Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030968.1

Orthogroup ID

OG0008389

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2097

Gene Structure 2097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030968.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 943 bp

acgatcacagaactcgtatgaattgaaattccgactcatgtccacgacgacgtcgttcttaacgccgacgcagcggtacggcgccggagctttgttcgcgttcgctctccaccaggctcagatccaccagactcgccccttggggttgcttactcacgaagactcaaccgccgccgaccgagccagtagctgcagcagttccgactccgtctccgatgacccgttgctttgggtcaatgaaaactccggcctccttccacccgtgtttaggtttctagagattgatcctgcagcatggtctggacttcaagaaactgctgctgcttctccggctagcaatcatgttggagcattcttgaggttgctggcagaagaaggtgatggcaaaaatgcttcggaaaattcagatcaagaacttgctttgtcaagagctgttgatgctatggcgcgtagcatggaacaggattccgagtcttccaaatctaagagggaaaaacatattgaatacgaacatgaatgccgtgagaaattatccacaccggaggtgaagcaaaatgctgaagcagcggatgcgcctttggaaaattcgcaggacaaaagcgtcacagccgaggtgcaacagatcgttcaagcagcggaggtgcctttggaaaatcagcgagagattcgtggtactatggttaatgttaaagagacagttgataagtccaagagtgacattgatgagcaacctgttgtggaggcaagaatgctcagtaatgagaggaaaattacagttatgtatgagattctttctgcttgtctggctgataggcgtgaagacaacaaaaagtctacccgtcggagaaagggttatgatgctcggcatcgtgtagctttgcgcttactagcaacttggcttgatgtcaagtggatacaaatggtatgtatgctcaaccaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF726

Protein Analysis

313

Amino Acids

35.02

Weight (kDa)

