Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008802

Physical Location & Seq

Genomic Coordinates Forward (+)

16263036 .. 16264226

Gene Structure 1191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G33925.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAACGTCACTCTTTTGGTCGCAGACGCCGTTTGGTCGAACATTGAATCAACCGGTTCAGTAACCGAAGAACAGCTCTCAATCTTGCAGCTGTTGTTTGGTAAGAATCTTGAGAAAGCCACCAGAATAATCGACAAGAGAGGCGTCAAGAAAATATCTGGCTTACCCAGTGGAAGATCCATCTTTCAGGTTGTGGGGGAATCTCAGAAGAGAGAAGAGTATCTCTGCTTCCCAGGAGATTACTGTGGATGTTATTCTTTCTTCTATGATGTTGTAAGCAGAGGAGAGCACCAATGTTGTAAACATCAATTGGCTGCGAGGTTGGCTTCTTCTTTGGGTACATACAACGAAATCGAGGTTTCTGATGACCATCTTGCCTTGATGCTCTCAAAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

14.7

Weight (kDa)

5.9

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33925 AT4G33925
fragaria_vesca	FvH4_2g04570
malus_domestica	MD00G1205200.v1.1 MD10G1101800.v1.1
prunus_persica	Prupe.8G139500_v2.0.a1 Prupe.8G139500_v2.0.a1 Prupe.8G139500_v2.0.a1 Prupe.8G139500_v2.0.a1
pyrus_communis	pycom10g08720
rosa_chinensis	RchiOBHm_Chr6g0254151
rosa_laevigata	RLG00000014939
rosa_multiflora	Rmu_sc0000010.1_g000027 Rmu_sc0003711.1_g000002
rosa_roxburghii	Rroxscaffold_7G00211120
rosa_rugosa	Rorug05G0550100 Rorug05G0550200
rosa_samantha	Rh6AG066600 Rh6BG059700 Rh6CG059400 Rh6DG056300 Rh6DG056600
rosa_wichuraiana	Rw6G005850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	171
AcyI	GRCGYC	2 cut(s)	27, 144
AfaI	GTAC	1 cut(s)	340
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	47
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	2 cut(s)	76, 91
AluI	AGCT	2 cut(s)	76, 91
Alw21I	GWGCWC	1 cut(s)	291
AlwI	GGATC	1 cut(s)	171
ApeKI	GCWGC	2 cut(s)	88, 314
AsiGI	ACCGGT	1 cut(s)	53
BarI	GAAGNNNNNNTAC	2 cut(s)	212, 244
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	100, 301
BccI	CCATC	2 cut(s)	188, 378
BceAI	ACGGC	1 cut(s)	14
BciT130I	CCWGG	1 cut(s)	234
BglII	AGATCT	1 cut(s)	393
BisI	GCNGC	2 cut(s)	89, 315
BlsI	GCNGC	2 cut(s)	90, 316
Bme1390I	CCNGG	1 cut(s)	234
BmrFI	CCNGG	1 cut(s)	234
BmrI	ACTGGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	372
BmuI	ACTGGG	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	369
BsaHI	GRCGYC	2 cut(s)	27, 144
BsaJI	CCNNGG	1 cut(s)	232
BsaWI	WCCGGW	1 cut(s)	53
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	168
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	1 cut(s)	254
BseJI	GATNNNNATC	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	297
BseXI	GCAGC	2 cut(s)	100, 301
BshTI	ACCGGT	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	176, 393
BspCNI	CTCAG	1 cut(s)	217
BspPI	GGATC	1 cut(s)	171
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	168
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	2 cut(s)	176, 393
BssNI	GRCGYC	2 cut(s)	27, 144
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	245
Bst6I	CTCTTC	2 cut(s)	203, 210
BstACI	GRCGYC	2 cut(s)	27, 144
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	254
BstKTI	GATC	2 cut(s)	179, 396
BstMBI	GATC	2 cut(s)	176, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	232
BstV1I	GCAGC	2 cut(s)	100, 301
BstX2I	RGATCY	2 cut(s)	176, 393
BstYI	RGATCY	2 cut(s)	176, 393
BtsCI	GGATG	1 cut(s)	254
BtsIMutI	CAGTG	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	53
CseI	GACGC	2 cut(s)	35, 133
Csp6I	GTAC	1 cut(s)	339
CspAI	ACCGGT	1 cut(s)	53
CviJI	RGCY	6 cut(s)	76, 91, 119, 162, 314, 326
CviKI_1	RGCY	6 cut(s)	76, 91, 119, 162, 314, 326
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	2 cut(s)	178, 395
DpnII	GATC	2 cut(s)	176, 393
Eam1104I	CTCTTC	2 cut(s)	203, 210
EarI	CTCTTC	2 cut(s)	203, 210
EcoRII	CCWGG	1 cut(s)	232
FaiI	YATR	2 cut(s)	267, 343
Fnu4HI	GCNGC	2 cut(s)	89, 315
FokI	GGATG	1 cut(s)	261
Fsp4HI	GCNGC	2 cut(s)	89, 315
GluI	GCNGC	2 cut(s)	89, 315
HapII	CCGG	1 cut(s)	54
HgaI	GACGC	2 cut(s)	35, 133
Hin1I	GRCGYC	2 cut(s)	27, 144
HinfI	GANTC	3 cut(s)	47, 106, 200
HpaII	CCGG	1 cut(s)	54
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	3 cut(s)	207, 364, 398
Hpy188III	TCNNGA	2 cut(s)	110, 148
Hpy8I	GTNNAC	1 cut(s)	302
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	1 cut(s)	6
Hsp92I	GRCGYC	2 cut(s)	27, 144
Kzo9I	GATC	2 cut(s)	176, 393
LpnPI	CCDG	7 cut(s)	67, 136, 144, 173, 181, 219, 246
Lsp1109I	GCAGC	2 cut(s)	100, 301
LweI	GCATC	1 cut(s)	372
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	2 cut(s)	7, 61
MalI	GATC	2 cut(s)	178, 395
MboI	GATC	2 cut(s)	176, 393
MboII	GAAGA	6 cut(s)	80, 186, 220, 227, 253, 321
MfeI	CAATTG	1 cut(s)	308
MflI	RGATCY	2 cut(s)	176, 393
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	1 cut(s)	308
MnlI	CCTC	4 cut(s)	134, 275, 312, 349
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	234
MunI	CAATTG	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	323
NdeII	GATC	2 cut(s)	176, 393
NmuCI	GTSAC	1 cut(s)	7
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PfeI	GAWTC	3 cut(s)	47, 106, 200
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	90, 316
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PsuI	RGATCY	2 cut(s)	176, 393
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
SatI	GCNGC	2 cut(s)	89, 315
Sau3AI	GATC	2 cut(s)	176, 393
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	6 cut(s)	9, 78, 93, 192, 323, 360
SfaNI	GCATC	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	245
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	3 cut(s)	38, 132, 354
TasI	AATT	1 cut(s)	308
TfiI	GAWTC	3 cut(s)	47, 106, 200
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	2 cut(s)	88, 314
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.