Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019595

Physical Location & Seq

Genomic Coordinates Forward (+)

31798817 .. 31802424

Gene Structure 3608 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24381

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGAGTCAACACTGAACGCGAGCACATCGACCACATTGGCTCTGCTCACCGTTACGAAAGCCCTGAACCGCCGACTTTGCAAGATCTTTCCGAGTCATCAACCCCTCGCGAGTCGATTGATAGCTCGCAGGCTCACTTGCAACTACGGCGGCTTTCATAGGCAGAGGCCTTTCTCTTCATCGACGCCGAGAAGGAGCCTCTGCGTGGTTGATCCTCCGACGCGGCGTCGTTTAGAGTGCGTTGCGAGCAACCATGCGTCATTTGCTTCCGGCGGTGGAAATGGTGGCTTCGGCGGCGAGAGTGGTGGCAGCGGCGGCGATGGTGGAGGTAGTTCGGACGGTGGCGATTCCAAGTCCAAGGTCGTTGCTTCTGGGGGCGATGACGTCTCGGCCGTCTCGACTGATGTCATACTGCTCGATGTTGGAGGAATGACATGTGGGGGATGTGCAGCAAGTGTGAAGCGAATTCTAGAAAGCCAACCACAGGTGTCATCTGCTAGTGTAAATCTTACGACTGAGGTGGCAATTATCTGGCCTGTGTCTGAAGCCAAGCTCTCACCAAACTGGCAAAAGCAGTTGGGAGAGACACTTGCAAACCATTTGACTAATTGTGGTTTCAATTCTAACATTCGTGGAGAAGTCAGGGAGCTACACAAGGAGATATATCACCATAGAACTGCAAAACATTTCTTGTCAGGATCAACCATAATTCTTTATGTCTCAACTGGTTGGTGGATTGGTTTGAGGGCAATTCTATGGCAGAGCACCCATTGGTTTTGGAGAATGTGCAGTTCCACTTCCAGTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005375 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008152 GO:0008324 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009767 GO:0009941 GO:0009987 GO:0015075 GO:0015318 GO:0015979 GO:0016530 GO:0016531 GO:0019684 GO:0022857 GO:0022890 GO:0022900 GO:0030001 GO:0031967 GO:0031975 GO:0034220 GO:0035434 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046873 GO:0046914 GO:0046915 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055085 GO:0055114 GO:0065007 GO:0065008 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0140104

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

269

Amino Acids

28.75

Weight (kDa)

9.38

Isoelectric Point (pI)