5.43

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18100 AT2G18100 AT2G18100 AT2G18100 AT4G36210 AT4G36210 AT4G36210
fragaria_vesca	FvH4_1g12180 FvH4_1g12180
malus_domestica	MD15G1249300.v1.1
prunus_persica	Prupe.7G164900_v2.0.a1
pyrus_communis	pycom15g21950
rosa_chinensis	RchiOBHm_Chr2g0099941
rosa_laevigata	RLG00000016924
rosa_multiflora	Rmu_sc0018695.1_g000001 Rmu_sc0030968.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142720
rosa_rugosa	Rorug02G0084200
rosa_samantha	Rh2AG133100 Rh2BG136600 Rh2CG138200 Rh2DG138600
rosa_wichuraiana	Rw2G010360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	600
AatII	GACGTC	1 cut(s)	54
AccB1I	GGYRCC	2 cut(s)	81, 641
AccI	GTMKAC	1 cut(s)	834
AccII	CGCG	2 cut(s)	99, 449
AciI	CCGC	5 cut(s)	74, 169, 172, 567, 636
AclWI	GGATC	2 cut(s)	116, 279
AcsI	RAATTY	3 cut(s)	27, 401, 584
AcuI	CTGAAG	1 cut(s)	580
AcyI	GRCGYC	2 cut(s)	51, 82
AfaI	GTAC	2 cut(s)	78, 674
AfiI	CCNNNNNNNGG	1 cut(s)	268
AgsI	TTSAA	4 cut(s)	26, 309, 504, 630
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	4 cut(s)	90, 190, 432, 876
AluI	AGCT	4 cut(s)	90, 190, 432, 876
Alw26I	GTCTC	2 cut(s)	215, 687
AlwI	GGATC	2 cut(s)	116, 279
AlwNI	CAGNNNCTG	1 cut(s)	190
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	8 cut(s)	71, 190, 193, 291, 318, 321, 564, 633
ApoI	RAATTY	3 cut(s)	27, 401, 584
AspLEI	GCGC	4 cut(s)	84, 449, 575, 883
AsuHPI	GGTGA	2 cut(s)	390, 557
AsuNHI	GCTAGC	1 cut(s)	333
BaeI	ACNNNNGTAYC	2 cut(s)	664, 697
BanI	GGYRCC	2 cut(s)	81, 641
BbsI	GAAGAC	3 cut(s)	166, 466, 826
BbvI	GCAGC	8 cut(s)	83, 177, 205, 303, 305, 308, 576, 645
BccI	CCATC	1 cut(s)	375
BceAI	ACGGC	2 cut(s)	95, 505
BciT130I	CCWGG	1 cut(s)	114
BciVI	GTATCC	1 cut(s)	907
BcoDI	GTCTC	2 cut(s)	215, 687
BfaI	CTAG	3 cut(s)	276, 334, 888
BfmI	CTRYAG	2 cut(s)	191, 289
BfoI	RGCGCY	1 cut(s)	85
BfuI	GTATCC	1 cut(s)	907
BisI	GCNGC	9 cut(s)	72, 172, 191, 194, 292, 319, 322, 565, 634
BlsI	GCNGC	9 cut(s)	73, 173, 192, 195, 293, 320, 323, 566, 635
Bme1390I	CCNGG	1 cut(s)	114
BmiI	GGNNCC	2 cut(s)	83, 643
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	4 cut(s)	428, 560, 848, 875
BmtI	GCTAGC	1 cut(s)	337
BoxI	GACNNNNGTC	1 cut(s)	38
BpiI	GAAGAC	3 cut(s)	166, 466, 826
BpuEI	CTTGAG	1 cut(s)	377
BsaHI	GRCGYC	2 cut(s)	51, 82
BsaJI	CCNNGG	2 cut(s)	139, 610
BsaWI	WCCGGW	1 cut(s)	539
BsaXI	ACNNNNNCTCC	4 cut(s)	195, 225, 836, 866
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	139, 610
BseGI	GGATG	1 cut(s)	575
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMII	CTCAG	2 cut(s)	132, 767
BseNI	ACTGG	1 cut(s)	184
BseXI	GCAGC	8 cut(s)	83, 177, 205, 303, 305, 308, 576, 645
Bsh1236I	CGCG	2 cut(s)	99, 449
Bsh1285I	CGRYCG	1 cut(s)	179
BshFI	GGCC	1 cut(s)	250
BshNI	GGYRCC	2 cut(s)	81, 641
BsiEI	CGRYCG	1 cut(s)	179
BsiSI	CCGG	4 cut(s)	85, 247, 330, 540
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmAI	GTCTC	2 cut(s)	215, 687
BsmBI	CGTCTC	1 cut(s)	215
BsmI	GAATGC	3 cut(s)	351, 522, 754
BsnI	GGCC	1 cut(s)	250
Bsp143I	GATC	5 cut(s)	3, 121, 284, 407, 622
BspACI	CCGC	5 cut(s)	74, 169, 172, 567, 636
BspANI	GGCC	1 cut(s)	250
BspCNI	CTCAG	2 cut(s)	131, 766
BspFNI	CGCG	2 cut(s)	99, 449
BspLI	GGNNCC	2 cut(s)	83, 643
BspMAI	CTGCAG	2 cut(s)	195, 293
