AT4G36210

Transmembrane and coiled-coil domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
17130246 .. 17134656
4411 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G36210.2

Sequence Viewer

Length: 1653 bp
ATGGTGGAGCAAGAGATGGCCTTAGCTAAAGCTGCTGATGCTATGGTGCATAGCATTCAATGCTCTGTATCTATAGATGCTAAGAAGGAGAAGCATCAAGAATACGAAAACGAATGCCGTGAGAAATATGCTGTTCCTGAGGTAAAATCAAAAGATGTTGATTTGGATAAAGAGAAGGATAAGAAGGAAGCGGCTGAAAGTGCTGCAAGAGAAGGTCTTGAAGCGGGTGTGGTTATTATAGATGGAAGCCACAAGCCTGAAGTTCTTGAAAATGAGAAGTCTGTTGAGGAAGTAACATTGCTTAGTCATCAGAGGAAGATAAATGTTCTTTATGAGCTACTTTCTGCTTGCTTGTCAGATAAACATCACGAGGATAAGAAATGTAAACGGTGTAGAAAAGGCTATGATGCGCGTCACCGTGTTGCTCTCCGTTTACTTGCGACCTGGTTTAACATTGAGTGGATTAAAGTGGAAGCAATTGAGACAATGGTCGCATGCTCTGCCATGGCCATTCAGAAGTCTGCTGAAATGAAGGGTGAAGATAATCTAACTCCTACGACTTCATGGGCTAAGTGGAAGCGAGGAGGCATCATTGGTGCCGCTGCTATTACAGGAGGCACTTTGATGGCCATAACTGGTGGATTGGCTGCTCCAGCTATAGCTGCAGGATTTGGTGCATTGGCACCAACACTGGGCACAATTATTCCGGTGATTGGAGCTGGGGGTTTTGCTGCTGCGGCTAGTGCCGCAGGAACTGTTGCTGGCTCCGTTGCGGTTGCAGCATCGTTTGGAGCTGCTGGAGCTGGTCTCACAGGGACTAAGATGGCAAGGAGAATTGGGGACCTTGATGAGTTCGAATTTAAAGCTATTGGCGAAAATCATAATCAAGGACGGTTAGCAGTGGAAGTCTTGGTTGCTGGTGTTGTTTTTGAAGAAGAAGATTTTGTGAAACCATGGGAAGGGTTAACTAGTAATCTGGAGAGGTACACGCTGCAATGGGAGTCCAAGAATCTTATCTTAGTGAGCACAGCGATTCAGGATTGGCTTACTTCAAGACTTGCAATGGAATTGATGAAACAGGGAGCAATGCACACTGTGTTGGCCTCTCTTTTAATGGCATTGGCATGGCCAGCGACAATCTTAGTAGCTGCTGATTTCATAGATAGCAAATGGAGTATTGCTATTGACAGGTCGGATAAAGCAGGAAGACTTCTAGCTGAAGTGCTACAAAAAGGCTTGCAAGGAAATAGACCCATCACTCTAGTTGGTTTTTCGCTTGGTGCTCGTGTCATCTTCAAATGCCTCCAAGCTCTGGCTGAGACAGAACAAAACGCTGAACTTGTGGAGAGAGTTGTTCTTCTTGGAGCACCCATTTCAATCAATAGTGAAAACTGGCGAGACGTAAGGAAGATGGTCGCTGGAAGATTCATCAATGTTTATGCCACAAATGATTGGACCCTTGGTATCGCATTTCGTGCTAGTTTAATTTCCCAAGGATTAGCCGGAATCCAACCAATATGTATCCCTGGTATCGAAAACGTGGATGTAACCGATATGGTGGAAGGTCACTCTTCATATCTATGGAAAACTCAGCAGATTTTAGAAAGACTCGAGATCGACACATATTACCCTGTTTTTCGAGACACTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

550

Amino Acids

59.77

Weight (kDa)

5.58

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF726 PF05277 191 - 417 1.8e-47 Protein of unknown function (DUF726)