53.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	139 - 181	2.1e-09	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33520 AT4G33520
malus_domestica	MD05G1044800.v1.1 MD10G1051800.v1.1
pyrus_communis	pycom10g03660
rosa_chinensis	RchiOBHm_Chr6g0271811
rosa_samantha	Rh6CG181000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	387
AccII	CGCG	3 cut(s)	20, 110, 223
AciI	CCGC	7 cut(s)	70, 150, 223, 273, 294, 312, 315
AclWI	GGATC	2 cut(s)	206, 706
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	1 cut(s)	465
AcuI	CTGAAG	1 cut(s)	564
AcyI	GRCGYC	3 cut(s)	185, 226, 384
AfiI	CCNNNNNNNGG	2 cut(s)	205, 484
AflIII	ACRYGT	1 cut(s)	434
AgsI	TTSAA	1 cut(s)	619
AhdI	GACNNNNNGTC	1 cut(s)	225
AluBI	AGCT	3 cut(s)	125, 553, 649
AluI	AGCT	3 cut(s)	125, 553, 649
Alw21I	GWGCWC	2 cut(s)	26, 767
Alw26I	GTCTC	4 cut(s)	391, 400, 578, 724
AlwI	GGATC	2 cut(s)	206, 706
AoxI	GGCC	3 cut(s)	167, 390, 533
ApeKI	GCWGC	2 cut(s)	309, 449
ApoI	RAATTY	1 cut(s)	465
AsuHPI	GGTGA	3 cut(s)	40, 549, 659
Bbv12I	GWGCWC	2 cut(s)	26, 767
BbvI	GCAGC	2 cut(s)	321, 461
BccI	CCATC	1 cut(s)	314
BceAI	ACGGC	2 cut(s)	163, 377
BcoDI	GTCTC	4 cut(s)	391, 400, 578, 724
BfaI	CTAG	2 cut(s)	470, 498
BglII	AGATCT	1 cut(s)	84
BisI	GCNGC	7 cut(s)	151, 224, 295, 310, 313, 316, 450
BlsI	GCNGC	7 cut(s)	152, 225, 296, 311, 314, 317, 451
BmeRI	GACNNNNNGTC	1 cut(s)	225
BmiI	GGNNCC	1 cut(s)	197
BoxI	GACNNNNGTC	1 cut(s)	404
BsaHI	GRCGYC	3 cut(s)	185, 226, 384
BsaJI	CCNNGG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 484
Bse1I	ACTGG	3 cut(s)	569, 730, 801
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	1 cut(s)	449
BseLI	CCNNNNNNNGG	2 cut(s)	205, 484
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	3 cut(s)	569, 730, 801
BseX3I	CGGCCG	1 cut(s)	390
BseXI	GCAGC	2 cut(s)	321, 461
BsgI	GTGCAG	2 cut(s)	468, 808
Bsh1236I	CGCG	3 cut(s)	20, 110, 223
Bsh1285I	CGRYCG	1 cut(s)	393
BshFI	GGCC	3 cut(s)	169, 392, 535
BsiEI	CGRYCG	1 cut(s)	393
BsiHKAI	GWGCWC	2 cut(s)	26, 767
BsiSI	CCGG	1 cut(s)	270
BslI	CCNNNNNNNGG	2 cut(s)	205, 484
BsmAI	GTCTC	4 cut(s)	391, 400, 578, 724
BsmBI	CGTCTC	2 cut(s)	391, 400
BsnI	GGCC	3 cut(s)	169, 392, 535
Bsp1286I	GDGCHC	2 cut(s)	26, 767
Bsp143I	GATC	3 cut(s)	84, 211, 698
Bsp68I	TCGCGA	1 cut(s)	110
BspACI	CCGC	7 cut(s)	70, 150, 223, 273, 294, 312, 315
BspANI	GGCC	3 cut(s)	169, 392, 535
BspCNI	CTCAG	1 cut(s)	508
BspFNI	CGCG	3 cut(s)	20, 110, 223
BspLI	GGNNCC	1 cut(s)	197
BspPI	GGATC	2 cut(s)	206, 706
BsrI	ACTGG	3 cut(s)	569, 730, 801
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	3 cut(s)	84, 211, 698
BssNI	GRCGYC	3 cut(s)	185, 226, 384
BssT1I	CCWWGG	1 cut(s)	357
Bst4CI	ACNGT	2 cut(s)	52, 341
Bst6I	CTCTTC	1 cut(s)	181
BstACI	GRCGYC	3 cut(s)	185, 226, 384
BstC8I	GCNNGC	4 cut(s)	22, 127, 131, 247
BstDEI	CTNAG	1 cut(s)	516
BstF5I	GGATG	1 cut(s)	449
BstFNI	CGCG	3 cut(s)	20, 110, 223
BstKTI	GATC	3 cut(s)	87, 214, 701
BstMAI	GTCTC	4 cut(s)	391, 400, 578, 724
BstMBI	GATC	3 cut(s)	84, 211, 698
BstMCI	CGRYCG	1 cut(s)	393
BstMWI	GCNNNNNNNGC	6 cut(s)	78, 147, 246, 263, 294, 315
BstNSI	RCATGY	1 cut(s)	438
BstPAI	GACNNNNGTC	1 cut(s)	404
BstUI	CGCG	3 cut(s)	20, 110, 223
BstV1I	GCAGC	2 cut(s)	321, 461
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BstZI	CGGCCG	1 cut(s)	390
BsuRI	GGCC	3 cut(s)	169, 392, 535
BtgZI	GCGATG	2 cut(s)	333, 393
BtsCI	GGATG	1 cut(s)	449
BtsIMutI	CAGTG	1 cut(s)	11
BtuMI	TCGCGA	1 cut(s)	110
Cac8I	GCNNGC	4 cut(s)	22, 127, 131, 247
CseI	GACGC	4 cut(s)	193, 215, 229, 246
CviAII	CATG	2 cut(s)	254, 435
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	3 cut(s)	86, 213, 700
DpnII	GATC	3 cut(s)	84, 211, 698
DriI	GACNNNNNGTC	1 cut(s)	225
EaeI	YGGCCR	1 cut(s)	390