BspOI	GCTAGC	1 cut(s)	337
BspPI	GGATC	2 cut(s)	116, 279
BspT107I	GGYRCC	2 cut(s)	81, 641
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	139, 610
BssMI	GATC	5 cut(s)	3, 121, 284, 407, 622
BssNI	GRCGYC	2 cut(s)	51, 82
BssT1I	CCWWGG	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	2 cut(s)	698, 776
BstACI	GRCGYC	2 cut(s)	51, 82
BstAPI	GCANNNNNTGC	1 cut(s)	570
BstC8I	GCNNGC	2 cut(s)	335, 367
BstDEI	CTNAG	3 cut(s)	118, 484, 753
BstF5I	GGATG	1 cut(s)	575
BstFNI	CGCG	2 cut(s)	99, 449
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	4 cut(s)	84, 449, 575, 883
BstKTI	GATC	5 cut(s)	6, 124, 287, 410, 625
BstMAI	GTCTC	2 cut(s)	215, 687
BstMBI	GATC	5 cut(s)	3, 121, 284, 407, 622
BstMCI	CGRYCG	1 cut(s)	179
BstMWI	GCNNNNNNNGC	8 cut(s)	71, 96, 180, 330, 438, 564, 570, 804
BstNI	CCWGG	1 cut(s)	114
BstPAI	GACNNNNGTC	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	112
BstSFI	CTRYAG	2 cut(s)	191, 289
BstUI	CGCG	2 cut(s)	99, 449
BstV1I	GCAGC	8 cut(s)	83, 177, 205, 303, 305, 308, 576, 645
BstV2I	GAAGAC	3 cut(s)	166, 466, 826
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuI	GTATCC	1 cut(s)	907
BsuRI	GGCC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	575
Cac8I	GCNNGC	2 cut(s)	335, 367
CaiI	CAGNNNCTG	1 cut(s)	190
CfoI	GCGC	4 cut(s)	84, 449, 575, 883
CseI	GACGC	2 cut(s)	77, 590
Csp6I	GTAC	2 cut(s)	77, 673
CviAII	CATG	5 cut(s)	38, 295, 342, 455, 513
CviQI	GTAC	2 cut(s)	77, 673
DdeI	CTNAG	3 cut(s)	118, 484, 753
DinI	GGCGCC	1 cut(s)	83
DpnI	GATC	5 cut(s)	5, 123, 286, 409, 624
DpnII	GATC	5 cut(s)	3, 121, 284, 407, 622
DrdI	GACNNNNNNGTC	1 cut(s)	600
DseDI	GACNNNNNNGTC	1 cut(s)	600
Eco130I	CCWWGG	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	580
EcoRII	CCWGG	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	139
EgeI	GGCGCC	1 cut(s)	83
EheI	GGCGCC	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	139
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	5 cut(s)	41, 298, 345, 458, 516
FatI	CATG	5 cut(s)	37, 294, 341, 454, 512
FblI	GTMKAC	1 cut(s)	834
Fnu4HI	GCNGC	9 cut(s)	72, 172, 191, 194, 292, 319, 322, 565, 634
FokI	GGATG	1 cut(s)	582
Fsp4HI	GCNGC	9 cut(s)	72, 172, 191, 194, 292, 319, 322, 565, 634
FspBI	CTAG	3 cut(s)	276, 334, 888
GlaI	GCGC	4 cut(s)	83, 448, 574, 882
GluI	GCNGC	9 cut(s)	72, 172, 191, 194, 292, 319, 322, 565, 634
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	4 cut(s)	85, 247, 330, 540
HgaI	GACGC	2 cut(s)	77, 590
HhaI	GCGC	4 cut(s)	84, 449, 575, 883
Hin1I	GRCGYC	2 cut(s)	51, 82
Hin1II	CATG	5 cut(s)	41, 298, 345, 458, 516
Hin6I	GCGC	4 cut(s)	82, 447, 573, 881
HinP1I	GCGC	4 cut(s)	82, 447, 573, 881
HinfI	GANTC	8 cut(s)	34, 131, 162, 204, 465, 471, 665, 788
HpaII	CCGG	4 cut(s)	85, 247, 330, 540
HphI	GGTGA	2 cut(s)	390, 557
Hpy166II	GTNNAC	2 cut(s)	43, 835
Hpy188I	TCNGA	8 cut(s)	33, 121, 203, 215, 398, 407, 470, 844
Hpy188III	TCNNGA	7 cut(s)	156, 276, 301, 309, 356, 411, 427
Hpy8I	GTNNAC	2 cut(s)	43, 835
Hpy99I	CGWCG	5 cut(s)	50, 53, 56, 71, 844
HpyAV	CCTTC	2 cut(s)	264, 369
HpyCH4III	ACNGT	2 cut(s)	698, 776
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	3 cut(s)	193, 291, 617
HpyF10VI	GCNNNNNNNGC	8 cut(s)	71, 96, 180, 330, 438, 564, 570, 804
