Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0008802

Physical Location & Seq

Genomic Coordinates Reverse (-)

15828331 .. 15830421

Gene Structure 2091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G139500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAGTGCAAGTAGCTTGGTTGCAGAGGCAGTTTGGAAGGCCATTGAATCAACTGGTTCAGTGACCGATGATCAGCTCTCCATCTTGCATTTCTTGTTCGGCAAGAACTTGGAGAGGGCAACAAGGATAGTGGATCAAAGAGGTGTCAAGAGGGTTTTGGGTGAGCCCAGTGGACGTTCCATCTTTCAGGTCGTAGGAGAATCCCGGAGGAAGGAGGAGTACTTCTGTTTTGCTGAGCACTATTGTGCCTGTTATTCATTCTTCTATGACATTGTAAACAGAGGAGAGCAGCTTTGTTGTAAGCATCAACTAGCTGCAAGGCTTGCTTCATCATTGGGAGCATGCGTTGAAGTTAAGGTGTCTGATGAACAGTTGGCTCTACTGCTTTCTAAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.73

Weight (kDa)

6.81

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33925 AT4G33925
fragaria_vesca	FvH4_2g04570
malus_domestica	MD00G1205200.v1.1 MD10G1101800.v1.1
prunus_persica	Prupe.8G139500_v2.0.a1 Prupe.8G139500_v2.0.a1 Prupe.8G139500_v2.0.a1 Prupe.8G139500_v2.0.a1
pyrus_communis	pycom10g08720
rosa_chinensis	RchiOBHm_Chr6g0254151
rosa_laevigata	RLG00000014939
rosa_multiflora	Rmu_sc0000010.1_g000027 Rmu_sc0003711.1_g000002
rosa_roxburghii	Rroxscaffold_7G00211120
rosa_rugosa	Rorug05G0550100 Rorug05G0550200
rosa_samantha	Rh6AG066600 Rh6BG059700 Rh6CG059400 Rh6DG056300 Rh6DG056600
rosa_wichuraiana	Rw6G005850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	141
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	2 cut(s)	47, 350
AleI	CACNNNNGTG	1 cut(s)	243
AluBI	AGCT	4 cut(s)	15, 76, 292, 314
AluI	AGCT	4 cut(s)	15, 76, 292, 314
Alw21I	GWGCWC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	141
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	2 cut(s)	289, 314
AsuC2I	CCSGG	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	168
BarI	GAAGNNNNNNTAC	2 cut(s)	203, 235
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	301, 301
BccI	CCATC	2 cut(s)	89, 188
BclI	TGATCA	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	205
BfaI	CTAG	1 cut(s)	311
BisI	GCNGC	2 cut(s)	290, 315
BlpI	GCTNAGC	1 cut(s)	234
BlsI	GCNGC	2 cut(s)	291, 316
BmcAI	AGTACT	1 cut(s)	221
Bme1390I	CCNGG	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	205
BmrI	ACTGGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	313
BmuI	ACTGGG	1 cut(s)	162
Bpu1102I	GCTNAGC	1 cut(s)	234
BpuMI	CCSGG	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	2 cut(s)	58, 168
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	2 cut(s)	58, 168
BseRI	GAGGAG	2 cut(s)	230, 297
BseXI	GCAGC	2 cut(s)	301, 301
BshFI	GGCC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	240
BsiSI	CCGG	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	211
BsnI	GGCC	1 cut(s)	41
Bsp1286I	GDGCHC	2 cut(s)	168, 240
Bsp143I	GATC	2 cut(s)	70, 133
Bsp1720I	GCTNAGC	1 cut(s)	234
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	226
BspPI	GGATC	1 cut(s)	141
BsrI	ACTGG	2 cut(s)	58, 168
BssMI	GATC	2 cut(s)	70, 133
Bst4CI	ACNGT	1 cut(s)	372
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstC8I	GCNNGC	2 cut(s)	324, 343
BstDEI	CTNAG	1 cut(s)	234
BstKTI	GATC	2 cut(s)	73, 136
BstMBI	GATC	2 cut(s)	70, 133
