Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0019595

Physical Location & Seq

Genomic Coordinates Forward (+)

7717723 .. 7720453

Gene Structure 2731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1044800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTCAATGGAGGCCACATTGTCCGCCGCGACGCCCACAACGGCAGCTCTCCTTGCCGCCTCCAAATCCCTCAACCGCCGACTCGCCAGGACTTTCCTCAGTCAACGCCTCCCCAGTCGTCTCCTTGCTCGCAGGCACCTGACTTCCCTTCACACCAACTACTACGGCTTTCAGACCCCTAAACCTAATCCTCTCTCTTCCTCGTCTCTGAGGAGTCTCTGCGTCGTTGATCCGCTCTTACGGCGCCGTTTAGAGTGCGTTGGTAGCTCCGCTGCTTCATTTGCCTCTGGTGGTGGAAATGGTGGCTTTGGCGGAGAGAGTGGCGGCAGAGGCGGTGACGGCGAGGGAGGTTCCGGCGGCGGCGATGCCAAGTCCAAGGTTGTTGCTGCTGGAGGCGATGAGGTTTCGGTGCTCTCCACTGATGTCATTATTCTCGATGTTGGAGGAATGACATGTGGGGGATGTGCAGCCAGTGTGAAGCGAATTCTAGAAAATCAACCTCAGGTGTCGTCTGCGAGTGTAAATCTCACAACAGAGACGGCAATTGTGTGGCCTGTGTCCGAAGAGAAGGCTGCACCAAACTGGCAAAAGCAGCTAGGAGAGACACTTGCAAACCAATTGACCAGTTGCGGTTTCAAGTCTAACCTTCGTGTGGCAGGTGAGGGAGCTACGGAAGGAGATATATCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005375 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008152 GO:0008324 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009767 GO:0009941 GO:0009987 GO:0015075 GO:0015318 GO:0015979 GO:0016530 GO:0016531 GO:0019684 GO:0022857 GO:0022890 GO:0022900 GO:0030001 GO:0031967 GO:0031975 GO:0034220 GO:0035434 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046873 GO:0046914 GO:0046915 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055085 GO:0055114 GO:0065007 GO:0065008 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0140104

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

231

Amino Acids

23.54

Weight (kDa)

