AT4G36890

Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
17379173 .. 17382028
2856 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G36890.1

Sequence Viewer

Length: 1578 bp
ATGAAGCTCTCTGCTTTACATCAGAGTTACTTAAATCGCCGGAGTAATAGCTTCAGATCTCCGACGTCTCTTGATTCTTCCGTTGATGGCTCCGGGAAGTCTTTAATCGCTGTGTTTTGGCTTATCCTGCACTGTCTTTGTTGCTTGATTAGTCTAGTTCTCGGCTTTCGATTCTCCAGATTAGTCTTCTTCTTCCTCTTCTCTACTTCTTCAACCAATCTCTACTCTCTTCCGTTTCGTCCTGACTTACCTGTGAAACACCTCGATGTTCACACAATCGGCCGTACTCTCGATCCCGGAGCTAACGGAACGACGGTGGTGGCGACGGCGACGAAAAGCTCTCGTGTTGTTGTTGGAAGACACGGGATCCGGATCCGTCCTTGGCCGCATCCGAATCCCGTTGAGGTAATGAAAGCTCATCAGATCATTGGGAGAGTTCAAAAAGAGCAAAAGATGATCTTTGGGATGAAAAGTAGTAAGATGGTTATAGCTGTGACACCGACTTATGTGAGGACTTTTCAAGCTTTGCATTTGACTGGTGTGATGCATTCTTTGATGCTTGTTCCTTATGATCTGGTTTGGATCGTTGTTGAAGCTGGTGGTGCTACTAATGAGACCGGTTTGATTATTGCAAAATCAGGACTTAGGACCATTCATGTTGGGATTGATCAGAGAATGCCTAATACTTGGGAAGATCGTAGTAAATTAGAAGTCTTTATGAGACTTCAAGCTTTGAGAGTTGTGAGGGAAGAGAAGCTTGATGGGATTGTGATGTTTGCGGATGATAGTAATATGCATAGTATGGAGTTGTTTGATGAGATTCAGAATGTGAAGTGGTTTGGTACTGTTTCTGTTGGGATATTGGCTCATTCAGGAAATGCGGAAGAGATGGTTTTGTCGATGGAAAAGAGGAAAGAGATGGAGAAAGAGGAAGAAGAGGAGAGCTCTTCGTTACCTGTACAGGGTCCTGCTTGTAACTCAACTGATCAGTTGATTGGTTGGCATATTTTCAATACATTGCCATATGCGGGGAAGAGTGCAGTTTATATAGATGATGTTGCTGCGGTTTTGCCTCAAAAACTAGAGTGGTCTGGGTTTGTGTTGAACTCGAGATTGCTTTGGGAGGAAGCTGAGAATAAGCCAGAGTGGGTTAAGGACTTTGGGTCGTTGAATGAGAATGAAGGTGTGGAGAGTCCTTTGTCTCTGTTGAAGGATCCTTCAATGGTGGAGCCTCTTGGAAGCTGTGGAAGACAAGTTCTGCTATGGTGGCTTCGAGTAGAAGCACGCGCTGATAGCAAATTCCCTCCCGGATGGATAATTGATCCTCCGTTAGAGATCACAGTTGCGGCTAAACGCACTCCATGGCCAGATGTTCCTCCTGAGCCACCAACTAAAAAGAAAGATCAAATGCCATTATCCCAAGGCAACACCGTCGTGGTAATACCAAAGCAGCAACAACATCCAACGAAAATCCGAAAACCGAAACGCAAAAGTAAGAAAAGTAAACACGAACCTAGACCAACCGATACAACAACACAAGTTTATTCATCTTCGTCTAAGCATCAAGAAAGAAACTGA

Protein Analysis

525

Amino Acids

59.1

Weight (kDa)

9.06

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_43 PF03360 181 - 427 8.4e-48 Glycosyltransferase family 43
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011142)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 68
AccII CGCG 1 cut(s) 1287