DUF726 PF05277 437 - 505 9.4e-17 Protein of unknown function (DUF726)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 596, 682
AccB7I CCANNNNNTGG 1 cut(s) 1312
AccII CGCG 1 cut(s) 412
AciI CCGC 6 cut(s) 191, 224, 600, 737, 747, 773
AcoI YGGCCR 3 cut(s) 507, 627, 1127
AcsI RAATTY 1 cut(s) 857
AcuI CTGAAG 2 cut(s) 279, 1239
AdeI CACNNNGTG 1 cut(s) 1096
AfaI GTAC 1 cut(s) 986
AfiI CCNNNNNNNGG 4 cut(s) 692, 713, 959, 1312
AgsI TTSAA 7 cut(s) 59, 221, 269, 932, 1053, 1297, 1377
AhlI ACTAGT 1 cut(s) 968
AjnI CCWGG 2 cut(s) 443, 1525
Alw21I GWGCWC 3 cut(s) 1028, 1285, 1369
Alw26I GTCTC 5 cut(s) 476, 812, 1313, 1392, 1635
AlwNI CAGNNNCTG 1 cut(s) 755
Ama87I CYCGRG 1 cut(s) 1610
AoxI GGCC 5 cut(s) 18, 507, 627, 1101, 1127
ApoI RAATTY 1 cut(s) 857
AspLEI GCGC 1 cut(s) 412
AspS9I GGNCC 2 cut(s) 841, 1455
AsuHPI GGTGA 3 cut(s) 407, 548, 721
AsuII TTCGAA 1 cut(s) 855
AvaI CYCGRG 1 cut(s) 1610
AvaII GGWCC 2 cut(s) 841, 1455
AxyI CCTNAGG 1 cut(s) 138
BaeGI GKGCMC 1 cut(s) 698
BalI TGGCCA 3 cut(s) 509, 629, 1129
BanI GGYRCC 2 cut(s) 596, 682
BauI CACGAG 2 cut(s) 368, 1284
BbsI GAAGAC 1 cut(s) 1213
Bbv12I GWGCWC 3 cut(s) 1028, 1285, 1369
BccI CCATC 6 cut(s) 10, 236, 619, 817, 1262, 1405
BceAI ACGGC 1 cut(s) 102
BciT130I CCWGG 2 cut(s) 445, 1527
BciVI GTATCC 1 cut(s) 1532
BcoDI GTCTC 5 cut(s) 476, 812, 1313, 1392, 1635
BcuI ACTAGT 1 cut(s) 968
BfaI CTAG 5 cut(s) 741, 969, 1214, 1262, 1479
BfmI CTRYAG 3 cut(s) 72, 657, 663
BfuI GTATCC 1 cut(s) 1532
Bme1390I CCNGG 2 cut(s) 445, 1527
Bme18I GGWCC 2 cut(s) 841, 1455
BmeT110I CYCGRG 1 cut(s) 1610
BmgT120I GGNCC 2 cut(s) 841, 1455
BmiI GGNNCC 5 cut(s) 598, 684, 766, 842, 1457
BmrFI CCNGG 2 cut(s) 445, 1527
BmrI ACTGGG 1 cut(s) 701
BmsI GCATC 6 cut(s) 28, 67, 103, 397, 597, 791
BmuI ACTGGG 1 cut(s) 701
BoxI GACNNNNGTC 1 cut(s) 488
BpiI GAAGAC 1 cut(s) 1213
BplI GAGNNNNNCTC 2 cut(s) 792, 824
BpmI CTGGAG 3 cut(s) 636, 819, 998
Bpu10I CCTNAGC 1 cut(s) 22
Bpu14I TTCGAA 1 cut(s) 855
BsaBI GATNNNNATC 1 cut(s) 363
BsaI GGTCTC 1 cut(s) 812
BsaJI CCNNGG 5 cut(s) 504, 953, 1459, 1492, 1525
