AT5G67230

Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
26822432 .. 26824328
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G67230.1

Sequence Viewer

Length: 1479 bp
ATGAAGCTCTCTGTGTTTCGATTGAGCTATTGGAACCGTCGAGGAAGTAGTTTCAGATCATCGCCGTCGTTGGATCCATCATTCGATGGCAAATCTCCGTCGTCTGTGTTTTGGTTCGTGATTCATGGTCTCTGCTGCTTGATCAGCTTGATTCTAGGGTTCCGATTCAGCCATTTAGTACTCTTCTTCCTTTTCTCGACTTCCGTCACCAATCTATACACAACGCCATTTCTCTTTGCCGGAAACGGCGGTGTAAGCCAGCTTCTCCGGCTAAAACCTCTGGAAACAGCGACTAACAGCACGGTGAAGAAGAACTCTCGAGTGGTGGTTGGAAGACACGGGATCCGGATCCGTCCATGGCCTCACCCGAATCCGATTGAGGTATTGAGAGCTCATCAGTTGCTTGTGAGAGTACAGAAAGAGCAGAAATCGATGTACGGTGTGAGGAGCCCTAGGACTGTGATTGTGGTGACGCCGACTTATGTACGGACTTTTCAGGCGCTTCATTTGACCGGAGTTATGCACTCGCTTATGCTTGTTCCGTACGATTTGGTTTGGATCGTTGTGGAAGCTGGTGGAATCACTAACGAGACTGCTTCGTTTATCGCAAAATCAGGATTAAAGACGATTCACTTAGGATTCGATCAGAAAATGCCTAATACATGGGAAGATCGTCACAAATTGGAGACCAAAATGAGACTTCACGCCTTGAGAGTTGTGAGAGAGAAGAAGTTAGATGGGATTGTTATGTTTGCTGATGATAGCAATATGCATAGTATGGAGCTTTTTGATGAGATTCAAACTGTGAAATGGTTTGGTGCTCTATCTGTTGGTATACTTGCTCATTCTGGTAATGCAGATGAATTATCATCGATCTTGAAGAATGAACAAGGGAAGAACAAAGAGAAACCTTCAATGCCAATCCAAGGTCCTAGTTGTAATTCCTCTGAGAAATTAGTGGGTTGGCACATTTTCAACACACAGCCTTATGCCAAGAAGACTGCAGTGTATATCGATGAGAAAGCGCCTGTGATGCCTAGTAAGATGGAATGGTCAGGGTTTGTGTTGAATTCTAGATTGCTCTGGAAGGAATCTTTAGATGATAAACCAGCATGGGTTAAAGATCTCAGCTTGTTGGATGATGGTTATGCGGAAATTGAGAGTCCTTTGTCTTTGGTGAAGGATCCTTCCATGGTGGAGCCACTTGGAAGCTGTGGCCGTCGTGTCTTGCTTTGGTGGCTTCGAGTTGAAGCTCGAGCTGATAGCAAATTCCCACCTGGCTGGATCATAAAGTCACCTTTAGAAATCACAGTGCCATCAAAGCGGACACCCTGGCCAGACTCTTCCTCAGAGCTCCCAGCGGCGGCGATCAAAGAGGCAAAAAGCAACTCTAAGCCAAGAGTGTCGAAGAGCAAGAGCTATAAGGAGAAACAAGAACCTAAAGCTTTCGATGGTGTCAAAGTGTCAGCAACTAGCTGA

Protein Analysis

492

Amino Acids

55.35

Weight (kDa)

9.67

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_43 PF03360 173 - 417 2.5e-52 Glycosyltransferase family 43
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011142)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 835
AccIII TCCGGA 1 cut(s) 345
AciI CCGC 5 cut(s) 249, 1151, 1324, 1361, 1364
AcoI YGGCCR 2 cut(s) 1216, 1334