AccIII TCCGGA 1 cut(s) 369
AciI CCGC 6 cut(s) 386, 779, 881, 1028, 1064, 1346
AclWI GGATC 9 cut(s) 287, 361, 367, 374, 380, 590, 1208, 1221, 1316
AcoI YGGCCR 3 cut(s) 280, 383, 1364
AcsI RAATTY 1 cut(s) 1298
AcuI CTGAAG 1 cut(s) 37
AcyI GRCGYC 1 cut(s) 65
AfaI GTAC 3 cut(s) 286, 844, 960
AfiI CCNNNNNNNGG 2 cut(s) 962, 1028
AgeI ACCGGT 1 cut(s) 617
AhdI GACNNNNNGTC 1 cut(s) 1162
AleI CACNNNNGTG 1 cut(s) 1433
AloI GAACNNNNNNTCC 2 cut(s) 1239, 1271
Alw21I GWGCWC 1 cut(s) 947
Alw26I GTCTC 4 cut(s) 72, 608, 715, 1206
AlwI GGATC 9 cut(s) 287, 361, 367, 374, 380, 590, 1208, 1221, 1316
Ama87I CYCGRG 1 cut(s) 1108
Aor13HI TCCGGA 1 cut(s) 369
AoxI GGCC 3 cut(s) 280, 383, 1364
ApeKI GCWGC 2 cut(s) 1061, 1450
ApoI RAATTY 1 cut(s) 1298
AsiGI ACCGGT 1 cut(s) 617
AspLEI GCGC 1 cut(s) 1289
AspS9I GGNCC 2 cut(s) 648, 965
AsuC2I CCSGG 3 cut(s) 94, 297, 1308
AvaI CYCGRG 1 cut(s) 1108
AvaII GGWCC 2 cut(s) 648, 965
BalI TGGCCA 1 cut(s) 1366
BamHI GGATCC 3 cut(s) 366, 372, 1213
BanII GRGCYC 1 cut(s) 947
BauI CACGAG 1 cut(s) 342
BbsI GAAGAC 3 cut(s) 178, 364, 1255
Bbv12I GWGCWC 1 cut(s) 947
BbvI GCAGC 2 cut(s) 1048, 1462
BccI CCATC 7 cut(s) 80, 475, 755, 883, 895, 913, 1305
BceAI ACGGC 2 cut(s) 267, 342
BcgI CGANNNNNNTGC 2 cut(s) 1414, 1448
BclI TGATCA 2 cut(s) 667, 985
BcnI CCSGG 3 cut(s) 94, 297, 1308
BcoDI GTCTC 4 cut(s) 72, 608, 715, 1206
BfaI CTAG 3 cut(s) 155, 1082, 1515
BglII AGATCT 1 cut(s) 56
BisI GCNGC 4 cut(s) 386, 1062, 1347, 1451
BlsI GCNGC 4 cut(s) 387, 1063, 1348, 1452
Bme1390I CCNGG 3 cut(s) 94, 297, 1308
Bme18I GGWCC 2 cut(s) 648, 965
BmeRI GACNNNNNGTC 1 cut(s) 1162
BmeT110I CYCGRG 1 cut(s) 1108
BmgT120I GGNCC 2 cut(s) 648, 965
BmiI GGNNCC 6 cut(s) 91, 368, 374, 966, 1215, 1230
BmrFI CCNGG 3 cut(s) 94, 297, 1308
BmsI GCATC 4 cut(s) 397, 534, 546, 1570
BpiI GAAGAC 3 cut(s) 178, 364, 1255
BplI GAGNNNNNCTC 2 cut(s) 929, 961
BpmI CTGGAG 1 cut(s) 160
Bpu10I CCTNAGC 1 cut(s) 1380
BpuMI CCSGG 3 cut(s) 94, 297, 1308
BsaBI GATNNNNATC 1 cut(s) 371
BsaHI GRCGYC 1 cut(s) 65
BsaI GGTCTC 1 cut(s) 608
BsaJI CCNNGG 3 cut(s) 380, 1361, 1420
BsaWI WCCGGW 2 cut(s) 369, 617
