Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0019595

Physical Location & Seq

Genomic Coordinates Forward (+)

16118830 .. 16126151

Gene Structure 7322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G33520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAGTCTACACTCTCAGCTTTCTCAACCGTCAAGGCAACAGCGATGGCTCGAAGTAGTGGTGGTCCTTCATTACCTCTCCTCACTATTTCTAAAGCACTTAACCGCCACTTTACCGGCGCCAGACACCTCCATCCTTTATTGCTCGCTCGCTGTTCTCCCTCCGTGCGACGTCTTGGTGGGTTTCATGGCAGTCGATTTACTTCGTCGAATTCAGCTTTGAGAAGCTTGGGAGCTGCTGTTTTGCCGGTAATCCGACACCGTTTAGAGTGTTTGTCGAGCTCATCGCCGTCTTTCAGGAGTATCTCAAGTGGCGGCGGTTCTGGATTTGGGGGGTATAATGGTGGAAGCGGCGGTGGTGGTGGCGGAGGATCGGAGAGTGGTGATTCCAAGTCAAAACTGGGTGCTAATGCAAGTGATGGTGTCTCTGTTCCGTCGTCAGATATCATTATTCTCGATGTTGGAGGGATGACATGTGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGCCAACCTCAAGTTGCTTCAGCTAGTGTTAATCTCACCACCGAGACGGCAATTGTGTGGCCTGTACCGGAAGCTAAAAGTGTACCTGATTGGCAAAAGAGTTTAGGCGAGACGCTTGCAAACCATCTGACCAATTGCGGGTTTCAGTCTACTCCTCGAGGGGAAGTTCCTGAAGATATTGCAGGAGAGTTTGCACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005375 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008152 GO:0008324 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009767 GO:0009941 GO:0009987 GO:0015075 GO:0015318 GO:0015979 GO:0016530 GO:0016531 GO:0019684 GO:0022857 GO:0022890 GO:0022900 GO:0030001 GO:0031967 GO:0031975 GO:0034220 GO:0035434 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046873 GO:0046914 GO:0046915 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055085 GO:0055114 GO:0065007 GO:0065008 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0140104

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

237

Amino Acids

24.01

Weight (kDa)

8.93

Isoelectric Point (pI)