AcsI RAATTY 2 cut(s) 1069, 1268
AcyI GRCGYC 1 cut(s) 473
AfaI GTAC 5 cut(s) 180, 414, 437, 486, 545
AfiI CCNNNNNNNGG 2 cut(s) 926, 1363
AgsI TTSAA 6 cut(s) 800, 880, 915, 976, 1069, 1250
AjnI CCWGG 2 cut(s) 1276, 1331
Alw21I GWGCWC 3 cut(s) 394, 823, 1356
Alw26I GTCTC 4 cut(s) 134, 584, 680, 691
Ama87I CYCGRG 2 cut(s) 318, 1254
Aor13HI TCCGGA 1 cut(s) 345
AoxI GGCC 3 cut(s) 359, 1216, 1334
ApeKI GCWGC 1 cut(s) 135
ApoI RAATTY 2 cut(s) 1069, 1268
AspA2I CCTAGG 1 cut(s) 452
AspLEI GCGC 2 cut(s) 502, 1027
AspS9I GGNCC 1 cut(s) 929
AsuHPI GGTGA 6 cut(s) 199, 316, 356, 481, 1189, 1287
AvaI CYCGRG 2 cut(s) 318, 1254
AvaII GGWCC 1 cut(s) 929
AvrII CCTAGG 1 cut(s) 452
BalI TGGCCA 1 cut(s) 1336
BamHI GGATCC 4 cut(s) 73, 342, 348, 1183
BanII GRGCYC 3 cut(s) 394, 452, 1356
BarI GAAGNNNNNNTAC 2 cut(s) 246, 278
BbsI GAAGAC 2 cut(s) 340, 1004
Bbv12I GWGCWC 3 cut(s) 394, 823, 1356
BbvI GCAGC 1 cut(s) 122
BccI CCATC 7 cut(s) 80, 85, 731, 1039, 1136, 1324, 1445
BceAI ACGGC 3 cut(s) 49, 262, 1203
BciT130I CCWGG 2 cut(s) 1278, 1333
BclI TGATCA 1 cut(s) 141
BcoDI GTCTC 4 cut(s) 134, 584, 680, 691
BfaI CTAG 6 cut(s) 155, 453, 933, 1038, 1074, 1473
BfmI CTRYAG 1 cut(s) 1002
BfoI RGCGCY 2 cut(s) 503, 1028
BglII AGATCT 1 cut(s) 1123
BisI GCNGC 3 cut(s) 136, 1362, 1365
BlnI CCTAGG 1 cut(s) 452
BlsI GCNGC 3 cut(s) 137, 1363, 1366
BmcAI AGTACT 1 cut(s) 180
Bme1390I CCNGG 2 cut(s) 1278, 1333
Bme18I GGWCC 1 cut(s) 929
BmeT110I CYCGRG 2 cut(s) 318, 1254
BmgT120I GGNCC 1 cut(s) 929
BmiI GGNNCC 8 cut(s) 35, 75, 161, 344, 350, 449, 1185, 1200
BmrFI CCNGG 2 cut(s) 1278, 1333
BmsI GCATC 1 cut(s) 1023
BoxI GACNNNNGTC 1 cut(s) 203
BpiI GAAGAC 2 cut(s) 340, 1004
BpuEI CTTGAG 1 cut(s) 730
Bsa29I ATCGAT 3 cut(s) 431, 872, 1014
BsaBI GATNNNNATC 1 cut(s) 347
BsaHI GRCGYC 1 cut(s) 473
BsaI GGTCTC 2 cut(s) 134, 680
BsaJI CCNNGG 5 cut(s) 356, 452, 925, 1191, 1331
BsaWI WCCGGW 2 cut(s) 345, 512
Bsc4I CCNNNNNNNGG 2 cut(s) 926, 1363
Bse8I GATNNNNATC 1 cut(s) 347
BseAI TCCGGA 1 cut(s) 345
BseBI CCWGG 2 cut(s) 1278, 1333
BseCI ATCGAT 3 cut(s) 431, 872, 1014