Bsc4I CCNNNNNNNGG 2 cut(s) 962, 1028
Bse118I RCCGGY 1 cut(s) 617
Bse1I ACTGG 1 cut(s) 541
Bse3DI GCAATG 1 cut(s) 1016
Bse8I GATNNNNATC 1 cut(s) 371
BseAI TCCGGA 1 cut(s) 369
BseDI CCNNGG 3 cut(s) 380, 1361, 1420
BseGI GGATG 5 cut(s) 388, 471, 787, 1316, 1459
BseJI GATNNNNATC 1 cut(s) 371
BseLI CCNNNNNNNGG 2 cut(s) 962, 1028
BseMI GCAATG 1 cut(s) 1016
BseMII CTCAG 2 cut(s) 1122, 1371
BseNI ACTGG 1 cut(s) 541
BseRI GAGGAG 1 cut(s) 953
BseX3I CGGCCG 1 cut(s) 280
BseXI GCAGC 2 cut(s) 1048, 1462
BsgI GTGCAG 2 cut(s) 113, 1059
Bsh1236I CGCG 1 cut(s) 1287
Bsh1285I CGRYCG 1 cut(s) 283
BshFI GGCC 3 cut(s) 282, 385, 1366
BshTI ACCGGT 1 cut(s) 617
BsiEI CGRYCG 1 cut(s) 283
BsiHKAI GWGCWC 1 cut(s) 947
BsiHKCI CYCGRG 1 cut(s) 1108
BsiSI CCGG 6 cut(s) 40, 93, 297, 370, 618, 1308
BslI CCNNNNNNNGG 2 cut(s) 962, 1028
BsmAI GTCTC 4 cut(s) 72, 608, 715, 1206
BsmBI CGTCTC 1 cut(s) 72
BsmI GAATGC 2 cut(s) 547, 681
BsnI GGCC 3 cut(s) 282, 385, 1366
Bso31I GGTCTC 1 cut(s) 608
BsoBI CYCGRG 1 cut(s) 1108
Bsp1286I GDGCHC 1 cut(s) 947
Bsp13I TCCGGA 1 cut(s) 369
Bsp1407I TGTACA 1 cut(s) 958
Bsp19I CCATGG 1 cut(s) 1361
BspACI CCGC 6 cut(s) 386, 779, 881, 1028, 1064, 1346
BspANI GGCC 3 cut(s) 282, 385, 1366
BspCNI CTCAG 2 cut(s) 1123, 1372
BspEI TCCGGA 1 cut(s) 369
BspFNI CGCG 1 cut(s) 1287
BspLI GGNNCC 6 cut(s) 91, 368, 374, 966, 1215, 1230
BspPI GGATC 9 cut(s) 287, 361, 367, 374, 380, 590, 1208, 1221, 1316
BspQI GCTCTTC 1 cut(s) 952
BspTNI GGTCTC 1 cut(s) 608
BsrDI GCAATG 1 cut(s) 1016
BsrFI RCCGGY 1 cut(s) 617
BsrGI TGTACA 1 cut(s) 958
BsrI ACTGG 1 cut(s) 541
BssAI RCCGGY 1 cut(s) 617
BssECI CCNNGG 3 cut(s) 380, 1361, 1420
BssNI GRCGYC 1 cut(s) 65
BssSI CACGAG 1 cut(s) 342
BssT1I CCWWGG 3 cut(s) 380, 1361, 1420
Bst2BI CACGAG 1 cut(s) 342
Bst4CI ACNGT 5 cut(s) 134, 316, 847, 1342, 1432
Bst6I CTCTTC 7 cut(s) 203, 234, 744, 879, 930, 952, 1028
BstACI GRCGYC 1 cut(s) 65
BstAUI TGTACA 1 cut(s) 958
BstC8I GCNNGC 1 cut(s) 1285
BstDEI CTNAG 4 cut(s) 644, 1131, 1380, 1557
BstDSI CCRYGG 1 cut(s) 1361
BstF5I GGATG 5 cut(s) 388, 471, 787, 1316, 1459
BstFNI CGCG 1 cut(s) 1287
