Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0019595

Physical Location & Seq

Genomic Coordinates Forward (+)

28924571 .. 28956564

Gene Structure 31994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG181000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGAGTTGCTCAATTTCCAACAGGGAATGACATGCGGGGGATGTGCAGCAAGTGTGAAGCGAATTCTAGAAAGCCAACCACAGGTATCATCTGCTAGTGTAAATCTTACGACTGAGGTGGCAATTGTCTGGCCTGTGTCTGAAGCCAAGCTCTCACCAAACTGGCAAAAGCAGTTGGGAGAGACACTTGCAAACCATTTGACTAATTGTGGTTTCAATTCTAACATTCGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005375 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008152 GO:0008324 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009767 GO:0009941 GO:0009987 GO:0015075 GO:0015318 GO:0015979 GO:0016530 GO:0016531 GO:0019684 GO:0022857 GO:0022890 GO:0022900 GO:0030001 GO:0031967 GO:0031975 GO:0034220 GO:0035434 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046873 GO:0046914 GO:0046915 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055085 GO:0055114 GO:0065007 GO:0065008 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0140104

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

78

Amino Acids

8.42

Weight (kDa)

6.53

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	8 - 72	6.4e-10	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33520 AT4G33520
malus_domestica	MD05G1044800.v1.1 MD10G1051800.v1.1
pyrus_communis	pycom10g03660
rosa_chinensis	RchiOBHm_Chr6g0271811
rosa_samantha	Rh6CG181000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	162
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	1 cut(s)	217
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	47
ApoI	RAATTY	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	2 cut(s)	68, 96
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	167
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	59
BsgI	GTGCAG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	133
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	167
BstDEI	CTNAG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	47
BstMAI	GTCTC	1 cut(s)	176
BstNSI	RCATGY	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	47
CviAII	CATG	2 cut(s)	33, 234
CviJI	RGCY	4 cut(s)	75, 133, 146, 151
CviKI_1	RGCY	4 cut(s)	75, 133, 146, 151
DdeI	CTNAG	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	162
EcoRI	GAATTC	1 cut(s)	63
FaeI	CATG	2 cut(s)	36, 237
FaiI	YATR	2 cut(s)	34, 235
FatI	CATG	2 cut(s)	32, 233
FauI	CCCGC	1 cut(s)	29
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	2 cut(s)	68, 96
GluI	GCNGC	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	133
Hin1II	CATG	2 cut(s)	36, 237
HphI	GGTGA	1 cut(s)	147
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	1 cut(s)	68
HpyCH4V	TGCA	3 cut(s)	47, 191, 233
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	36, 237
LpnPI	CCDG	5 cut(s)	8, 68, 115, 147, 148
Lsp1109I	GCAGC	1 cut(s)	59
MaeI	CTAG	2 cut(s)	68, 96
MfeI	CAATTG	1 cut(s)	123
MluCI	AATT	5 cut(s)	13, 63, 123, 205, 217
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	1 cut(s)	109
MunI	CAATTG	1 cut(s)	123
NlaIII	CATG	2 cut(s)	36, 237
NspI	RCATGY	1 cut(s)	36
PkrI	GCNGC	1 cut(s)	49
SatI	GCNGC	1 cut(s)	48
SetI	ASST	3 cut(s)	87, 120, 153
Sse9I	AATT	5 cut(s)	13, 63, 123, 205, 217
SsiI	CCGC	1 cut(s)	36
SspMI	CTAG	2 cut(s)	68, 96
TasI	AATT	5 cut(s)	13, 63, 123, 205, 217
TseI	GCWGC	1 cut(s)	47
XapI	RAATTY	1 cut(s)	63
XbaI	TCTAGA	1 cut(s)	67
XceI	RCATGY	1 cut(s)	36
XspI	CTAG	2 cut(s)	68, 96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.