Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012809

Physical Location & Seq

Genomic Coordinates Reverse (-)

143055 .. 144863

Gene Structure 1809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G01340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCGACGAGAACGGAATCGAAGAAGCAGATTCCGCCGTACATGAAAGCAGTCTCAGGCTCACTAGGCGGAGTGGTCGAGGCTTGTTGTCTCCAACCAATCGACGTAATCAAAACGCGTCTCCAGCTAGATCGCGTCGGCGCTTACAAAGGAATCGCTCACTGTGGTTCGAAGGTGGTTCGCACCGAAGGAGTTCGTGCTCTCTGGAAAGGCTTAACACCGTTCGCTACTCATCTCACGCTTAAGTACACGCTTCGGATGGGATCCAACGCCATGTTTCAAACCGCCTTTAAGGATTCCGAGACCGGAAAGGTCAGCAATCGTGGCCGTTTTCTTTCCGGATTCGGTGCCGGTGTTCTTGAAGCTCTCGCCATTGTTACACCCTTTGAGGTGGTGAAAATTAGACTTCAGCAGCAGAAAGGATTGAGTCCTGAGCTTTTCAAGTACAAAGGACCAATACATTGTGCTAGAACCATCGTGAGAGAAGAAAGCATACTTGGTTTATGGTCAGGTGCAGCACCGACGGTTATGCGAAACGGAACCAACCAAGCTGTAATGTTCACAGCGAAAAACGCGTTTGACATACTCTTGTGGAACAAACACGAAGGTGACGGTAAAATCTTGCAGCCATGGCAGTCAATGATCTCAGGGTTTTTAGCTGGAACCGCAGGTCCGTTCTGCACAGGACCGTTTGATGTGGTGAAAACGAGGTTGATGGCTCAGAGCAGAGACAGTGAAGGTGGGATTAGATATAAAGGGATGGTTCATGCCATTAGAACGATTTATGCAGAGGAAGGATTAGTGGCCTTATGGAGAGGGTTATTGCCGAGGCTAATGAGGATTCCTCCAGGACAAGCCATTATGTGGGCTGTTGCTGATCAAGTCACTGGTCTTTATGAGATGAGATATCTTCGGAATGCTCCTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0006839 GO:0006855 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015141 GO:0015238 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015741 GO:0015744 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071422 GO:0071702 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

309

Amino Acids

33.99

Weight (kDa)