HpyF3I	CTNAG	3 cut(s)	118, 484, 753
HpySE526I	ACGT	1 cut(s)	51
Hsp92I	GRCGYC	2 cut(s)	51, 82
Hsp92II	CATG	5 cut(s)	41, 298, 345, 458, 516
HspAI	GCGC	4 cut(s)	82, 447, 573, 881
KasI	GGCGCC	1 cut(s)	81
Kzo9I	GATC	5 cut(s)	3, 121, 284, 407, 622
LmnI	GCTCC	2 cut(s)	87, 348
Lsp1109I	GCAGC	8 cut(s)	83, 177, 205, 303, 305, 308, 576, 645
LweI	GCATC	4 cut(s)	428, 560, 848, 875
MaeI	CTAG	3 cut(s)	276, 334, 888
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	2 cut(s)	602, 714
MalI	GATC	5 cut(s)	5, 123, 286, 409, 624
MboI	GATC	5 cut(s)	3, 121, 284, 407, 622
MboII	GAAGA	4 cut(s)	171, 384, 466, 831
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	6 cut(s)	21, 27, 401, 528, 584, 769
Mly113I	GGCGCC	1 cut(s)	82
MlyI	GAGTC	5 cut(s)	28, 125, 156, 198, 480
MmeI	TCCRAC	4 cut(s)	56, 226, 326, 822
MnlI	CCTC	8 cut(s)	261, 352, 481, 536, 605, 632, 734, 757
MseI	TTAA	3 cut(s)	60, 682, 688
MspA1I	CMGCKG	3 cut(s)	74, 567, 636
MspI	CCGG	4 cut(s)	85, 247, 330, 540
MspR9I	CCNGG	1 cut(s)	114
Mva1269I	GAATGC	3 cut(s)	351, 522, 754
MvaI	CCWGG	1 cut(s)	114
MvnI	CGCG	2 cut(s)	99, 449
MwoI	GCNNNNNNNGC	8 cut(s)	71, 96, 180, 330, 438, 564, 570, 804
NarI	GGCGCC	1 cut(s)	82
NdeII	GATC	5 cut(s)	3, 121, 284, 407, 622
NheI	GCTAGC	1 cut(s)	333
NlaIII	CATG	5 cut(s)	41, 298, 345, 458, 516
NlaIV	GGNNCC	2 cut(s)	83, 643
NmeAIII	GCCGAG	2 cut(s)	635, 842
NmuCI	GTSAC	2 cut(s)	602, 714
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	3 cut(s)	351, 522, 754
PfeI	GAWTC	3 cut(s)	465, 665, 788
PflFI	GACNNNGTC	2 cut(s)	50, 207
PkrI	GCNGC	9 cut(s)	73, 173, 192, 195, 293, 320, 323, 566, 635
PleI	GAGTC	5 cut(s)	28, 125, 156, 198, 479
PluTI	GGCGCC	1 cut(s)	85
PpsI	GAGTC	5 cut(s)	28, 125, 156, 198, 479
PshAI	GACNNNNGTC	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	2 cut(s)	83, 643
PstI	CTGCAG	2 cut(s)	195, 293
PstNI	CAGNNNCTG	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	121
PsyI	GACNNNGTC	2 cut(s)	50, 207
RsaI	GTAC	2 cut(s)	78, 674
RsaNI	GTAC	2 cut(s)	77, 673
SaqAI	TTAA	3 cut(s)	60, 682, 688
SatI	GCNGC	9 cut(s)	72, 172, 191, 194, 292, 319, 322, 565, 634
Sau3AI	GATC	5 cut(s)	3, 121, 284, 407, 622
SchI	GAGTC	5 cut(s)	28, 125, 156, 198, 480
ScrFI	CCNGG	1 cut(s)	114
SfaNI	GCATC	4 cut(s)	428, 560, 848, 875
SfcI	CTRYAG	2 cut(s)	191, 289
SfoI	GGCGCC	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	6 cut(s)	21, 27, 401, 528, 584, 769
SsiI	CCGC	5 cut(s)	74, 169, 172, 567, 636
SspDI	GGCGCC	1 cut(s)	81
SspMI	CTAG	3 cut(s)	276, 334, 888
StyD4I	CCNGG	1 cut(s)	112
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	2 cut(s)	698, 776
TaiI	ACGT	1 cut(s)	54
TaqII	GACCGA	1 cut(s)	193
TasI	AATT	6 cut(s)	21, 27, 401, 528, 584, 769
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	3 cut(s)	465, 665, 788
Tru1I	TTAA	3 cut(s)	60, 682, 688
Tru9I	TTAA	3 cut(s)	60, 682, 688
TseFI	GTSAC	2 cut(s)	602, 714
TseI	GCWGC	8 cut(s)	71, 190, 193, 291, 318, 321, 564, 633
Tsp45I	GTSAC	2 cut(s)	602, 714
TspDTI	ATGAA	3 cut(s)	34, 253, 529
TspGWI	ACGGA	1 cut(s)	197
Tth111I	GACNNNGTC	2 cut(s)	50, 207
XapI	RAATTY	3 cut(s)	27, 401, 584
XbaI	TCTAGA	1 cut(s)	275
XmiI	GTMKAC	1 cut(s)	834
XspI	CTAG	3 cut(s)	276, 334, 888
ZraI	GACGTC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.