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNSI	RCATGY	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	203
BstV1I	GCAGC	2 cut(s)	301, 301
BsuRI	GGCC	1 cut(s)	41
BtsIMutI	CAGTG	2 cut(s)	66, 175
Cac8I	GCNNGC	2 cut(s)	324, 343
Csp6I	GTAC	1 cut(s)	220
CspCI	CAANNNNNGTGG	2 cut(s)	111, 146
CviAII	CATG	1 cut(s)	342
CviJI	RGCY	8 cut(s)	15, 41, 76, 166, 292, 314, 322, 377
CviKI_1	RGCY	8 cut(s)	15, 41, 76, 166, 292, 314, 322, 377
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	2 cut(s)	72, 135
DpnII	GATC	2 cut(s)	70, 133
Eco24I	GRGCYC	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	168
FaeI	CATG	1 cut(s)	345
FaiI	YATR	2 cut(s)	267, 343
FalI	AAGNNNNNCTT	2 cut(s)	310, 342
FatI	CATG	1 cut(s)	341
FbaI	TGATCA	1 cut(s)	70
Fnu4HI	GCNGC	2 cut(s)	290, 315
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	2 cut(s)	290, 315
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	2 cut(s)	290, 315
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	205
Hin1II	CATG	1 cut(s)	345
HinfI	GANTC	2 cut(s)	47, 200
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	2 cut(s)	173, 277
Hpy188I	TCNGA	2 cut(s)	364, 398
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	2 cut(s)	173, 277
HpyAV	CCTTC	2 cut(s)	31, 205
HpyCH4III	ACNGT	1 cut(s)	372
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	4 cut(s)	8, 23, 88, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	1 cut(s)	345
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	70, 133
LmnI	GCTCC	1 cut(s)	338
LpnPI	CCDG	5 cut(s)	39, 173, 181, 218, 262
Lsp1109I	GCAGC	2 cut(s)	301, 301
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	2 cut(s)	72, 135
MboI	GATC	2 cut(s)	70, 133
MboII	GAAGA	1 cut(s)	253
MhlI	GDGCHC	2 cut(s)	168, 240
MnlI	CCTC	7 cut(s)	19, 108, 134, 144, 201, 208, 275
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	243
MspI	CCGG	1 cut(s)	205
MspR9I	CCNGG	1 cut(s)	205
MwoI	GCNNNNNNNGC	1 cut(s)	323
NciI	CCSGG	1 cut(s)	205
NdeII	GATC	2 cut(s)	70, 133
NlaIII	CATG	1 cut(s)	345
NmuCI	GTSAC	1 cut(s)	61
NspI	RCATGY	1 cut(s)	345
OliI	CACNNNNGTG	1 cut(s)	243
PaeI	GCATGC	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	47, 200
PfoI	TCCNGGA	1 cut(s)	203
PkrI	GCNGC	2 cut(s)	291, 316
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	2 cut(s)	290, 315
Sau3AI	GATC	2 cut(s)	70, 133
ScaI	AGTACT	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	205
SduI	GDGCHC	2 cut(s)	168, 240
SetI	ASST	8 cut(s)	17, 78, 145, 178, 192, 294, 316, 360
SfaNI	GCATC	1 cut(s)	313
SmiMI	CAYNNNNRTG	1 cut(s)	243
SphI	GCATGC	1 cut(s)	345
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	203
TaaI	ACNGT	1 cut(s)	372
TaiI	ACGT	1 cut(s)	178
TaqII	GACCGA	1 cut(s)	80
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	2 cut(s)	47, 200
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	2 cut(s)	66, 175
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	2 cut(s)	289, 314
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	3 cut(s)	246, 318, 381
TspRI	CASTG	2 cut(s)	66, 175
XceI	RCATGY	1 cut(s)	345
XspI	CTAG	1 cut(s)	311
ZrmI	AGTACT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.