57.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	152 - 211	2.2e-10	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33520 AT4G33520
malus_domestica	MD05G1044800.v1.1 MD10G1051800.v1.1
pyrus_communis	pycom10g03660
rosa_chinensis	RchiOBHm_Chr6g0271811
rosa_samantha	Rh6CG181000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	175
AbsI	CCTCGAGG	1 cut(s)	669
AccB1I	GGYRCC	1 cut(s)	119
AccI	GTMKAC	2 cut(s)	8, 662
AciI	CCGC	7 cut(s)	106, 315, 318, 351, 354, 366, 651
AclWI	GGATC	1 cut(s)	379
AcsI	RAATTY	1 cut(s)	211
AcuI	CTGAAG	2 cut(s)	516, 705
AcyI	GRCGYC	2 cut(s)	120, 172
AfaI	GTAC	2 cut(s)	579, 597
AfiI	CCNNNNNNNGG	1 cut(s)	651
AflIII	ACRYGT	1 cut(s)	473
AluBI	AGCT	7 cut(s)	20, 218, 228, 236, 282, 536, 587
AluI	AGCT	7 cut(s)	20, 218, 228, 236, 282, 536, 587
Alw21I	GWGCWC	1 cut(s)	284
Alw26I	GTCTC	3 cut(s)	430, 551, 617
AlwI	GGATC	1 cut(s)	379
Ama87I	CYCGRG	1 cut(s)	669
AoxI	GGCC	1 cut(s)	572
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	2 cut(s)	395, 541
AvaI	CYCGRG	1 cut(s)	669
AvaII	GGWCC	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	4 cut(s)	40, 141, 413, 645
BceAI	ACGGC	2 cut(s)	274, 576
BcgI	CGANNNNNNTGC	2 cut(s)	611, 645
BcoDI	GTCTC	3 cut(s)	430, 551, 617
BfaI	CTAG	1 cut(s)	537
BfoI	RGCGCY	1 cut(s)	123
BisI	GCNGC	3 cut(s)	237, 316, 352
BlsI	GCNGC	3 cut(s)	238, 317, 353
Bme18I	GGWCC	1 cut(s)	65
BmeT110I	CYCGRG	1 cut(s)	669
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	121
BmrI	ACTGGG	1 cut(s)	410
BmuI	ACTGGG	1 cut(s)	410
BpuEI	CTTGAG	2 cut(s)	292, 507
BsaHI	GRCGYC	2 cut(s)	120, 172
BsaWI	WCCGGW	1 cut(s)	580
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	651
Bse118I	RCCGGY	2 cut(s)	116, 247
Bse1I	ACTGG	2 cut(s)	405, 513
BseGI	GGATG	2 cut(s)	133, 474
BseLI	CCNNNNNNNGG	1 cut(s)	651
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	2 cut(s)	405, 513
BseRI	GAGGAG	2 cut(s)	71, 657
BseXI	GCAGC	1 cut(s)	223
BshFI	GGCC	1 cut(s)	574
BshNI	GGYRCC	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	284
BsiHKCI	CYCGRG	1 cut(s)	669
BsiSI	CCGG	3 cut(s)	117, 248, 581
BslI	CCNNNNNNNGG	1 cut(s)	651
BsmAI	GTCTC	3 cut(s)	430, 551, 617
BsmBI	CGTCTC	2 cut(s)	551, 617
BsnI	GGCC	1 cut(s)	574
BsoBI	CYCGRG	1 cut(s)	669
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	1 cut(s)	371
BspACI	CCGC	7 cut(s)	106, 315, 318, 351, 354, 366, 651
BspANI	GGCC	1 cut(s)	574
BspCNI	CTCAG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	121
BspPI	GGATC	1 cut(s)	379
BspT107I	GGYRCC	1 cut(s)	119
BsrFI	RCCGGY	2 cut(s)	116, 247
BsrI	ACTGG	2 cut(s)	405, 513
BssAI	RCCGGY	2 cut(s)	116, 247
BssMI	GATC	1 cut(s)	371
BssNI	GRCGYC	2 cut(s)	120, 172
Bst4CI	ACNGT	2 cut(s)	31, 263
BstACI	GRCGYC	2 cut(s)	120, 172
BstC8I	GCNNGC	3 cut(s)	147, 151, 630
BstDEI	CTNAG	1 cut(s)	16
BstF5I	GGATG	2 cut(s)	133, 474
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	1 cut(s)	374
BstMAI	GTCTC	3 cut(s)	430, 551, 617
BstMBI	GATC	1 cut(s)	371
BstNSI	RCATGY	1 cut(s)	477
BstV1I	GCAGC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	574
BtgZI	GCGATG	2 cut(s)	59, 270
BtsCI	GGATG	2 cut(s)	133, 474
Cac8I	GCNNGC	3 cut(s)	147, 151, 630
CfoI	GCGC	1 cut(s)	122
Cfr10I	RCCGGY	2 cut(s)	116, 247
Cfr13I	GGNCC	1 cut(s)	65
CseI	GACGC	1 cut(s)	634
Csp6I	GTAC	2 cut(s)	578, 596
CviAII	CATG	2 cut(s)	188, 474
CviQI	GTAC	2 cut(s)	578, 596
DdeI	CTNAG	1 cut(s)	16
DinI	GGCGCC	1 cut(s)	121
DpnI	GATC	1 cut(s)	373
DpnII	GATC	1 cut(s)	371
EciI	GGCGGA	1 cut(s)	381
Ecl136II	GAGCTC	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	284
Eco32I	GATATC	1 cut(s)	445
Eco47I	GGWCC	1 cut(s)	65
Eco53kI	GAGCTC	1 cut(s)	282
Eco57I	CTGAAG	2 cut(s)	516, 705
Eco88I	CYCGRG	1 cut(s)	669