BsaWI WCCGGW 1 cut(s) 706
Bsc4I CCNNNNNNNGG 4 cut(s) 692, 713, 959, 1312
Bse1I ACTGG 3 cut(s) 640, 696, 1397
Bse21I CCTNAGG 1 cut(s) 138
Bse3DI GCAATG 4 cut(s) 296, 1001, 1068, 1092
Bse8I GATNNNNATC 1 cut(s) 363
BseBI CCWGG 2 cut(s) 445, 1527
BseDI CCNNGG 5 cut(s) 504, 953, 1459, 1492, 1525
BseGI GGATG 1 cut(s) 1549
BseJI GATNNNNATC 1 cut(s) 363
BseLI CCNNNNNNNGG 4 cut(s) 692, 713, 959, 1312
BseMI GCAATG 4 cut(s) 296, 1001, 1068, 1092
BseMII CTCAG 3 cut(s) 129, 1308, 1604
BseNI ACTGG 3 cut(s) 640, 696, 1397
BseRI GAGGAG 1 cut(s) 597
BseSI GKGCMC 1 cut(s) 698
BseYI CCCAGC 1 cut(s) 719
Bsh1236I CGCG 1 cut(s) 412
BshFI GGCC 5 cut(s) 20, 509, 629, 1103, 1129
BshNI GGYRCC 2 cut(s) 596, 682
BsiHKAI GWGCWC 3 cut(s) 1028, 1285, 1369
BsiHKCI CYCGRG 1 cut(s) 1610
BsiSI CCGG 2 cut(s) 707, 1503
BslFI GGGAC 2 cut(s) 829, 854
BslI CCNNNNNNNGG 4 cut(s) 692, 713, 959, 1312
BsmAI GTCTC 5 cut(s) 476, 812, 1313, 1392, 1635
BsmBI CGTCTC 1 cut(s) 1392
BsmFI GGGAC 2 cut(s) 829, 854
BsmI GAATGC 2 cut(s) 54, 119
BsnI GGCC 5 cut(s) 20, 509, 629, 1103, 1129
Bso31I GGTCTC 1 cut(s) 812
BsoBI CYCGRG 1 cut(s) 1610
Bsp119I TTCGAA 1 cut(s) 855
Bsp1286I GDGCHC 4 cut(s) 698, 1028, 1285, 1369
Bsp143I GATC 1 cut(s) 1614
Bsp19I CCATGG 2 cut(s) 504, 953
BspACI CCGC 6 cut(s) 191, 224, 600, 737, 747, 773
BspANI GGCC 5 cut(s) 20, 509, 629, 1103, 1129
BspCNI CTCAG 3 cut(s) 130, 1309, 1603
BspFNI CGCG 1 cut(s) 412
BspLI GGNNCC 5 cut(s) 598, 684, 766, 842, 1457
BspMAI CTGCAG 1 cut(s) 667
BspT104I TTCGAA 1 cut(s) 855
BspT107I GGYRCC 2 cut(s) 596, 682
BspTNI GGTCTC 1 cut(s) 812
BsrDI GCAATG 4 cut(s) 296, 1001, 1068, 1092
BsrI ACTGG 3 cut(s) 640, 696, 1397
BssECI CCNNGG 5 cut(s) 504, 953, 1459, 1492, 1525
BssMI GATC 1 cut(s) 1614
BssSI CACGAG 2 cut(s) 368, 1284
BssT1I CCWWGG 4 cut(s) 504, 953, 1459, 1492
Bst2BI CACGAG 2 cut(s) 368, 1284
Bst2UI CCWGG 2 cut(s) 445, 1527
Bst4CI ACNGT 5 cut(s) 390, 419, 757, 894, 1096
Bst6I CTCTTC 1 cut(s) 1576
BstAPI GCANNNNNTGC 3 cut(s) 60, 500, 1475
BstBI TTCGAA 1 cut(s) 855
BstC8I GCNNGC 5 cut(s) 349, 496, 763, 1131, 1238