9.93

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	10 - 99	9.2e-18	Mitochondrial carrier protein
Mito_carr	PF00153	108 - 199	4.6e-19	Mitochondrial carrier protein
Mito_carr	PF00153	209 - 299	4.3e-24	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01340
fragaria_vesca	FvH4_6g11130
malus_domestica	MD00G1062100.v1.1 MD12G1172100.v1.1
prunus_persica	Prupe.6G280400_v2.0.a1
pyrus_communis	pycom04g14300 pycom12g16330
rosa_chinensis	RchiOBHm_Chr3g0462571
rosa_laevigata	RLG00000024847
rosa_multiflora	Rmu_sc0002882.1_g000001 Rmu_sc0003624.1_g000023
rosa_roxburghii	Rroxscaffold_6G00417380
rosa_rugosa	Rorug03G0057600
rosa_samantha	Rh3AG115700 Rh3BG119200 Rh3CG122600 Rh3DG121300
rosa_wichuraiana	Rw3G009810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	659
AccB1I	GGYRCC	1 cut(s)	347
AccB7I	CCANNNNNTGG	1 cut(s)	864
AccII	CGCG	3 cut(s)	118, 135, 575
AccIII	TCCGGA	1 cut(s)	338
AciI	CCGC	4 cut(s)	35, 69, 285, 666
AclWI	GGATC	2 cut(s)	258, 271
AcoI	YGGCCR	1 cut(s)	325
AcuI	CTGAAG	1 cut(s)	392
AfaI	GTAC	3 cut(s)	41, 248, 446
AfiI	CCNNNNNNNGG	1 cut(s)	864
AflII	CTTAAG	1 cut(s)	242
AflIII	ACRYGT	2 cut(s)	116, 573
AgsI	TTSAA	3 cut(s)	281, 362, 442
AjnI	CCWGG	1 cut(s)	847
AjuI	GAANNNNNNNTTGG	2 cut(s)	480, 512
AleI	CACNNNNGTG	1 cut(s)	606
AloI	GAACNNNNNNTCC	2 cut(s)	655, 687
AluBI	AGCT	5 cut(s)	127, 365, 436, 551, 659
AluI	AGCT	5 cut(s)	127, 365, 436, 551, 659
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	5 cut(s)	58, 95, 125, 296, 723
AlwI	GGATC	2 cut(s)	258, 271
Aor13HI	TCCGGA	1 cut(s)	338
AoxI	GGCC	2 cut(s)	325, 804
ApeKI	GCWGC	3 cut(s)	412, 515, 625
Asp700I	GAANNNNTTC	1 cut(s)	192
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	3 cut(s)	452, 671, 686
AsuHPI	GGTGA	3 cut(s)	406, 620, 712
AsuII	TTCGAA	1 cut(s)	170
AvaII	GGWCC	3 cut(s)	452, 671, 686
BamHI	GGATCC	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	347
BarI	GAAGNNNNNNTAC	2 cut(s)	477, 509
Bbv12I	GWGCWC	1 cut(s)	202
BbvI	GCAGC	3 cut(s)	424, 527, 637
BccI	CCATC	4 cut(s)	253, 482, 709, 754
BceAI	ACGGC	2 cut(s)	22, 312
BcgI	CGANNNNNNTGC	2 cut(s)	511, 545
BciT130I	CCWGG	1 cut(s)	849
BclI	TGATCA	1 cut(s)	877
BcoDI	GTCTC	5 cut(s)	58, 95, 125, 296, 723
BfaI	CTAG	3 cut(s)	65, 128, 468
BfoI	RGCGCY	1 cut(s)	144
BfrI	CTTAAG	1 cut(s)	242
BfuAI	ACCTGC	1 cut(s)	659
BisI	GCNGC	3 cut(s)	413, 516, 626
BlsI	GCNGC	3 cut(s)	414, 517, 627
Bme1390I	CCNGG	1 cut(s)	849
Bme18I	GGWCC	3 cut(s)	452, 671, 686
BmgT120I	GGNCC	3 cut(s)	452, 671, 686
BmiI	GGNNCC	4 cut(s)	265, 349, 541, 664
BmrFI	CCNGG	1 cut(s)	849
BplI	GAGNNNNNCTC	2 cut(s)	829, 861
BpmI	CTGGAG	2 cut(s)	107, 831
Bpu10I	CCTNAGC	1 cut(s)	432
Bpu14I	TTCGAA	1 cut(s)	170
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	629, 827
BsaWI	WCCGGW	2 cut(s)	305, 338
Bsc4I	CCNNNNNNNGG	1 cut(s)	864
Bse118I	RCCGGY	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	892
BseAI	TCCGGA	1 cut(s)	338
BseBI	CCWGG	1 cut(s)	849
BseDI	CCNNGG	2 cut(s)	629, 827
BseGI	GGATG	2 cut(s)	264, 765
BseLI	CCNNNNNNNGG	1 cut(s)	864
BseMII	CTCAG	4 cut(s)	69, 423, 660, 734
BseNI	ACTGG	1 cut(s)	892
BseXI	GCAGC	3 cut(s)	424, 527, 637
BsgI	GTGCAG	2 cut(s)	534, 664
Bsh1236I	CGCG	3 cut(s)	118, 135, 575
BshFI	GGCC	2 cut(s)	327, 806
BshNI	GGYRCC	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	202
BsiSI	CCGG	3 cut(s)	306, 339, 351
BslI	CCNNNNNNNGG	1 cut(s)	864
BsmAI	GTCTC	5 cut(s)	58, 95, 125, 296, 723
