Hsp92II CATG 2 cut(s) 176, 276
HspAI GCGC 2 cut(s) 314, 729
KasI GGCGCC 1 cut(s) 313
KflI GGGWCCC 1 cut(s) 361
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 8 cut(s) 79, 135, 265, 507, 547, 560, 779, 792
LmnI GCTCC 3 cut(s) 282, 295, 910
Lsp1109I GCAGC 1 cut(s) 1070
LweI GCATC 5 cut(s) 277, 383, 469, 624, 1045
MabI ACCWGGT 2 cut(s) 345, 388
MaeI CTAG 2 cut(s) 612, 633
MaeII ACGT 4 cut(s) 62, 122, 180, 997
MaeIII GTNAC 5 cut(s) 52, 162, 205, 621, 747
MalI GATC 8 cut(s) 81, 137, 267, 509, 549, 562, 781, 794
MbiI CCGCTC 1 cut(s) 961
MboI GATC 8 cut(s) 79, 135, 265, 507, 547, 560, 779, 792
MboII GAAGA 3 cut(s) 817, 916, 1059
MfeI CAATTG 1 cut(s) 189
MflI RGATCY 2 cut(s) 507, 779
MhlI GDGCHC 2 cut(s) 148, 397
MluCI AATT 5 cut(s) 189, 868, 1070, 1125, 1156
Mly113I GGCGCC 1 cut(s) 314
MlyI GAGTC 1 cut(s) 1181
MmeI TCCRAC 2 cut(s) 947, 1164
MroXI GAANNNNTTC 1 cut(s) 1013
MseI TTAA 3 cut(s) 212, 671, 987
MspI CCGG 4 cut(s) 6, 110, 258, 331
MspR9I CCNGG 6 cut(s) 7, 347, 390, 558, 777, 1192
MunI CAATTG 1 cut(s) 189
MvaI CCWGG 5 cut(s) 347, 390, 558, 777, 1192
MvnI CGCG 1 cut(s) 729
MwoI GCNNNNNNNGC 2 cut(s) 232, 392
NarI GGCGCC 1 cut(s) 314
NciI CCSGG 1 cut(s) 7
NdeII GATC 8 cut(s) 79, 135, 265, 507, 547, 560, 779, 792
NlaIII CATG 2 cut(s) 176, 276
NlaIV GGNNCC 5 cut(s) 278, 315, 362, 363, 509
NmeAIII GCCGAG 1 cut(s) 570
NmuCI GTSAC 2 cut(s) 621, 747
PaeR7I CTCGAG 1 cut(s) 678
PcsI WCGNNNNNNNCGW 1 cut(s) 131
PdmI GAANNNNTTC 1 cut(s) 1013
PflFI GACNNNGTC 1 cut(s) 124
PfoI TCCNGGA 2 cut(s) 556, 1190
PinAI ACCGGT 1 cut(s) 257
PkrI GCNGC 1 cut(s) 1060
PleI GAGTC 1 cut(s) 1181
PluTI GGCGCC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 1181
Ppu21I YACGTR 1 cut(s) 998
PpuMI RGGWCCY 1 cut(s) 361
Psp5II RGGWCCY 1 cut(s) 361
Psp6I CCWGG 5 cut(s) 345, 388, 556, 775, 1190
PspGI CCWGG 5 cut(s) 345, 388, 556, 775, 1190
PspN4I GGNNCC 5 cut(s) 278, 315, 362, 363, 509
PspPI GGNCC 2 cut(s) 361, 529
PspPPI RGGWCCY 1 cut(s) 361
PsuI RGATCY 2 cut(s) 507, 779
PsyI GACNNNGTC 1 cut(s) 124
RsaI GTAC 3 cut(s) 185, 307, 468
RsaNI GTAC 3 cut(s) 184, 306, 467
SaqAI TTAA 3 cut(s) 212, 671, 987
SatI GCNGC 1 cut(s) 1059
Sau3AI GATC 8 cut(s) 79, 135, 265, 507, 547, 560, 779, 792
Sau96I GGNCC 2 cut(s) 361, 529
SchI GAGTC 1 cut(s) 1181
ScrFI CCNGG 6 cut(s) 7, 347, 390, 558, 777, 1192
SduI GDGCHC 2 cut(s) 148, 397
SexAI ACCWGGT 2 cut(s) 345, 388
SfaNI GCATC 5 cut(s) 277, 383, 469, 624, 1045
SfcI CTRYAG 2 cut(s) 355, 576
SfoI GGCGCC 1 cut(s) 315
Sfr274I CTCGAG 1 cut(s) 678
SinI GGWCC 1 cut(s) 361
SlaI CTCGAG 1 cut(s) 678
SmlI CTYRAG 1 cut(s) 678
SmoI CTYRAG 1 cut(s) 678
Sse9I AATT 5 cut(s) 189, 868, 1070, 1125, 1156
SsiI CCGC 3 cut(s) 113, 785, 959
SspDI GGCGCC 1 cut(s) 313
SspMI CTAG 2 cut(s) 612, 633
StyD4I CCNGG 6 cut(s) 5, 345, 388, 556, 775, 1190
StyI CCWWGG 3 cut(s) 532, 595, 1104
TaaI ACNGT 3 cut(s) 150, 845, 1200
TaiI ACGT 4 cut(s) 65, 125, 183, 1000
TaqI TCGA 3 cut(s) 246, 679, 976
TasI AATT 5 cut(s) 189, 868, 1070, 1125, 1156
TatI WGTACW 2 cut(s) 305, 466
Tru1I TTAA 3 cut(s) 212, 671, 987
Tru9I TTAA 3 cut(s) 212, 671, 987
TscAI CASTG 3 cut(s) 850, 1035, 1144
TseFI GTSAC 2 cut(s) 621, 747
TseI GCWGC 1 cut(s) 1058
Tsp45I GTSAC 2 cut(s) 621, 747
TspDTI ATGAA 4 cut(s) 161, 444, 444, 685
TspRI CASTG 3 cut(s) 850, 1035, 1144
Tth111I GACNNNGTC 1 cut(s) 124
VneI GTGCAC 1 cut(s) 144
VpaK11BI GGWCC 1 cut(s) 361
XagI CCTNNNNNAGG 1 cut(s) 599
XapI RAATTY 2 cut(s) 1125, 1156
XhoI CTCGAG 1 cut(s) 678
XmnI GAANNNNTTC 1 cut(s) 1013
XspI CTAG 2 cut(s) 612, 633
ZraI GACGTC 2 cut(s) 63, 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.