BstDSI CCRYGG 2 cut(s) 504, 953
BstF5I GGATG 1 cut(s) 1549
BstFNI CGCG 1 cut(s) 412
BstHHI GCGC 1 cut(s) 412
BstKTI GATC 1 cut(s) 1617
BstMAI GTCTC 5 cut(s) 476, 812, 1313, 1392, 1635
BstMBI GATC 1 cut(s) 1614
BstNI CCWGG 2 cut(s) 445, 1527
BstNSI RCATGY 1 cut(s) 498
BstPAI GACNNNNGTC 1 cut(s) 488
BstSCI CCNGG 2 cut(s) 443, 1525
BstSFI CTRYAG 3 cut(s) 72, 657, 663
BstSLI GKGCMC 1 cut(s) 698
BstUI CGCG 1 cut(s) 412
BstV2I GAAGAC 1 cut(s) 1213
Bsu36I CCTNAGG 1 cut(s) 138
BsuI GTATCC 1 cut(s) 1532
BsuRI GGCC 5 cut(s) 20, 509, 629, 1103, 1129
BtgI CCRYGG 2 cut(s) 504, 953
BtsCI GGATG 1 cut(s) 1549
BtsI GCAGTG 1 cut(s) 906
BtsIMutI CAGTG 3 cut(s) 689, 906, 1092
Cac8I GCNNGC 5 cut(s) 349, 496, 763, 1131, 1238
CaiI CAGNNNCTG 1 cut(s) 755
CfoI GCGC 1 cut(s) 412
Cfr13I GGNCC 2 cut(s) 841, 1455
CseI GACGC 1 cut(s) 401
CsiI ACCWGGT 1 cut(s) 443
Csp6I GTAC 1 cut(s) 985
CviAII CATG 5 cut(s) 495, 505, 564, 954, 1125
CviQI GTAC 1 cut(s) 985
DpnI GATC 1 cut(s) 1616
DpnII GATC 1 cut(s) 1614
DraI TTTAAA 1 cut(s) 862
DraIII CACNNNGTG 1 cut(s) 1096
EaeI YGGCCR 3 cut(s) 507, 627, 1127
Eam1104I CTCTTC 1 cut(s) 1576
EarI CTCTTC 1 cut(s) 1576
Eco130I CCWWGG 4 cut(s) 504, 953, 1459, 1492
Eco31I GGTCTC 1 cut(s) 812
Eco47I GGWCC 2 cut(s) 841, 1455
Eco57I CTGAAG 2 cut(s) 279, 1239
Eco81I CCTNAGG 1 cut(s) 138
Eco88I CYCGRG 1 cut(s) 1610
EcoO109I RGGNCCY 1 cut(s) 841
EcoRII CCWGG 2 cut(s) 443, 1525
EcoT14I CCWWGG 4 cut(s) 504, 953, 1459, 1492
ErhI CCWWGG 4 cut(s) 504, 953, 1459, 1492
Esp3I CGTCTC 1 cut(s) 1392
FaeI CATG 5 cut(s) 498, 508, 567, 957, 1128
FaqI GGGAC 2 cut(s) 829, 854
FatI CATG 5 cut(s) 494, 504, 563, 953, 1124
FauI CCCGC 1 cut(s) 217
FokI GGATG 1 cut(s) 1556
FspBI CTAG 5 cut(s) 741, 969, 1214, 1262, 1479
GlaI GCGC 1 cut(s) 411
GsaI CCCAGC 1 cut(s) 723
GsuI CTGGAG 3 cut(s) 636, 819, 998
HaeIII GGCC 5 cut(s) 20, 509, 629, 1103, 1129
HapII CCGG 2 cut(s) 707, 1503
HgaI GACGC 1 cut(s) 401
HhaI GCGC 1 cut(s) 412
Hin1II CATG 5 cut(s) 498, 508, 567, 957, 1128
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HincII GTYRAC 1 cut(s) 966