BstHHI GCGC 1 cut(s) 1289
BstMAI GTCTC 4 cut(s) 72, 608, 715, 1206
BstMCI CGRYCG 1 cut(s) 283
BstMWI GCNNNNNNNGC 4 cut(s) 127, 602, 1267, 1293
BstSCI CCNGG 3 cut(s) 92, 295, 1306
BstUI CGCG 1 cut(s) 1287
BstV1I GCAGC 2 cut(s) 1048, 1462
BstV2I GAAGAC 3 cut(s) 178, 364, 1255
BstX2I RGATCY 4 cut(s) 56, 366, 372, 1213
BstYI RGATCY 4 cut(s) 56, 366, 372, 1213
BstZI CGGCCG 1 cut(s) 280
BsuRI GGCC 3 cut(s) 282, 385, 1366
BtgI CCRYGG 1 cut(s) 1361
BtsCI GGATG 5 cut(s) 388, 471, 787, 1316, 1459
BtsIMutI CAGTG 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 1285
CfoI GCGC 1 cut(s) 1289
Cfr10I RCCGGY 1 cut(s) 617
Cfr13I GGNCC 2 cut(s) 648, 965
Csp6I GTAC 3 cut(s) 285, 843, 959
CspAI ACCGGT 1 cut(s) 617
CviAII CATG 2 cut(s) 656, 1362
CviQI GTAC 3 cut(s) 285, 843, 959
DdeI CTNAG 4 cut(s) 644, 1131, 1380, 1557
DriI GACNNNNNGTC 1 cut(s) 1162
EaeI YGGCCR 3 cut(s) 280, 383, 1364
EagI CGGCCG 1 cut(s) 280
Eam1104I CTCTTC 7 cut(s) 203, 234, 744, 879, 930, 952, 1028
Eam1105I GACNNNNNGTC 1 cut(s) 1162
EarI CTCTTC 7 cut(s) 203, 234, 744, 879, 930, 952, 1028
Ecl136II GAGCTC 1 cut(s) 945
EclXI CGGCCG 1 cut(s) 280
Eco130I CCWWGG 3 cut(s) 380, 1361, 1420
Eco24I GRGCYC 1 cut(s) 947
Eco31I GGTCTC 1 cut(s) 608
Eco47I GGWCC 2 cut(s) 648, 965
Eco52I CGGCCG 1 cut(s) 280
Eco53kI GAGCTC 1 cut(s) 945
Eco57I CTGAAG 1 cut(s) 37
Eco88I CYCGRG 1 cut(s) 1108
EcoICRI GAGCTC 1 cut(s) 945
EcoO109I RGGNCCY 1 cut(s) 965
EcoT14I CCWWGG 3 cut(s) 380, 1361, 1420
EcoT22I ATGCAT 2 cut(s) 549, 798
EcoT38I GRGCYC 1 cut(s) 947
ErhI CCWWGG 3 cut(s) 380, 1361, 1420
Esp3I CGTCTC 1 cut(s) 72
FaeI CATG 2 cut(s) 659, 1365
FalI AAGNNNNNCTT 4 cut(s) 443, 475, 741, 773
FatI CATG 2 cut(s) 655, 1361
FauI CCCGC 1 cut(s) 1021
FauNDI CATATG 1 cut(s) 1024
FbaI TGATCA 2 cut(s) 667, 985
Fnu4HI GCNGC 4 cut(s) 386, 1062, 1347, 1451
FokI GGATG 5 cut(s) 375, 478, 794, 1323, 1446
FriOI GRGCYC 1 cut(s) 947
Fsp4HI GCNGC 4 cut(s) 386, 1062, 1347, 1451
FspBI CTAG 3 cut(s) 155, 1082, 1515
GlaI GCGC 1 cut(s) 1288
GluI GCNGC 4 cut(s) 386, 1062, 1347, 1451
GsuI CTGGAG 1 cut(s) 160
HaeIII GGCC 3 cut(s) 282, 385, 1366
