Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0011142

Physical Location & Seq

Genomic Coordinates Forward (+)

10955651 .. 10958251

Gene Structure 2601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g14360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGTTGAACCACTTGGAAATTGTGGGCGCCAAGTGTTGCTCTGGTGGCTCCGCGTTGAAGCTCGTTTCGATAGTAAATTTCCTCCCAGATGGACTATAGATCCTCCTTTGGAAATCACCGTACCATCGAAACGTACACCATGGCCTGATGCTCCTCCTGAACTCCCAGCTAATGAAAAAACAGAAACTGGAGTCGAAGAGCACACAGTGAAGCGTCCTATAAAAATTCGTGCACCCAGAACAAAGAGAAGTCCTCGGAACAAGAGAAAGCACGAGACAAAAACGATTGACATGCAGGCTTCTGCAAGGCATACGGAACAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000271 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009791 GO:0009832 GO:0009834 GO:0009987 GO:0010051 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0022414 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045491 GO:0045492 GO:0047517 GO:0048316 GO:0048354 GO:0048359 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_43

Protein Analysis

109

Amino Acids

12.61

Weight (kDa)

10.08

Isoelectric Point (pI)

71.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36890 AT5G67230
fragaria_vesca	FvH4_1g16500
malus_domestica	MD02G1177600.v1.1 MD15G1287400.v1.1
prunus_persica	Prupe.6G230500_v2.0.a1
pyrus_communis	pycom02g14350 pycom02g14360 pycom15g25100
rosa_chinensis	RchiOBHm_Chr2g0106411
rosa_laevigata	RLG00000017496
rosa_multiflora	Rmu_sc0004015.1_g000001 Rmu_sc0016473.1_g000007
rosa_roxburghii	Rroxscaffold_2G00137210
rosa_rugosa	Rorug02G0135200
rosa_samantha	Rh2AG186400 Rh2BG196500 Rh2CG191400 Rh2DG192500
rosa_wichuraiana	Rw2G014520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	27
AccII	CGCG	1 cut(s)	54
AciI	CCGC	1 cut(s)	52
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	2 cut(s)	77, 225
AcyI	GRCGYC	1 cut(s)	28
AdeI	CACNNNGTG	1 cut(s)	208
AfaI	GTAC	2 cut(s)	123, 136
AgsI	TTSAA	2 cut(s)	8, 59
AluBI	AGCT	2 cut(s)	62, 170
AluI	AGCT	2 cut(s)	62, 170
Alw21I	GWGCWC	2 cut(s)	204, 235
Alw26I	GTCTC	1 cut(s)	269
Alw44I	GTGCAC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	95
AlwNI	CAGNNNCTG	1 cut(s)	188
AoxI	GGCC	1 cut(s)	143
ApaLI	GTGCAC	1 cut(s)	231
ApoI	RAATTY	2 cut(s)	77, 225
AspLEI	GCGC	1 cut(s)	30
AsuHPI	GGTGA	1 cut(s)	109
BaeGI	GKGCMC	1 cut(s)	235
BanI	GGYRCC	1 cut(s)	27
BauI	CACGAG	1 cut(s)	272
Bbv12I	GWGCWC	2 cut(s)	204, 235
BccI	CCATC	2 cut(s)	84, 133
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BcoDI	GTCTC	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	31
BmiI	GGNNCC	2 cut(s)	29, 50
BmsI	GCATC	1 cut(s)	139
BplI	GAGNNNNNCTC	2 cut(s)	238, 270
BpmI	CTGGAG	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	28
BsaJI	CCNNGG	2 cut(s)	140, 254
Bse1I	ACTGG	1 cut(s)	193
BseDI	CCNNGG	2 cut(s)	140, 254
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	144
BseSI	GKGCMC	1 cut(s)	235
BseYI	CCCAGC	1 cut(s)	166
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	145
BshNI	GGYRCC	1 cut(s)	27
BsiHKAI	GWGCWC	2 cut(s)	204, 235
BsmAI	GTCTC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	204, 235
Bsp143I	GATC	1 cut(s)	100
Bsp19I	CCATGG	1 cut(s)	140
BspACI	CCGC	1 cut(s)	52
BspANI	GGCC	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	29, 50
BspPI	GGATC	1 cut(s)	95
BspQI	GCTCTTC	1 cut(s)	192
BspT107I	GGYRCC	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	140, 254
BssMI	GATC	1 cut(s)	100
BssNI	GRCGYC	1 cut(s)	28
BssSI	CACGAG	1 cut(s)	272
BssT1I	CCWWGG	1 cut(s)	140
Bst2BI	CACGAG	1 cut(s)	272
Bst4CI	ACNGT	2 cut(s)	121, 208