8.66

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	145 - 212	8e-11	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33520 AT4G33520
malus_domestica	MD05G1044800.v1.1 MD10G1051800.v1.1
pyrus_communis	pycom10g03660
rosa_chinensis	RchiOBHm_Chr6g0271811
rosa_samantha	Rh6CG181000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	647
Acc36I	ACCTGC	1 cut(s)	647
AccB1I	GGYRCC	2 cut(s)	135, 243
AccBSI	CCGCTC	1 cut(s)	235
AccII	CGCG	1 cut(s)	29
AclWI	GGATC	1 cut(s)	224
AcsI	RAATTY	1 cut(s)	483
AcyI	GRCGYC	2 cut(s)	32, 244
AfiI	CCNNNNNNNGG	1 cut(s)	652
AflIII	ACRYGT	1 cut(s)	452
AgsI	TTSAA	1 cut(s)	637
AjnI	CCWGG	1 cut(s)	86
AluBI	AGCT	4 cut(s)	47, 267, 595, 668
AluI	AGCT	4 cut(s)	47, 267, 595, 668
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	5 cut(s)	125, 210, 221, 530, 596
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	2 cut(s)	12, 551
ApeKI	GCWGC	6 cut(s)	44, 272, 386, 467, 572, 592
ApoI	RAATTY	1 cut(s)	483
AspLEI	GCGC	1 cut(s)	246
AsuHPI	GGTGA	3 cut(s)	347, 671, 678
AxyI	CCTNAGG	1 cut(s)	501
BanI	GGYRCC	2 cut(s)	135, 243
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	6 cut(s)	56, 259, 373, 479, 559, 604
BceAI	ACGGC	6 cut(s)	57, 181, 231, 257, 355, 555
BciT130I	CCWGG	1 cut(s)	88
BcoDI	GTCTC	5 cut(s)	125, 210, 221, 530, 596
BfaI	CTAG	2 cut(s)	488, 596
BfoI	RGCGCY	1 cut(s)	247
BfuAI	ACCTGC	1 cut(s)	647
Bme1390I	CCNGG	1 cut(s)	88
BmiI	GGNNCC	3 cut(s)	137, 245, 352
BmrFI	CCNGG	1 cut(s)	88
BmrI	ACTGGG	1 cut(s)	108
BmsI	GCATC	1 cut(s)	355
BmuI	ACTGGG	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	411
BsaHI	GRCGYC	2 cut(s)	32, 244
BsaJI	CCNNGG	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	1 cut(s)	652
Bse1I	ACTGG	4 cut(s)	114, 471, 587, 624
Bse21I	CCTNAGG	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	1 cut(s)	467
BseLI	CCNNNNNNNGG	1 cut(s)	652
BseMII	CTCAG	3 cut(s)	112, 200, 515
BseNI	ACTGG	4 cut(s)	114, 471, 587, 624
BseRI	GAGGAG	1 cut(s)	226
BseXI	GCAGC	6 cut(s)	56, 259, 373, 479, 559, 604
BsgI	GTGCAG	2 cut(s)	486, 558
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	2 cut(s)	14, 553
BshNI	GGYRCC	2 cut(s)	135, 243
BsiHKAI	GWGCWC	1 cut(s)	414
BsiSI	CCGG	1 cut(s)	354
BslI	CCNNNNNNNGG	1 cut(s)	652
BsmAI	GTCTC	5 cut(s)	125, 210, 221, 530, 596
BsmBI	CGTCTC	3 cut(s)	125, 210, 530
BsnI	GGCC	2 cut(s)	14, 553
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	1 cut(s)	229
BspANI	GGCC	2 cut(s)	14, 553
BspCNI	CTCAG	3 cut(s)	111, 201, 514
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	3 cut(s)	137, 245, 352
BspMI	ACCTGC	1 cut(s)	647
BspPI	GGATC	1 cut(s)	224
BspT107I	GGYRCC	2 cut(s)	135, 243
BsrBI	CCGCTC	1 cut(s)	235
BsrI	ACTGG	4 cut(s)	114, 471, 587, 624
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	1 cut(s)	229
BssNI	GRCGYC	2 cut(s)	32, 244
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	1 cut(s)	88
Bst6I	CTCTTC	2 cut(s)	202, 558
BstACI	GRCGYC	2 cut(s)	32, 244
BstC8I	GCNNGC	2 cut(s)	130, 134
BstDEI	CTNAG	3 cut(s)	98, 209, 501
BstF5I	GGATG	1 cut(s)	467
BstFNI	CGCG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	1 cut(s)	232
BstMAI	GTCTC	5 cut(s)	125, 210, 221, 530, 596
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 241, 264, 281, 330, 339, 592
BstNI	CCWGG	1 cut(s)	88
BstNSI	RCATGY	1 cut(s)	456
BstSCI	CCNGG	1 cut(s)	86
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	6 cut(s)	56, 259, 373, 479, 559, 604
Bsu36I	CCTNAGG	1 cut(s)	501
BsuRI	GGCC	2 cut(s)	14, 553
BtgZI	GCGATG	2 cut(s)	378, 411
BtsCI	GGATG	1 cut(s)	467
BtsIMutI	CAGTG	2 cut(s)	417, 478
BveI	ACCTGC	1 cut(s)	647
Cac8I	GCNNGC	2 cut(s)	130, 134