HapII CCGG 6 cut(s) 40, 93, 297, 370, 618, 1308
HhaI GCGC 1 cut(s) 1289
Hin1I GRCGYC 1 cut(s) 65
Hin1II CATG 2 cut(s) 659, 1365
Hin6I GCGC 1 cut(s) 1287
HinP1I GCGC 1 cut(s) 1287
HindIII AAGCTT 3 cut(s) 522, 729, 755
HinfI GANTC 5 cut(s) 74, 171, 394, 820, 1192
HpaII CCGG 6 cut(s) 40, 93, 297, 370, 618, 1308
Hpy166II GTNNAC 2 cut(s) 271, 1505
Hpy188I TCNGA 8 cut(s) 24, 56, 63, 393, 423, 672, 825, 1475
Hpy8I GTNNAC 2 cut(s) 271, 1505
Hpy99I CGWCG 5 cut(s) 67, 316, 328, 334, 1436
HpyAV CCTTC 3 cut(s) 1175, 1204, 1227
HpyCH4III ACNGT 5 cut(s) 134, 316, 847, 1342, 1432
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 6 cut(s) 130, 529, 547, 632, 796, 1040
HpyF10VI GCNNNNNNNGC 4 cut(s) 127, 602, 1267, 1293
HpyF3I CTNAG 4 cut(s) 644, 1131, 1380, 1557
HpySE526I ACGT 1 cut(s) 65
Hsp92I GRCGYC 1 cut(s) 65
Hsp92II CATG 2 cut(s) 659, 1365
HspAI GCGC 1 cut(s) 1287
Kpn2I TCCGGA 1 cut(s) 369
Ksp22I TGATCA 2 cut(s) 667, 985
LguI GCTCTTC 1 cut(s) 952
LmnI GCTCC 3 cut(s) 95, 299, 1228
Lsp1109I GCAGC 2 cut(s) 1048, 1462
LweI GCATC 4 cut(s) 397, 534, 546, 1570
MaeI CTAG 3 cut(s) 155, 1082, 1515
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 4 cut(s) 26, 493, 951, 974
MflI RGATCY 4 cut(s) 56, 366, 372, 1213
MhlI GDGCHC 1 cut(s) 947
MlsI TGGCCA 1 cut(s) 1366
MluCI AATT 3 cut(s) 704, 1298, 1317
MluNI TGGCCA 1 cut(s) 1366
MlyI GAGTC 1 cut(s) 1201
MmeI TCCRAC 3 cut(s) 86, 334, 1487
Mox20I TGGCCA 1 cut(s) 1366
Mph1103I ATGCAT 2 cut(s) 549, 798
MroI TCCGGA 1 cut(s) 369
MscI TGGCCA 1 cut(s) 1366
MseI TTAA 3 cut(s) 32, 104, 1152
MslI CAYNNNNRTG 2 cut(s) 264, 1433
Msp20I TGGCCA 1 cut(s) 1366
MspI CCGG 6 cut(s) 40, 93, 297, 370, 618, 1308
MspR9I CCNGG 3 cut(s) 94, 297, 1308
Mva1269I GAATGC 2 cut(s) 547, 681
MvnI CGCG 1 cut(s) 1287
MwoI GCNNNNNNNGC 4 cut(s) 127, 602, 1267, 1293
NciI CCSGG 3 cut(s) 94, 297, 1308
NcoI CCATGG 1 cut(s) 1361
NdeI CATATG 1 cut(s) 1024
NlaIII CATG 2 cut(s) 659, 1365
NlaIV GGNNCC 6 cut(s) 91, 368, 374, 966, 1215, 1230
NmeAIII GCCGAG 1 cut(s) 141
NmuCI GTSAC 1 cut(s) 493
NsiI ATGCAT 2 cut(s) 549, 798
OliI CACNNNNGTG 1 cut(s) 1433