HindII GTYRAC 1 cut(s) 966
HinfI GANTC 6 cut(s) 1001, 1009, 1033, 1425, 1506, 1608
HpaI GTTAAC 1 cut(s) 966
HpaII CCGG 2 cut(s) 707, 1503
HphI GGTGA 3 cut(s) 407, 548, 721
Hpy166II GTNNAC 4 cut(s) 386, 434, 966, 987
Hpy188I TCNGA 4 cut(s) 312, 358, 516, 1195
Hpy8I GTNNAC 4 cut(s) 386, 434, 966, 987
HpyAV CCTTC 7 cut(s) 79, 169, 178, 206, 526, 953, 1556
HpyCH4III ACNGT 5 cut(s) 390, 419, 757, 894, 1096
HpyCH4IV ACGT 2 cut(s) 1401, 1539
HpyCH4V TGCA 9 cut(s) 49, 206, 665, 677, 779, 994, 1061, 1090, 1240
HpySE526I ACGT 2 cut(s) 1401, 1539
Hsp92II CATG 5 cut(s) 498, 508, 567, 957, 1128
HspAI GCGC 1 cut(s) 410
KspAI GTTAAC 1 cut(s) 966
Kzo9I GATC 1 cut(s) 1614
LmnI GCTCC 8 cut(s) 7, 655, 716, 770, 791, 800, 1082, 1364
LweI GCATC 6 cut(s) 28, 67, 103, 397, 597, 791
MabI ACCWGGT 1 cut(s) 443
MaeI CTAG 5 cut(s) 741, 969, 1214, 1262, 1479
MaeII ACGT 2 cut(s) 1401, 1539
MaeIII GTNAC 4 cut(s) 292, 413, 1546, 1565
MalI GATC 1 cut(s) 1616
MboI GATC 1 cut(s) 1614
MfeI CAATTG 1 cut(s) 477
MhlI GDGCHC 4 cut(s) 698, 1028, 1285, 1369
MlsI TGGCCA 3 cut(s) 509, 629, 1129
MluCI AATT 6 cut(s) 477, 699, 834, 857, 1067, 1485
MluNI TGGCCA 3 cut(s) 509, 629, 1129
MlyI GAGTC 2 cut(s) 1010, 1602
MmeI TCCRAC 2 cut(s) 1173, 1534
Mox20I TGGCCA 3 cut(s) 509, 629, 1129
MscI TGGCCA 3 cut(s) 509, 629, 1129
MseI TTAA 7 cut(s) 450, 465, 861, 965, 1112, 1484, 1651
MslI CAYNNNNRTG 3 cut(s) 623, 1123, 1579
Msp20I TGGCCA 3 cut(s) 509, 629, 1129
MspA1I CMGCKG 1 cut(s) 602
MspI CCGG 2 cut(s) 707, 1503
MspR9I CCNGG 2 cut(s) 445, 1527
MunI CAATTG 1 cut(s) 477
Mva1269I GAATGC 2 cut(s) 54, 119
MvaI CCWGG 2 cut(s) 445, 1527
MvnI CGCG 1 cut(s) 412
NcoI CCATGG 2 cut(s) 504, 953
NdeII GATC 1 cut(s) 1614
NlaIII CATG 5 cut(s) 498, 508, 567, 957, 1128
NlaIV GGNNCC 5 cut(s) 598, 684, 766, 842, 1457
NmuCI GTSAC 2 cut(s) 413, 1565
NspI RCATGY 1 cut(s) 498
NspV TTCGAA 1 cut(s) 855
PaeI GCATGC 1 cut(s) 498
PaeR7I CTCGAG 1 cut(s) 1610
PctI GAATGC 2 cut(s) 54, 119
PfeI GAWTC 4 cut(s) 1009, 1033, 1425, 1506
PflMI CCANNNNNTGG 1 cut(s) 1312
PleI GAGTC 2 cut(s) 1009, 1602
PpsI GAGTC 2 cut(s) 1009, 1602