Bst6I	CTCTTC	1 cut(s)	192
BstACI	GRCGYC	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	297
BstDSI	CCRYGG	1 cut(s)	140
BstFNI	CGCG	1 cut(s)	54
BstH2I	RGCGCY	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNSI	RCATGY	1 cut(s)	295
BstSFI	CTRYAG	1 cut(s)	96
BstSLI	GKGCMC	1 cut(s)	235
BstUI	CGCG	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	145
BtgI	CCRYGG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	297
CaiI	CAGNNNCTG	1 cut(s)	188
CfoI	GCGC	1 cut(s)	30
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	2 cut(s)	122, 135
CviAII	CATG	2 cut(s)	141, 292
CviJI	RGCY	5 cut(s)	49, 62, 145, 170, 299
CviKI_1	RGCY	5 cut(s)	49, 62, 145, 170, 299
CviQI	GTAC	2 cut(s)	122, 135
DinI	GGCGCC	1 cut(s)	29
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
DraIII	CACNNNGTG	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	140
EgeI	GGCGCC	1 cut(s)	29
EheI	GGCGCC	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	140
FaeI	CATG	2 cut(s)	144, 295
FaiI	YATR	5 cut(s)	98, 142, 221, 293, 312
FatI	CATG	2 cut(s)	140, 291
GlaI	GCGC	1 cut(s)	29
GsaI	CCCAGC	1 cut(s)	170
GsuI	CTGGAG	1 cut(s)	210
HaeII	RGCGCY	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	145
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	30
Hin1I	GRCGYC	1 cut(s)	28
Hin1II	CATG	2 cut(s)	144, 295
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HinfI	GANTC	1 cut(s)	192
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	2 cut(s)	137, 233
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	2 cut(s)	137, 233
HpyCH4III	ACNGT	2 cut(s)	121, 208
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	3 cut(s)	233, 295, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpySE526I	ACGT	1 cut(s)	133
Hsp92I	GRCGYC	1 cut(s)	28
Hsp92II	CATG	2 cut(s)	144, 295
HspAI	GCGC	1 cut(s)	28
KasI	GGCGCC	1 cut(s)	27
Kzo9I	GATC	1 cut(s)	100
LguI	GCTCTTC	1 cut(s)	192
LmnI	GCTCC	2 cut(s)	54, 157
LpnPI	CCDG	8 cut(s)	28, 100, 159, 171, 174, 180, 250, 281
LweI	GCATC	1 cut(s)	139
MaeII	ACGT	1 cut(s)	133
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	1 cut(s)	209
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	2 cut(s)	204, 235
MluCI	AATT	3 cut(s)	19, 77, 225
Mly113I	GGCGCC	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	201
MnlI	CCTC	4 cut(s)	93, 114, 165, 264
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	46
NarI	GGCGCC	1 cut(s)	28
NcoI	CCATGG	1 cut(s)	140
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	2 cut(s)	144, 295
NlaIV	GGNNCC	2 cut(s)	29, 50
NspI	RCATGY	1 cut(s)	295
PciSI	GCTCTTC	1 cut(s)	192
PleI	GAGTC	1 cut(s)	200
PluTI	GGCGCC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	200
PspFI	CCCAGC	1 cut(s)	166
PspN4I	GGNNCC	2 cut(s)	29, 50
PstNI	CAGNNNCTG	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	100
RsaI	GTAC	2 cut(s)	123, 136
RsaNI	GTAC	2 cut(s)	122, 135
SapI	GCTCTTC	1 cut(s)	192
Sau3AI	GATC	1 cut(s)	100
SchI	GAGTC	1 cut(s)	201
SduI	GDGCHC	2 cut(s)	204, 235
SetI	ASST	3 cut(s)	64, 136, 172
SfaNI	GCATC	1 cut(s)	139
SfcI	CTRYAG	1 cut(s)	96
SfoI	GGCGCC	1 cut(s)	29
Sse9I	AATT	3 cut(s)	19, 77, 225
SsiI	CCGC	1 cut(s)	52
SspDI	GGCGCC	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	140
TaaI	ACNGT	2 cut(s)	121, 208
TaiI	ACGT	1 cut(s)	136
TaqI	TCGA	3 cut(s)	69, 128, 195
TasI	AATT	3 cut(s)	19, 77, 225
TscAI	CASTG	1 cut(s)	213
TspDTI	ATGAA	1 cut(s)	189
TspRI	CASTG	1 cut(s)	213
VneI	GTGCAC	1 cut(s)	231
XapI	RAATTY	2 cut(s)	77, 225
XceI	RCATGY	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.