PaeR7I CTCGAG 1 cut(s) 1108
PciSI GCTCTTC 1 cut(s) 952
PcsI WCGNNNNNNNCGW 1 cut(s) 320
PctI GAATGC 2 cut(s) 547, 681
PfeI GAWTC 4 cut(s) 74, 171, 394, 820
PfoI TCCNGGA 3 cut(s) 92, 295, 1306
PinAI ACCGGT 1 cut(s) 617
PkrI GCNGC 4 cut(s) 387, 1063, 1348, 1452
PleI GAGTC 1 cut(s) 1200
PpsI GAGTC 1 cut(s) 1200
PpuMI RGGWCCY 1 cut(s) 965
Psp124BI GAGCTC 1 cut(s) 947
Psp5II RGGWCCY 1 cut(s) 965
PspN4I GGNNCC 6 cut(s) 91, 368, 374, 966, 1215, 1230
PspPI GGNCC 2 cut(s) 648, 965
PspPPI RGGWCCY 1 cut(s) 965
PsuI RGATCY 4 cut(s) 56, 366, 372, 1213
RsaI GTAC 3 cut(s) 286, 844, 960
RsaNI GTAC 3 cut(s) 285, 843, 959
RseI CAYNNNNRTG 2 cut(s) 264, 1433
SacI GAGCTC 1 cut(s) 947
SapI GCTCTTC 1 cut(s) 952
SaqAI TTAA 3 cut(s) 32, 104, 1152
SatI GCNGC 4 cut(s) 386, 1062, 1347, 1451
Sau96I GGNCC 2 cut(s) 648, 965
SchI GAGTC 1 cut(s) 1201
ScrFI CCNGG 3 cut(s) 94, 297, 1308
SduI GDGCHC 1 cut(s) 947
SfaNI GCATC 4 cut(s) 397, 534, 546, 1570
Sfr274I CTCGAG 1 cut(s) 1108
SinI GGWCC 2 cut(s) 648, 965
SlaI CTCGAG 1 cut(s) 1108
SmiMI CAYNNNNRTG 2 cut(s) 264, 1433
SmlI CTYRAG 1 cut(s) 1108
SmoI CTYRAG 1 cut(s) 1108
Sse9I AATT 3 cut(s) 704, 1298, 1317
SsiI CCGC 6 cut(s) 386, 779, 881, 1028, 1064, 1346
SspMI CTAG 3 cut(s) 155, 1082, 1515
SstI GAGCTC 1 cut(s) 947
StyD4I CCNGG 3 cut(s) 92, 295, 1306
StyI CCWWGG 3 cut(s) 380, 1361, 1420
TaaI ACNGT 5 cut(s) 134, 316, 847, 1342, 1432
TaiI ACGT 1 cut(s) 68
TaqI TCGA 6 cut(s) 169, 264, 291, 899, 1109, 1273
TasI AATT 3 cut(s) 704, 1298, 1317
TatI WGTACW 1 cut(s) 958
TauI GCSGC 2 cut(s) 388, 1349
TfiI GAWTC 4 cut(s) 74, 171, 394, 820
Tru1I TTAA 3 cut(s) 32, 104, 1152
Tru9I TTAA 3 cut(s) 32, 104, 1152
TscAI CASTG 1 cut(s) 137
TseFI GTSAC 1 cut(s) 493
TseI GCWGC 2 cut(s) 1061, 1450
Tsp45I GTSAC 1 cut(s) 493
TspDTI ATGAA 6 cut(s) 17, 425, 482, 644, 1194, 1536
TspGWI ACGGA 5 cut(s) 70, 222, 321, 365, 1317
TspRI CASTG 1 cut(s) 137
VpaK11BI GGWCC 2 cut(s) 648, 965
XapI RAATTY 1 cut(s) 1298
XhoI CTCGAG 1 cut(s) 1108
XspI CTAG 3 cut(s) 155, 1082, 1515
ZraI GACGTC 1 cut(s) 66
Zsp2I ATGCAT 2 cut(s) 549, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.