CfoI	GCGC	1 cut(s)	246
CseI	GACGC	2 cut(s)	40, 211
CviAII	CATG	1 cut(s)	453
DdeI	CTNAG	3 cut(s)	98, 209, 501
DinI	GGCGCC	1 cut(s)	245
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
Eam1104I	CTCTTC	2 cut(s)	202, 558
EarI	CTCTTC	2 cut(s)	202, 558
EciI	GGCGGA	2 cut(s)	13, 327
Eco130I	CCWWGG	1 cut(s)	375
Eco81I	CCTNAGG	1 cut(s)	501
EcoRI	GAATTC	1 cut(s)	483
EcoRII	CCWGG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	375
EgeI	GGCGCC	1 cut(s)	245
EheI	GGCGCC	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	375
Esp3I	CGTCTC	3 cut(s)	125, 210, 530
FaeI	CATG	1 cut(s)	456
FaiI	YATR	3 cut(s)	454, 683, 691
FatI	CATG	1 cut(s)	452
FokI	GGATG	1 cut(s)	474
FspBI	CTAG	2 cut(s)	488, 596
GlaI	GCGC	1 cut(s)	245
GsuI	CTGGAG	1 cut(s)	411
HaeII	RGCGCY	1 cut(s)	247
HaeIII	GGCC	2 cut(s)	14, 553
HapII	CCGG	1 cut(s)	354
HgaI	GACGC	2 cut(s)	40, 211
HhaI	GCGC	1 cut(s)	246
Hin1I	GRCGYC	2 cut(s)	32, 244
Hin1II	CATG	1 cut(s)	456
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HincII	GTYRAC	1 cut(s)	104
HindII	GTYRAC	1 cut(s)	104
HinfI	GANTC	2 cut(s)	81, 214
HpaII	CCGG	1 cut(s)	354
HphI	GGTGA	3 cut(s)	347, 671, 678
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	3 cut(s)	174, 210, 562
Hpy188III	TCNNGA	2 cut(s)	434, 488
Hpy8I	GTNNAC	1 cut(s)	104
Hpy99I	CGWCG	2 cut(s)	34, 227
HpyAV	CCTTC	4 cut(s)	158, 562, 656, 668
HpyCH4V	TGCA	3 cut(s)	467, 575, 611
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 241, 264, 281, 330, 339, 592
HpyF3I	CTNAG	3 cut(s)	98, 209, 501
Hsp92I	GRCGYC	2 cut(s)	32, 244
Hsp92II	CATG	1 cut(s)	456
HspAI	GCGC	1 cut(s)	244
KasI	GGCGCC	1 cut(s)	243
Kzo9I	GATC	1 cut(s)	229
LmnI	GCTCC	2 cut(s)	272, 665
Lsp1109I	GCAGC	6 cut(s)	56, 259, 373, 479, 559, 604
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	2 cut(s)	488, 596
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	1 cut(s)	231
MbiI	CCGCTC	1 cut(s)	235
MboI	GATC	1 cut(s)	229
MboII	GAAGA	2 cut(s)	189, 575
MfeI	CAATTG	2 cut(s)	543, 617
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	3 cut(s)	483, 543, 617
Mly113I	GGCGCC	1 cut(s)	244
MlyI	GAGTC	2 cut(s)	75, 223
MmeI	TCCRAC	1 cut(s)	421
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	1 cut(s)	354
MspR9I	CCNGG	1 cut(s)	88
MunI	CAATTG	2 cut(s)	543, 617
MvaI	CCWGG	1 cut(s)	88
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	7 cut(s)	53, 241, 264, 281, 330, 339, 592
NarI	GGCGCC	1 cut(s)	244
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	1 cut(s)	456
NlaIV	GGNNCC	3 cut(s)	137, 245, 352
NmuCI	GTSAC	1 cut(s)	335
NspI	RCATGY	1 cut(s)	456
PaqCI	CACCTGC	1 cut(s)	647
PciI	ACATGT	1 cut(s)	452
PleI	GAGTC	2 cut(s)	75, 222
PluTI	GGCGCC	1 cut(s)	247
PpsI	GAGTC	2 cut(s)	75, 222
PscI	ACATGT	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	3 cut(s)	137, 245, 352
Sau3AI	GATC	1 cut(s)	229
SchI	GAGTC	2 cut(s)	75, 223
ScrFI	CCNGG	1 cut(s)	88
SduI	GDGCHC	1 cut(s)	414
SfaNI	GCATC	1 cut(s)	355
SfoI	GGCGCC	1 cut(s)	245
Sse9I	AATT	3 cut(s)	483, 543, 617
SspDI	GGCGCC	1 cut(s)	243
SspMI	CTAG	2 cut(s)	488, 596
StyD4I	CCNGG	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	375
TaqI	TCGA	1 cut(s)	435
TasI	AATT	3 cut(s)	483, 543, 617
TauI	GCSGC	5 cut(s)	29, 59, 327, 360, 363
TscAI	CASTG	2 cut(s)	424, 478
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	6 cut(s)	44, 272, 386, 467, 572, 592
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	1 cut(s)	267
TspGWI	ACGGA	1 cut(s)	686
TspRI	CASTG	2 cut(s)	424, 478
XapI	RAATTY	1 cut(s)	483
XbaI	TCTAGA	1 cut(s)	487
XceI	RCATGY	1 cut(s)	456
XspI	CTAG	2 cut(s)	488, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.