PpuMI RGGWCCY 1 cut(s) 841
PshAI GACNNNNGTC 1 cut(s) 488
Psp5II RGGWCCY 1 cut(s) 841
Psp6I CCWGG 2 cut(s) 443, 1525
PspFI CCCAGC 1 cut(s) 719
PspGI CCWGG 2 cut(s) 443, 1525
PspN4I GGNNCC 5 cut(s) 598, 684, 766, 842, 1457
PspPI GGNCC 2 cut(s) 841, 1455
PspPPI RGGWCCY 1 cut(s) 841
PstI CTGCAG 1 cut(s) 667
PstNI CAGNNNCTG 1 cut(s) 755
RsaI GTAC 1 cut(s) 986
RsaNI GTAC 1 cut(s) 985
RseI CAYNNNNRTG 3 cut(s) 623, 1123, 1579
SaqAI TTAA 7 cut(s) 450, 465, 861, 965, 1112, 1484, 1651
Sau3AI GATC 1 cut(s) 1614
Sau96I GGNCC 2 cut(s) 841, 1455
SchI GAGTC 2 cut(s) 1010, 1602
ScrFI CCNGG 2 cut(s) 445, 1527
SduI GDGCHC 4 cut(s) 698, 1028, 1285, 1369
SexAI ACCWGGT 1 cut(s) 443
SfaNI GCATC 6 cut(s) 28, 67, 103, 397, 597, 791
SfcI CTRYAG 3 cut(s) 72, 657, 663
Sfr274I CTCGAG 1 cut(s) 1610
SfuI TTCGAA 1 cut(s) 855
SinI GGWCC 2 cut(s) 841, 1455
SlaI CTCGAG 1 cut(s) 1610
SmiMI CAYNNNNRTG 3 cut(s) 623, 1123, 1579
SmlI CTYRAG 1 cut(s) 1610
SmoI CTYRAG 1 cut(s) 1610
SpeI ACTAGT 1 cut(s) 968
SphI GCATGC 1 cut(s) 498
Sse9I AATT 6 cut(s) 477, 699, 834, 857, 1067, 1485
SsiI CCGC 6 cut(s) 191, 224, 600, 737, 747, 773
SspMI CTAG 5 cut(s) 741, 969, 1214, 1262, 1479
StyD4I CCNGG 2 cut(s) 443, 1525
StyI CCWWGG 4 cut(s) 504, 953, 1459, 1492
TaaI ACNGT 5 cut(s) 390, 419, 757, 894, 1096
TaiI ACGT 2 cut(s) 1404, 1542
TaqI TCGA 5 cut(s) 855, 1533, 1611, 1617, 1639
TasI AATT 6 cut(s) 477, 699, 834, 857, 1067, 1485
TauI GCSGC 4 cut(s) 194, 602, 740, 749
TfiI GAWTC 4 cut(s) 1009, 1033, 1425, 1506
Tru1I TTAA 7 cut(s) 450, 465, 861, 965, 1112, 1484, 1651
Tru9I TTAA 7 cut(s) 450, 465, 861, 965, 1112, 1484, 1651
TscAI CASTG 3 cut(s) 696, 906, 1099
TseFI GTSAC 2 cut(s) 413, 1565
Tsp45I GTSAC 2 cut(s) 413, 1565
TspDTI ATGAA 6 cut(s) 545, 552, 1088, 1147, 1417, 1563
TspGWI ACGGA 2 cut(s) 419, 757
TspRI CASTG 3 cut(s) 696, 906, 1099
Van91I CCANNNNNTGG 1 cut(s) 1312
VpaK11BI GGWCC 2 cut(s) 841, 1455
XapI RAATTY 1 cut(s) 857
XceI RCATGY 1 cut(s) 498
XhoI CTCGAG 1 cut(s) 1610
XspI CTAG 5 cut(s) 741, 969, 1214, 1262, 1479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.