EagI	CGGCCG	1 cut(s)	390
Eam1104I	CTCTTC	1 cut(s)	181
Eam1105I	GACNNNNNGTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	181
EclXI	CGGCCG	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	357
Eco147I	AGGCCT	1 cut(s)	169
Eco52I	CGGCCG	1 cut(s)	390
Eco57I	CTGAAG	1 cut(s)	564
EcoRI	GAATTC	1 cut(s)	465
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
Esp3I	CGTCTC	2 cut(s)	391, 400
FaeI	CATG	2 cut(s)	257, 438
FatI	CATG	2 cut(s)	253, 434
Fnu4HI	GCNGC	7 cut(s)	151, 224, 295, 310, 313, 316, 450
FokI	GGATG	1 cut(s)	456
Fsp4HI	GCNGC	7 cut(s)	151, 224, 295, 310, 313, 316, 450
FspBI	CTAG	2 cut(s)	470, 498
GluI	GCNGC	7 cut(s)	151, 224, 295, 310, 313, 316, 450
HaeIII	GGCC	3 cut(s)	169, 392, 535
HapII	CCGG	1 cut(s)	270
HgaI	GACGC	4 cut(s)	193, 215, 229, 246
Hin1I	GRCGYC	3 cut(s)	185, 226, 384
Hin1II	CATG	2 cut(s)	257, 438
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	4 cut(s)	5, 94, 112, 347
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	3 cut(s)	40, 549, 659
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	4 cut(s)	93, 219, 337, 544
Hpy188III	TCNNGA	4 cut(s)	109, 397, 470, 696
Hpy8I	GTNNAC	1 cut(s)	9
Hpy99I	CGWCG	3 cut(s)	187, 223, 231
HpyAV	CCTTC	1 cut(s)	186
HpyCH4III	ACNGT	2 cut(s)	52, 341
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	6 cut(s)	81, 141, 449, 593, 680, 789
HpyF10VI	GCNNNNNNNGC	6 cut(s)	78, 147, 246, 263, 294, 315
HpyF3I	CTNAG	1 cut(s)	516
HpySE526I	ACGT	1 cut(s)	384
Hsp92I	GRCGYC	3 cut(s)	185, 226, 384
Hsp92II	CATG	2 cut(s)	257, 438
Kzo9I	GATC	3 cut(s)	84, 211, 698
LmnI	GCTCC	2 cut(s)	195, 646
Lsp1109I	GCAGC	2 cut(s)	321, 461
MaeI	CTAG	2 cut(s)	470, 498
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	3 cut(s)	86, 213, 700
MboI	GATC	3 cut(s)	84, 211, 698
MboII	GAAGA	1 cut(s)	168
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	2 cut(s)	26, 767
MluCI	AATT	6 cut(s)	465, 525, 607, 619, 708, 750
MlyI	GAGTC	3 cut(s)	14, 103, 121
MmeI	TCCRAC	2 cut(s)	242, 403
MnlI	CCTC	8 cut(s)	116, 159, 209, 225, 320, 419, 511, 738
MspA1I	CMGCKG	1 cut(s)	312
MspI	CCGG	1 cut(s)	270
MvnI	CGCG	3 cut(s)	20, 110, 223
MwoI	GCNNNNNNNGC	6 cut(s)	78, 147, 246, 263, 294, 315
NdeII	GATC	3 cut(s)	84, 211, 698
NlaIII	CATG	2 cut(s)	257, 438
NlaIV	GGNNCC	1 cut(s)	197
NmeAIII	GCCGAG	2 cut(s)	213, 368
NruI	TCGCGA	1 cut(s)	110
NspI	RCATGY	1 cut(s)	438
PceI	AGGCCT	1 cut(s)	169
PciI	ACATGT	1 cut(s)	434
PcsI	WCGNNNNNNNCGW	2 cut(s)	390, 395
PfeI	GAWTC	1 cut(s)	347
PkrI	GCNGC	7 cut(s)	152, 225, 296, 311, 314, 317, 451
PleI	GAGTC	3 cut(s)	13, 102, 120
PpsI	GAGTC	3 cut(s)	13, 102, 120
PscI	ACATGT	1 cut(s)	434
PshAI	GACNNNNGTC	1 cut(s)	404
PspN4I	GGNNCC	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	84
RruI	TCGCGA	1 cut(s)	110
SatI	GCNGC	7 cut(s)	151, 224, 295, 310, 313, 316, 450
Sau3AI	GATC	3 cut(s)	84, 211, 698
SchI	GAGTC	3 cut(s)	14, 103, 121
SduI	GDGCHC	2 cut(s)	26, 767
SetI	ASST	8 cut(s)	127, 331, 363, 387, 489, 522, 555, 651
Sse9I	AATT	6 cut(s)	465, 525, 607, 619, 708, 750
SseBI	AGGCCT	1 cut(s)	169
SsiI	CCGC	7 cut(s)	70, 150, 223, 273, 294, 312, 315
SspMI	CTAG	2 cut(s)	470, 498
StuI	AGGCCT	1 cut(s)	169
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	52, 341
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	5 cut(s)	29, 115, 182, 398, 417
TasI	AATT	6 cut(s)	465, 525, 607, 619, 708, 750
TauI	GCSGC	5 cut(s)	153, 226, 297, 315, 318
TfiI	GAWTC	1 cut(s)	347
TscAI	CASTG	1 cut(s)	18
TseI	GCWGC	2 cut(s)	309, 449
TspDTI	ATGAA	2 cut(s)	146, 168
TspRI	CASTG	1 cut(s)	18
XapI	RAATTY	1 cut(s)	465
XbaI	TCTAGA	1 cut(s)	469
XceI	RCATGY	1 cut(s)	438
XspI	CTAG	2 cut(s)	470, 498
ZraI	GACGTC	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.