BseDI CCNNGG 5 cut(s) 356, 452, 925, 1191, 1331
BseGI GGATG 1 cut(s) 1144
BseJI GATNNNNATC 1 cut(s) 347
BseLI CCNNNNNNNGG 2 cut(s) 926, 1363
BseMII CTCAG 3 cut(s) 939, 1141, 1362
BseRI GAGGAG 1 cut(s) 460
BseXI GCAGC 1 cut(s) 122
BseYI CCCAGC 1 cut(s) 1357
BshFI GGCC 3 cut(s) 361, 1218, 1336
BshVI ATCGAT 3 cut(s) 431, 872, 1014
BsiHKAI GWGCWC 3 cut(s) 394, 823, 1356
BsiHKCI CYCGRG 2 cut(s) 318, 1254
BsiSI CCGG 4 cut(s) 240, 268, 346, 513
BsiWI CGTACG 1 cut(s) 543
BslI CCNNNNNNNGG 2 cut(s) 926, 1363
BsmAI GTCTC 4 cut(s) 134, 584, 680, 691
BsnI GGCC 3 cut(s) 361, 1218, 1336
Bso31I GGTCTC 2 cut(s) 134, 680
BsoBI CYCGRG 2 cut(s) 318, 1254
Bsp1286I GDGCHC 4 cut(s) 394, 452, 823, 1356
Bsp13I TCCGGA 1 cut(s) 345
Bsp19I CCATGG 2 cut(s) 356, 1191
BspACI CCGC 5 cut(s) 249, 1151, 1324, 1361, 1364
BspANI GGCC 3 cut(s) 361, 1218, 1336
BspCNI CTCAG 3 cut(s) 940, 1140, 1361
BspDI ATCGAT 3 cut(s) 431, 872, 1014
BspEI TCCGGA 1 cut(s) 345
BspLI GGNNCC 8 cut(s) 35, 75, 161, 344, 350, 449, 1185, 1200
BspMAI CTGCAG 1 cut(s) 1006
BspQI GCTCTTC 1 cut(s) 1403
BspTNI GGTCTC 2 cut(s) 134, 680
BssECI CCNNGG 5 cut(s) 356, 452, 925, 1191, 1331
BssNAI GTATAC 1 cut(s) 836
BssNI GRCGYC 1 cut(s) 473
BssT1I CCWWGG 4 cut(s) 356, 452, 925, 1191
Bst1107I GTATAC 1 cut(s) 836
Bst2UI CCWGG 2 cut(s) 1278, 1333
Bst4CI ACNGT 6 cut(s) 38, 304, 440, 460, 805, 1312
Bst6I CTCTTC 3 cut(s) 188, 1348, 1403
BstACI GRCGYC 1 cut(s) 473
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 5 cut(s) 634, 948, 1127, 1348, 1392
BstDSI CCRYGG 2 cut(s) 356, 1191
BstF5I GGATG 1 cut(s) 1144
BstH2I RGCGCY 2 cut(s) 503, 1028
BstHHI GCGC 2 cut(s) 502, 1027
BstMAI GTCTC 4 cut(s) 134, 584, 680, 691
BstMWI GCNNNNNNNGC 6 cut(s) 144, 255, 268, 1033, 1237, 1321
BstNI CCWGG 2 cut(s) 1278, 1333
BstPAI GACNNNNGTC 1 cut(s) 203
BstSCI CCNGG 2 cut(s) 1276, 1331
BstSFI CTRYAG 1 cut(s) 1002
BstV1I GCAGC 1 cut(s) 122
BstV2I GAAGAC 2 cut(s) 340, 1004
BstX2I RGATCY 5 cut(s) 73, 342, 348, 1123, 1183
BstXI CCANNNNNNTGG 1 cut(s) 1281
BstYI RGATCY 5 cut(s) 73, 342, 348, 1123, 1183
BstZ17I GTATAC 1 cut(s) 836
