Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008802

Physical Location & Seq

Genomic Coordinates Forward (+)

3512380 .. 3514019

Gene Structure 1640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAGTGCAAGTGGTTTGGTTGCAGAGGCAGTCTGGAAGGCCATTGAATCGGCTGGCTCAGTGACCCATGAACAGCTCTCTATGTTGCATTTCCTGTTTGGTAAGAACTTGGAGCGAGCAACTAGGATAATGGATCAAAGAGGTGTCAAGAGGATCTTTGGTGAGCCCAGTGGACGTTCTATATTTCAGGTTGTAGGAGAATCCCGGAGGAAGGAGGAATACTTCTGTTTTGCCGAACACTATTGTGCTTGTTATTCATTCTTCTATGACATTGTAAACAGAGGAGAGCAGCTTTGTTGCAAGCATCAGTTAGCGGCAAGACTTTCTGCAGCATTGGGAACATGCACTGATGAAAAGGTAGCTGATGACCAGCTAGCTCTATTGCTTTCCAATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.79

Weight (kDa)

6.41

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33925 AT4G33925
fragaria_vesca	FvH4_2g04570
malus_domestica	MD00G1205200.v1.1 MD10G1101800.v1.1
prunus_persica	Prupe.8G139500_v2.0.a1 Prupe.8G139500_v2.0.a1 Prupe.8G139500_v2.0.a1 Prupe.8G139500_v2.0.a1
pyrus_communis	pycom10g08720
rosa_chinensis	RchiOBHm_Chr6g0254151
rosa_laevigata	RLG00000014939
rosa_multiflora	Rmu_sc0000010.1_g000027 Rmu_sc0003711.1_g000002
rosa_roxburghii	Rroxscaffold_7G00211120
rosa_rugosa	Rorug05G0550100 Rorug05G0550200
rosa_samantha	Rh6AG066600 Rh6BG059700 Rh6CG059400 Rh6DG056300 Rh6DG056600
rosa_wichuraiana	Rw6G005850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	314
AclWI	GGATC	2 cut(s)	141, 161
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	1 cut(s)	47
AleI	CACNNNNGTG	1 cut(s)	243
AluBI	AGCT	5 cut(s)	76, 292, 362, 373, 377
AluI	AGCT	5 cut(s)	76, 292, 362, 373, 377
AlwI	GGATC	2 cut(s)	141, 161
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	2 cut(s)	289, 329
AsuC2I	CCSGG	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	173
AsuNHI	GCTAGC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	168
BarI	GAAGNNNNNNTAC	2 cut(s)	203, 235
BbvI	GCAGC	2 cut(s)	301, 341
BcnI	CCSGG	1 cut(s)	205
BfaI	CTAG	2 cut(s)	123, 374
BfmI	CTRYAG	1 cut(s)	327
BisI	GCNGC	3 cut(s)	290, 315, 330
BlsI	GCNGC	3 cut(s)	291, 316, 331
Bme1390I	CCNGG	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	205
BmrI	ACTGGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	313
BmtI	GCTAGC	1 cut(s)	377
BmuI	ACTGGG	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	297
BseXI	GCAGC	2 cut(s)	301, 341
BshFI	GGCC	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	211
BsnI	GGCC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	133, 153
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	71
BspMAI	CTGCAG	1 cut(s)	331
BspOI	GCTAGC	1 cut(s)	377
BspPI	GGATC	2 cut(s)	141, 161
BsrI	ACTGG	1 cut(s)	168
BssMI	GATC	2 cut(s)	133, 153
BstC8I	GCNNGC	4 cut(s)	55, 117, 302, 375
BstDEI	CTNAG	1 cut(s)	58
BstKTI	GATC	2 cut(s)	136, 156
BstMBI	GATC	2 cut(s)	133, 153
BstNSI	RCATGY	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	203
BstSFI	CTRYAG	1 cut(s)	327
BstV1I	GCAGC	2 cut(s)	301, 341
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	41
BtsIMutI	CAGTG	3 cut(s)	66, 175, 345
Cac8I	GCNNGC	4 cut(s)	55, 117, 302, 375
CviAII	CATG	2 cut(s)	68, 342
CviJI	RGCY	9 cut(s)	41, 53, 57, 76, 166, 292, 362, 373, 377
CviKI_1	RGCY	9 cut(s)	41, 53, 57, 76, 166, 292, 362, 373, 377
DdeI	CTNAG	1 cut(s)	58
DpnI	GATC	2 cut(s)	135, 155
DpnII	GATC	2 cut(s)	133, 153
Eco24I	GRGCYC	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	168
FaeI	CATG	2 cut(s)	71, 345
FaiI	YATR	6 cut(s)	69, 83, 182, 267, 343, 397
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FatI	CATG	2 cut(s)	67, 341
Fnu4HI	GCNGC	3 cut(s)	290, 315, 330
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	3 cut(s)	290, 315, 330
FspBI	CTAG	2 cut(s)	123, 374
GluI	GCNGC	3 cut(s)	290, 315, 330
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	205
Hin1II	CATG	2 cut(s)	71, 345
HinfI	GANTC	2 cut(s)	47, 200
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	2 cut(s)	173, 277
Hpy188III	TCNNGA	2 cut(s)	34, 148
Hpy8I	GTNNAC	2 cut(s)	173, 277
HpyAV	CCTTC	2 cut(s)	31, 205
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	6 cut(s)	8, 23, 88, 300, 329, 345
HpyF3I	CTNAG	1 cut(s)	58
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	2 cut(s)	71, 345
Kzo9I	GATC	2 cut(s)	133, 153
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	7 cut(s)	19, 39, 107, 173, 181, 218, 383
Lsp1109I	GCAGC	2 cut(s)	301, 341
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	2 cut(s)	123, 374
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	2 cut(s)	135, 155
MboI	GATC	2 cut(s)	133, 153
MboII	GAAGA	1 cut(s)	253
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	168
MnlI	CCTC	6 cut(s)	19, 134, 144, 201, 208, 275
MslI	CAYNNNNRTG	1 cut(s)	243
MspI	CCGG	1 cut(s)	205
MspR9I	CCNGG	1 cut(s)	205
NciI	CCSGG	1 cut(s)	205
NdeII	GATC	2 cut(s)	133, 153
NheI	GCTAGC	1 cut(s)	373
NlaIII	CATG	2 cut(s)	71, 345
NmuCI	GTSAC	1 cut(s)	61
NspI	RCATGY	1 cut(s)	345
OliI	CACNNNNGTG	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	47, 200
PfoI	TCCNGGA	1 cut(s)	203
PkrI	GCNGC	3 cut(s)	291, 316, 331
PstI	CTGCAG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	153
RseI	CAYNNNNRTG	1 cut(s)	243
SatI	GCNGC	3 cut(s)	290, 315, 330
Sau3AI	GATC	2 cut(s)	133, 153
ScrFI	CCNGG	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	9 cut(s)	78, 145, 178, 192, 294, 360, 364, 375, 379
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	327
SmiMI	CAYNNNNRTG	1 cut(s)	243
SsiI	CCGC	1 cut(s)	314
SspMI	CTAG	2 cut(s)	123, 374
StyD4I	CCNGG	1 cut(s)	203
TaiI	ACGT	1 cut(s)	178
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	2 cut(s)	47, 200
TscAI	CASTG	3 cut(s)	66, 175, 352
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	2 cut(s)	289, 329
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	3 cut(s)	84, 246, 366
TspRI	CASTG	3 cut(s)	66, 175, 352
XceI	RCATGY	1 cut(s)	345
XspI	CTAG	2 cut(s)	123, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.