EcoICRI	GAGCTC	1 cut(s)	282
EcoRI	GAATTC	1 cut(s)	211
EcoRV	GATATC	1 cut(s)	445
EcoT38I	GRGCYC	1 cut(s)	284
EgeI	GGCGCC	1 cut(s)	121
EheI	GGCGCC	1 cut(s)	121
Esp3I	CGTCTC	2 cut(s)	551, 617
FaeI	CATG	2 cut(s)	191, 477
FaiI	YATR	3 cut(s)	189, 339, 475
FatI	CATG	2 cut(s)	187, 473
FauI	CCCGC	1 cut(s)	644
FblI	GTMKAC	2 cut(s)	8, 662
Fnu4HI	GCNGC	3 cut(s)	237, 316, 352
FokI	GGATG	2 cut(s)	120, 481
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	3 cut(s)	237, 316, 352
FspBI	CTAG	1 cut(s)	537
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	3 cut(s)	237, 316, 352
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	574
HapII	CCGG	3 cut(s)	117, 248, 581
HgaI	GACGC	1 cut(s)	634
HhaI	GCGC	1 cut(s)	122
Hin1I	GRCGYC	2 cut(s)	120, 172
Hin1II	CATG	2 cut(s)	191, 477
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HindIII	AAGCTT	1 cut(s)	226
HinfI	GANTC	2 cut(s)	5, 386
HpaII	CCGG	3 cut(s)	117, 248, 581
HphI	GGTGA	2 cut(s)	395, 541
Hpy166II	GTNNAC	3 cut(s)	9, 596, 663
Hpy188I	TCNGA	4 cut(s)	257, 376, 442, 642
Hpy188III	TCNNGA	4 cut(s)	298, 324, 455, 683
Hpy8I	GTNNAC	3 cut(s)	9, 596, 663
Hpy99I	CGWCG	3 cut(s)	174, 211, 439
HpyAV	CCTTC	1 cut(s)	78
HpyCH4III	ACNGT	2 cut(s)	31, 263
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	4 cut(s)	413, 632, 695, 707
HpyF3I	CTNAG	1 cut(s)	16
HpySE526I	ACGT	1 cut(s)	172
Hsp92I	GRCGYC	2 cut(s)	120, 172
Hsp92II	CATG	2 cut(s)	191, 477
HspAI	GCGC	1 cut(s)	120
KasI	GGCGCC	1 cut(s)	119
Kzo9I	GATC	1 cut(s)	371
LmnI	GCTCC	1 cut(s)	233
Lsp1109I	GCAGC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	537
MaeII	ACGT	1 cut(s)	172
MalI	GATC	1 cut(s)	373
MboI	GATC	1 cut(s)	371
MboII	GAAGA	3 cut(s)	511, 514, 698
MfeI	CAATTG	2 cut(s)	564, 646
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	3 cut(s)	211, 564, 646
Mly113I	GGCGCC	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	2 cut(s)	280, 442
MseI	TTAA	2 cut(s)	102, 543
MspI	CCGG	3 cut(s)	117, 248, 581
MunI	CAATTG	2 cut(s)	564, 646
NarI	GGCGCC	1 cut(s)	120
NdeII	GATC	1 cut(s)	371
NlaIII	CATG	2 cut(s)	191, 477
NlaIV	GGNNCC	1 cut(s)	121
NspI	RCATGY	1 cut(s)	477
PaeR7I	CTCGAG	1 cut(s)	669
PciI	ACATGT	1 cut(s)	473
PfeI	GAWTC	1 cut(s)	386
PkrI	GCNGC	3 cut(s)	238, 317, 353
PleI	GAGTC	1 cut(s)	13
PluTI	GGCGCC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	13
PscI	ACATGT	1 cut(s)	473
Psp124BI	GAGCTC	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	65
PspXI	VCTCGAGB	1 cut(s)	669
RsaI	GTAC	2 cut(s)	579, 597
RsaNI	GTAC	2 cut(s)	578, 596
SacI	GAGCTC	1 cut(s)	284
SaqAI	TTAA	2 cut(s)	102, 543
SatI	GCNGC	3 cut(s)	237, 316, 352
Sau3AI	GATC	1 cut(s)	371
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	284
SfoI	GGCGCC	1 cut(s)	121
Sfr274I	CTCGAG	1 cut(s)	669
SinI	GGWCC	1 cut(s)	65
SlaI	CTCGAG	1 cut(s)	669
SmlI	CTYRAG	3 cut(s)	307, 522, 669
SmoI	CTYRAG	3 cut(s)	307, 522, 669
Sse9I	AATT	3 cut(s)	211, 564, 646
SsiI	CCGC	7 cut(s)	106, 315, 318, 351, 354, 366, 651
SspDI	GGCGCC	1 cut(s)	119
SspMI	CTAG	1 cut(s)	537
SstI	GAGCTC	1 cut(s)	284
TaaI	ACNGT	2 cut(s)	31, 263
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	6 cut(s)	52, 196, 209, 278, 456, 670
TasI	AATT	3 cut(s)	211, 564, 646
TauI	GCSGC	2 cut(s)	318, 354
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	2 cut(s)	102, 543
Tru9I	TTAA	2 cut(s)	102, 543
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	60, 176
TspGWI	ACGGA	2 cut(s)	154, 423
VpaK11BI	GGWCC	1 cut(s)	65
XapI	RAATTY	1 cut(s)	211
XceI	RCATGY	1 cut(s)	477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XhoI	CTCGAG	1 cut(s)	669
XmiI	GTMKAC	2 cut(s)	8, 662
XspI	CTAG	1 cut(s)	537
ZraI	GACGTC	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.