Bsu15I ATCGAT 3 cut(s) 431, 872, 1014
BsuRI GGCC 3 cut(s) 361, 1218, 1336
BsuTUI ATCGAT 3 cut(s) 431, 872, 1014
BtgI CCRYGG 2 cut(s) 356, 1191
BtgZI GCGATG 1 cut(s) 45
BtsCI GGATG 1 cut(s) 1144
BtsI GCAGTG 1 cut(s) 1011
BtsIMutI CAGTG 2 cut(s) 1011, 1317
Cac8I GCNNGC 1 cut(s) 260
CfoI GCGC 2 cut(s) 502, 1027
Cfr13I GGNCC 1 cut(s) 929
ClaI ATCGAT 3 cut(s) 431, 872, 1014
CseI GACGC 1 cut(s) 481
Csp6I GTAC 5 cut(s) 179, 413, 436, 485, 544
CviAII CATG 5 cut(s) 125, 357, 663, 1113, 1192
CviQI GTAC 5 cut(s) 179, 413, 436, 485, 544
DdeI CTNAG 5 cut(s) 634, 948, 1127, 1348, 1392
EaeI YGGCCR 2 cut(s) 1216, 1334
Eam1104I CTCTTC 3 cut(s) 188, 1348, 1403
EarI CTCTTC 3 cut(s) 188, 1348, 1403
Ecl136II GAGCTC 2 cut(s) 392, 1354
Eco130I CCWWGG 4 cut(s) 356, 452, 925, 1191
Eco24I GRGCYC 3 cut(s) 394, 452, 1356
Eco31I GGTCTC 2 cut(s) 134, 680
Eco47I GGWCC 1 cut(s) 929
Eco53kI GAGCTC 2 cut(s) 392, 1354
Eco88I CYCGRG 2 cut(s) 318, 1254
EcoICRI GAGCTC 2 cut(s) 392, 1354
EcoO109I RGGNCCY 1 cut(s) 929
EcoRI GAATTC 1 cut(s) 1069
EcoRII CCWGG 2 cut(s) 1276, 1331
EcoT14I CCWWGG 4 cut(s) 356, 452, 925, 1191
EcoT22I ATGCAT 1 cut(s) 774
EcoT38I GRGCYC 3 cut(s) 394, 452, 1356
ErhI CCWWGG 4 cut(s) 356, 452, 925, 1191
FaeI CATG 5 cut(s) 128, 360, 666, 1116, 1195
FatI CATG 5 cut(s) 124, 356, 662, 1112, 1191
FbaI TGATCA 1 cut(s) 141
FblI GTMKAC 1 cut(s) 835
Fnu4HI GCNGC 3 cut(s) 136, 1362, 1365
FokI GGATG 1 cut(s) 1151
FriOI GRGCYC 3 cut(s) 394, 452, 1356
Fsp4HI GCNGC 3 cut(s) 136, 1362, 1365
FspBI CTAG 6 cut(s) 155, 453, 933, 1038, 1074, 1473
GlaI GCGC 2 cut(s) 501, 1026
GluI GCNGC 3 cut(s) 136, 1362, 1365
GsaI CCCAGC 1 cut(s) 1361
HaeII RGCGCY 2 cut(s) 503, 1028
HaeIII GGCC 3 cut(s) 361, 1218, 1336
HapII CCGG 4 cut(s) 240, 268, 346, 513
HgaI GACGC 1 cut(s) 481
HhaI GCGC 2 cut(s) 502, 1027
Hin1I GRCGYC 1 cut(s) 473
Hin1II CATG 5 cut(s) 128, 360, 666, 1116, 1195
Hin6I GCGC 2 cut(s) 500, 1025
HinP1I GCGC 2 cut(s) 500, 1025
HindIII AAGCTT 1 cut(s) 1443
HpaII CCGG 4 cut(s) 240, 268, 346, 513
HphI GGTGA 6 cut(s) 199, 316, 356, 481, 1189, 1287
Hpy166II GTNNAC 1 cut(s) 836