BsmBI	CGTCTC	1 cut(s)	125
BsmI	GAATGC	1 cut(s)	922
BsnI	GGCC	2 cut(s)	327, 806
Bso31I	GGTCTC	1 cut(s)	296
Bsp119I	TTCGAA	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp13I	TCCGGA	1 cut(s)	338
Bsp143I	GATC	4 cut(s)	130, 263, 642, 877
Bsp19I	CCATGG	1 cut(s)	629
BspACI	CCGC	4 cut(s)	35, 69, 285, 666
BspANI	GGCC	2 cut(s)	327, 806
BspCNI	CTCAG	4 cut(s)	68, 424, 659, 733
BspEI	TCCGGA	1 cut(s)	338
BspFNI	CGCG	3 cut(s)	118, 135, 575
BspLI	GGNNCC	4 cut(s)	265, 349, 541, 664
BspMI	ACCTGC	1 cut(s)	659
BspPI	GGATC	2 cut(s)	258, 271
BspT104I	TTCGAA	1 cut(s)	170
BspT107I	GGYRCC	1 cut(s)	347
BspTI	CTTAAG	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	296
BsrFI	RCCGGY	1 cut(s)	350
BsrI	ACTGG	1 cut(s)	892
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	2 cut(s)	629, 827
BssMI	GATC	4 cut(s)	130, 263, 642, 877
BssT1I	CCWWGG	1 cut(s)	629
Bst2UI	CCWGG	1 cut(s)	849
Bst4CI	ACNGT	6 cut(s)	164, 222, 526, 614, 690, 734
BstAFI	CTTAAG	1 cut(s)	242
BstBI	TTCGAA	1 cut(s)	170
BstDEI	CTNAG	4 cut(s)	55, 432, 646, 720
BstDSI	CCRYGG	1 cut(s)	629
BstF5I	GGATG	2 cut(s)	264, 765
BstFNI	CGCG	3 cut(s)	118, 135, 575
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	4 cut(s)	133, 266, 645, 880
BstMAI	GTCTC	5 cut(s)	58, 95, 125, 296, 723
BstMBI	GATC	4 cut(s)	130, 263, 642, 877
BstMWI	GCNNNNNNNGC	7 cut(s)	34, 66, 124, 324, 572, 631, 665
BstNI	CCWGG	1 cut(s)	849
BstSCI	CCNGG	1 cut(s)	847
BstUI	CGCG	3 cut(s)	118, 135, 575
BstV1I	GCAGC	3 cut(s)	424, 527, 637
BstX2I	RGATCY	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	263
BsuRI	GGCC	2 cut(s)	327, 806
BtgI	CCRYGG	1 cut(s)	629
BtsCI	GGATG	2 cut(s)	264, 765
BtsIMutI	CAGTG	3 cut(s)	160, 739, 885
BveI	ACCTGC	1 cut(s)	659
CfoI	GCGC	1 cut(s)	143
Cfr10I	RCCGGY	1 cut(s)	350
Cfr13I	GGNCC	3 cut(s)	452, 671, 686
CseI	GACGC	2 cut(s)	107, 124
Csp6I	GTAC	3 cut(s)	40, 247, 445
CviAII	CATG	4 cut(s)	43, 274, 630, 767
CviQI	GTAC	3 cut(s)	40, 247, 445
DdeI	CTNAG	4 cut(s)	55, 432, 646, 720
DpnI	GATC	4 cut(s)	132, 265, 644, 879
DpnII	GATC	4 cut(s)	130, 263, 642, 877
EaeI	YGGCCR	1 cut(s)	325
EciI	GGCGGA	2 cut(s)	24, 84
Eco130I	CCWWGG	1 cut(s)	629
Eco31I	GGTCTC	1 cut(s)	296
Eco32I	GATATC	1 cut(s)	908
Eco47I	GGWCC	3 cut(s)	452, 671, 686
Eco57I	CTGAAG	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	847
EcoRV	GATATC	1 cut(s)	908
EcoT14I	CCWWGG	1 cut(s)	629
ErhI	CCWWGG	1 cut(s)	629
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	4 cut(s)	46, 277, 633, 770
FatI	CATG	4 cut(s)	42, 273, 629, 766
FbaI	TGATCA	1 cut(s)	877
Fnu4HI	GCNGC	3 cut(s)	413, 516, 626
FokI	GGATG	2 cut(s)	271, 772
Fsp4HI	GCNGC	3 cut(s)	413, 516, 626
FspBI	CTAG	3 cut(s)	65, 128, 468
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	3 cut(s)	413, 516, 626
GsuI	CTGGAG	2 cut(s)	107, 831
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	327, 806
HapII	CCGG	3 cut(s)	306, 339, 351
HgaI	GACGC	2 cut(s)	107, 124
HhaI	GCGC	1 cut(s)	143
Hin1II	CATG	4 cut(s)	46, 277, 633, 770
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HinfI	GANTC	7 cut(s)	17, 31, 153, 296, 342, 427, 841
HpaII	CCGG	3 cut(s)	306, 339, 351
HphI	GGTGA	3 cut(s)	406, 620, 712
Hpy166II	GTNNAC	2 cut(s)	249, 561
Hpy188I	TCNGA	4 cut(s)	258, 301, 723, 915
Hpy188III	TCNNGA	5 cut(s)	205, 339, 359, 431, 478
Hpy8I	GTNNAC	2 cut(s)	249, 561
Hpy99I	CGWCG	4 cut(s)	10, 107, 140, 526
HpyAV	CCTTC	5 cut(s)	166, 182, 599, 731, 788