Hpy188I TCNGA 6 cut(s) 56, 164, 375, 648, 949, 1351
Hpy188III TCNNGA 9 cut(s) 118, 196, 281, 318, 346, 615, 877, 1074, 1084
Hpy8I GTNNAC 1 cut(s) 836
Hpy99I CGWCG 4 cut(s) 42, 70, 103, 1224
HpyAV CCTTC 4 cut(s) 921, 1081, 1174, 1197
HpyCH4III ACNGT 6 cut(s) 38, 304, 440, 460, 805, 1312
HpyCH4V TGCA 4 cut(s) 523, 772, 857, 1004
HpyF10VI GCNNNNNNNGC 6 cut(s) 144, 255, 268, 1033, 1237, 1321
HpyF3I CTNAG 5 cut(s) 634, 948, 1127, 1348, 1392
Hsp92I GRCGYC 1 cut(s) 473
Hsp92II CATG 5 cut(s) 128, 360, 666, 1116, 1195
HspAI GCGC 2 cut(s) 500, 1025
Kpn2I TCCGGA 1 cut(s) 345
Ksp22I TGATCA 1 cut(s) 141
LguI GCTCTTC 1 cut(s) 1403
LmnI GCTCC 4 cut(s) 447, 781, 1198, 1359
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 1 cut(s) 1023
MaeI CTAG 6 cut(s) 155, 453, 933, 1038, 1074, 1473
MaeIII GTNAC 4 cut(s) 205, 469, 674, 1293
MflI RGATCY 5 cut(s) 73, 342, 348, 1123, 1183
MhlI GDGCHC 4 cut(s) 394, 452, 823, 1356
MlsI TGGCCA 1 cut(s) 1336
MluCI AATT 7 cut(s) 680, 863, 940, 953, 1069, 1155, 1268
MluNI TGGCCA 1 cut(s) 1336
MlyI GAGTC 2 cut(s) 1171, 1334
MmeI TCCRAC 3 cut(s) 51, 310, 1116
MnlI CCTC 8 cut(s) 35, 288, 372, 373, 438, 955, 1357, 1369
Mox20I TGGCCA 1 cut(s) 1336
Mph1103I ATGCAT 1 cut(s) 774
MroI TCCGGA 1 cut(s) 345
MscI TGGCCA 1 cut(s) 1336
MseI TTAA 2 cut(s) 620, 1119
Msp20I TGGCCA 1 cut(s) 1336
MspA1I CMGCKG 1 cut(s) 1361
MspI CCGG 4 cut(s) 240, 268, 346, 513
MspR9I CCNGG 2 cut(s) 1278, 1333
MvaI CCWGG 2 cut(s) 1278, 1333
MwoI GCNNNNNNNGC 6 cut(s) 144, 255, 268, 1033, 1237, 1321
NcoI CCATGG 2 cut(s) 356, 1191
NlaIII CATG 5 cut(s) 128, 360, 666, 1116, 1195
NlaIV GGNNCC 8 cut(s) 35, 75, 161, 344, 350, 449, 1185, 1200
NmuCI GTSAC 4 cut(s) 205, 469, 674, 1293
NsiI ATGCAT 1 cut(s) 774
PaeR7I CTCGAG 2 cut(s) 318, 1254
PciSI GCTCTTC 1 cut(s) 1403
PfeI GAWTC 9 cut(s) 121, 151, 165, 370, 579, 628, 639, 796, 1091
Pfl23II CGTACG 1 cut(s) 543
PkrI GCNGC 3 cut(s) 137, 1363, 1366
PleI GAGTC 2 cut(s) 1170, 1334
PpsI GAGTC 2 cut(s) 1170, 1334
PpuMI RGGWCCY 1 cut(s) 929
PshAI GACNNNNGTC 1 cut(s) 203
Psp124BI GAGCTC 2 cut(s) 394, 1356
Psp5II RGGWCCY 1 cut(s) 929
Psp6I CCWGG 2 cut(s) 1276, 1331
PspFI CCCAGC 1 cut(s) 1357
PspGI CCWGG 2 cut(s) 1276, 1331
PspLI CGTACG 1 cut(s) 543
PspN4I GGNNCC 8 cut(s) 35, 75, 161, 344, 350, 449, 1185, 1200
PspPI GGNCC 1 cut(s) 929
PspPPI RGGWCCY 1 cut(s) 929
PspXI VCTCGAGB 1 cut(s) 1254
PstI CTGCAG 1 cut(s) 1006
PsuI RGATCY 5 cut(s) 73, 342, 348, 1123, 1183
RsaI GTAC 5 cut(s) 180, 414, 437, 486, 545
RsaNI GTAC 5 cut(s) 179, 413, 436, 485, 544
SacI GAGCTC 2 cut(s) 394, 1356
SapI GCTCTTC 1 cut(s) 1403
SaqAI TTAA 2 cut(s) 620, 1119
SatI GCNGC 3 cut(s) 136, 1362, 1365
Sau96I GGNCC 1 cut(s) 929
ScaI AGTACT 1 cut(s) 180
SchI GAGTC 2 cut(s) 1171, 1334
ScrFI CCNGG 2 cut(s) 1278, 1333
SduI GDGCHC 4 cut(s) 394, 452, 823, 1356
SfaNI GCATC 1 cut(s) 1023
SfcI CTRYAG 1 cut(s) 1002
Sfr274I CTCGAG 2 cut(s) 318, 1254
SinI GGWCC 1 cut(s) 929
SlaI CTCGAG 2 cut(s) 318, 1254
SmlI CTYRAG 3 cut(s) 318, 709, 1254
SmoI CTYRAG 3 cut(s) 318, 709, 1254
Sse9I AATT 7 cut(s) 680, 863, 940, 953, 1069, 1155, 1268
SsiI CCGC 5 cut(s) 249, 1151, 1324, 1361, 1364
SspMI CTAG 6 cut(s) 155, 453, 933, 1038, 1074, 1473
SstI GAGCTC 2 cut(s) 394, 1356
StyD4I CCNGG 2 cut(s) 1276, 1331
StyI CCWWGG 4 cut(s) 356, 452, 925, 1191
TaaI ACNGT 6 cut(s) 38, 304, 440, 460, 805, 1312
TasI AATT 7 cut(s) 680, 863, 940, 953, 1069, 1155, 1268
TatI WGTACW 2 cut(s) 178, 412
TauI GCSGC 2 cut(s) 1364, 1367
TfiI GAWTC 9 cut(s) 121, 151, 165, 370, 579, 628, 639, 796, 1091
Tru1I TTAA 2 cut(s) 620, 1119
Tru9I TTAA 2 cut(s) 620, 1119
TscAI CASTG 2 cut(s) 1011, 1317
TseFI GTSAC 4 cut(s) 205, 469, 674, 1293
TseI GCWGC 1 cut(s) 135
Tsp45I GTSAC 4 cut(s) 205, 469, 674, 1293
TspDTI ATGAA 5 cut(s) 17, 113, 494, 876, 900
TspGWI ACGGA 5 cut(s) 87, 193, 341, 502, 531
TspRI CASTG 2 cut(s) 1011, 1317
VpaK11BI GGWCC 1 cut(s) 929
XapI RAATTY 2 cut(s) 1069, 1268
XbaI TCTAGA 1 cut(s) 1073
XhoI CTCGAG 2 cut(s) 318, 1254
XmaJI CCTAGG 1 cut(s) 452
XmiI GTMKAC 1 cut(s) 835
XspI CTAG 6 cut(s) 155, 453, 933, 1038, 1074, 1473
ZrmI AGTACT 1 cut(s) 180
Zsp2I ATGCAT 1 cut(s) 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.