HpyCH4III	ACNGT	6 cut(s)	164, 222, 526, 614, 690, 734
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	4 cut(s)	515, 625, 681, 788
HpyF10VI	GCNNNNNNNGC	7 cut(s)	34, 66, 124, 324, 572, 631, 665
HpyF3I	CTNAG	4 cut(s)	55, 432, 646, 720
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	4 cut(s)	46, 277, 633, 770
HspAI	GCGC	1 cut(s)	141
Kpn2I	TCCGGA	1 cut(s)	338
Ksp22I	TGATCA	1 cut(s)	877
Kzo9I	GATC	4 cut(s)	130, 263, 642, 877
LmnI	GCTCC	1 cut(s)	925
Lsp1109I	GCAGC	3 cut(s)	424, 527, 637
MaeI	CTAG	3 cut(s)	65, 128, 468
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	3 cut(s)	376, 608, 883
MalI	GATC	4 cut(s)	132, 265, 644, 879
MboI	GATC	4 cut(s)	130, 263, 642, 877
MboII	GAAGA	3 cut(s)	34, 497, 902
MflI	RGATCY	1 cut(s)	263
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	1 cut(s)	399
MluI	ACGCGT	2 cut(s)	116, 573
MlyI	GAGTC	1 cut(s)	436
MmeI	TCCRAC	2 cut(s)	118, 291
MnlI	CCTC	8 cut(s)	73, 382, 702, 784, 809, 822, 831, 855
MroI	TCCGGA	1 cut(s)	338
MroXI	GAANNNNTTC	1 cut(s)	192
MseI	TTAA	3 cut(s)	215, 243, 291
MslI	CAYNNNNRTG	1 cut(s)	606
MspCI	CTTAAG	1 cut(s)	242
MspI	CCGG	3 cut(s)	306, 339, 351
MspR9I	CCNGG	1 cut(s)	849
Mva1269I	GAATGC	1 cut(s)	922
MvaI	CCWGG	1 cut(s)	849
MvnI	CGCG	3 cut(s)	118, 135, 575
MwoI	GCNNNNNNNGC	7 cut(s)	34, 66, 124, 324, 572, 631, 665
NcoI	CCATGG	1 cut(s)	629
NdeII	GATC	4 cut(s)	130, 263, 642, 877
NlaIII	CATG	4 cut(s)	46, 277, 633, 770
NlaIV	GGNNCC	4 cut(s)	265, 349, 541, 664
NmeAIII	GCCGAG	1 cut(s)	852
NmuCI	GTSAC	2 cut(s)	608, 883
NspV	TTCGAA	1 cut(s)	170
OliI	CACNNNNGTG	1 cut(s)	606
PctI	GAATGC	1 cut(s)	922
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	6 cut(s)	17, 31, 153, 296, 342, 841
PflMI	CCANNNNNTGG	1 cut(s)	864
PfoI	TCCNGGA	1 cut(s)	847
PkrI	GCNGC	3 cut(s)	414, 517, 627
PleI	GAGTC	1 cut(s)	435
PpsI	GAGTC	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	847
PspGI	CCWGG	1 cut(s)	847
PspN4I	GGNNCC	4 cut(s)	265, 349, 541, 664
PspPI	GGNCC	3 cut(s)	452, 671, 686
PsuI	RGATCY	1 cut(s)	263
RsaI	GTAC	3 cut(s)	41, 248, 446
RsaNI	GTAC	3 cut(s)	40, 247, 445
RseI	CAYNNNNRTG	1 cut(s)	606
SaqAI	TTAA	3 cut(s)	215, 243, 291
SatI	GCNGC	3 cut(s)	413, 516, 626
Sau3AI	GATC	4 cut(s)	130, 263, 642, 877
Sau96I	GGNCC	3 cut(s)	452, 671, 686
SchI	GAGTC	1 cut(s)	436
ScrFI	CCNGG	1 cut(s)	849
SduI	GDGCHC	1 cut(s)	202
SfuI	TTCGAA	1 cut(s)	170
SinI	GGWCC	3 cut(s)	452, 671, 686
SmiMI	CAYNNNNRTG	1 cut(s)	606
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	1 cut(s)	399
SsiI	CCGC	4 cut(s)	35, 69, 285, 666
SspMI	CTAG	3 cut(s)	65, 128, 468
StyD4I	CCNGG	1 cut(s)	847
StyI	CCWWGG	1 cut(s)	629
TaaI	ACNGT	6 cut(s)	164, 222, 526, 614, 690, 734
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	4 cut(s)	20, 78, 102, 170
TasI	AATT	1 cut(s)	399
TatI	WGTACW	2 cut(s)	246, 444
TfiI	GAWTC	6 cut(s)	17, 31, 153, 296, 342, 841
Tru1I	TTAA	3 cut(s)	215, 243, 291
Tru9I	TTAA	3 cut(s)	215, 243, 291
TscAI	CASTG	3 cut(s)	167, 739, 892
TseFI	GTSAC	2 cut(s)	608, 883
TseI	GCWGC	3 cut(s)	412, 515, 625
Tsp45I	GTSAC	2 cut(s)	608, 883
TspDTI	ATGAA	2 cut(s)	59, 755
TspGWI	ACGGA	3 cut(s)	29, 552, 663
TspRI	CASTG	3 cut(s)	167, 739, 892
Van91I	CCANNNNNTGG	1 cut(s)	864
Vha464I	CTTAAG	1 cut(s)	242
VpaK11BI	GGWCC	3 cut(s)	452, 671, 686
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	3 cut(s)	65, 128, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.