MD12G1172100.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
25244617 .. 25246841
2225 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1172100.v1.1.491

Sequence Viewer

Length: 978 bp
ATGGAAGAAAACCGAAATGAAAACCCCAATCCGACGAGCCCACCACAGCCGCCGCCGCCGCCGCCCAAGAAGCCGCCGATTCCGCCGTACGTGAAGGCCCTGTCGGGTTCGCTCGGCGGCATCATGGAGGCCGCGTGCCTACAGCCCATCGATGTCATCAAGACCCGGCTCCAGCTCGACCGGACCGGCACCTACAAGGGAATCATCCACTGCGGCGCCACCGTTGCCCGCACCGAGGGAGTCCGGGCTCTCTGGAAGGGCCTGACCCCCTTCGCCACCCACCTGACCTTGAAGTACGCGCTTCGGATGGGCTCCAACGCCGTGCTGCAGGGCGCGTTTAAGGACGCGGAGACCGGGAAGGTCAGCAACCATGGCCGGCTCATTTCTGGGTTCGGAGCTGGAGTTCTCGAAGCTCTCGTCATTGTCACGCCGTTTGAGGTGGTGAAAATTAGACTACAGCAGCAGAAAGGATTGAGTCTTGGGCTTCTGAAGTATAAGGGTCCTATTCACTGTGCTCGTACGATCATTCGGGAGGAAGGTATCCGTGGGCTTTGGTCAGGTGCTGCTCCGACTGTTATGCGCAATGGCACGAACCAGGCTGCCATGTTTACAGCCAAAAATGCGTTCGATGTTCTCTTGTGGAAGAAACATGAAGGAGATGGGAGAGTCCTGCTGCCATGGCAATCTATGATATCTGGTTTCCTTGCAGGCACAGCCGGCCCCATTTGCACGGGTCCCTTTGATGTTGTGAAAACGAGGCTGATGGCTCAGAGCCGAGGTGTGGATGGCAAGATGAAATACAAGGGCATGATTCATGCGATCAGGACAATATACGCAGAGGAAGGGCTTCTGGCTTTGTGGAAAGGACTCCTGCCTCGGCTCATGAGGATACCACCCGGGCAAGCCATTATGTGGACTGTGGCTGACCAAGTGATAGGATTGTATGAGAAACGATATCTTCGTAATGCACCCTTGTAG

Protein Analysis

326

Amino Acids

35.43

Weight (kDa)

10.01

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 28 - 113 2.4e-17 Mitochondrial carrier protein
Mito_carr PF00153 122 - 216 1.2e-20 Mitochondrial carrier protein
Mito_carr PF00153 226 - 316 9.5e-24 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012809)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 581
AccB1I GGYRCC 2 cut(s) 188, 215
AccB7I CCANNNNNTGG 1 cut(s) 912
AccII CGCG 4 cut(s) 134, 299, 335, 347
AcoI YGGCCR 1 cut(s) 373
AcuI CTGAAG 1 cut(s) 509
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 3 cut(s) 89, 296, 520
AfiI CCNNNNNNNGG 3 cut(s) 235, 781, 912
AgsI TTSAA 1 cut(s) 292
AjnI CCWGG 1 cut(s) 594
AjuI GAANNNNNNNTTGG 2 cut(s) 608, 640
AloI GAACNNNNNNTCC 2 cut(s) 387, 419
AluBI AGCT 3 cut(s) 175, 398, 413
AluI AGCT 3 cut(s) 175, 398, 413
Alw21I GWGCWC 1 cut(s) 517
Alw26I GTCTC 1 cut(s) 344
AlwNI CAGNNNCTG 1 cut(s) 563
Ama87I CYCGRG 1 cut(s) 896
AoxI GGCC 5 cut(s) 96, 129, 259, 373, 718
ApeKI GCWGC 5 cut(s) 325, 460, 563, 599, 673
ArsI GACNNNNNNTTYG 2 cut(s) 402, 434
Asp700I GAANNNNTTC 1 cut(s) 846
AspLEI GCGC 4 cut(s) 218, 301, 335, 582
AspS9I GGNCC 6 cut(s) 97, 183, 259, 500, 719, 734
AsuC2I CCSGG 5 cut(s) 166, 245, 355, 897, 898
AsuHPI GGTGA 1 cut(s) 454
AvaI CYCGRG 1 cut(s) 896
AvaII GGWCC 3 cut(s) 183, 500, 734
BanI GGYRCC 2 cut(s) 188, 215
BanII GRGCYC 3 cut(s) 41, 250, 314
Bbv12I GWGCWC 1 cut(s) 517
BbvI GCAGC 5 cut(s) 312, 472, 550, 586, 660
BccI CCATC 5 cut(s) 155, 301, 653, 757, 779
BceAI ACGGC 3 cut(s) 70, 305, 415
BcgI CGANNNNNNTGC 2 cut(s) 559, 593
BciT130I CCWGG 1 cut(s) 596
BciVI GTATCC 2 cut(s) 551, 882
BcnI CCSGG 5 cut(s) 166, 245, 355, 897, 898
BcoDI GTCTC 1 cut(s) 344
BfmI CTRYAG 3 cut(s) 140, 326, 455
BfoI RGCGCY 1 cut(s) 219
BfuI GTATCC 2 cut(s) 551, 882
Bme1390I CCNGG 6 cut(s) 166, 245, 355, 596, 897, 898
Bme18I GGWCC 3 cut(s) 183, 500, 734
BmeT110I CYCGRG 1 cut(s) 896
BmgT120I GGNCC 6 cut(s) 97, 183, 259, 500, 719, 734
BmiI GGNNCC 8 cut(s) 170, 190, 217, 313, 501, 721, 735, 736
BmrFI CCNGG 6 cut(s) 166, 245, 355, 596, 897, 898
BmsI GCATC 1 cut(s) 129
BpmI CTGGAG 2 cut(s) 155, 420
BpuMI CCSGG 5 cut(s) 166, 245, 355, 897, 898
Bsa29I ATCGAT 1 cut(s) 150
BsaAI YACGTR 1 cut(s) 91
BsaHI GRCGYC 1 cut(s) 216
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 7 cut(s) 234, 370, 544, 677, 775, 875, 896
BsaWI WCCGGW 1 cut(s) 180
BsaXI ACNNNNNCTCC 4 cut(s) 119, 149, 387, 417
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 781, 912
Bse118I RCCGGY 3 cut(s) 185, 375, 716
Bse3DI GCAATG 1 cut(s) 589
BseBI CCWGG 1 cut(s) 596
BseCI ATCGAT 1 cut(s) 150
BseDI CCNNGG 7 cut(s) 234, 370, 544, 677, 775, 875, 896
BseGI GGATG 3 cut(s) 204, 312, 790
BseLI CCNNNNNNNGG 3 cut(s) 235, 781, 912
BseMI GCAATG 1 cut(s) 589
BseMII CTCAG 1 cut(s) 782
BseXI GCAGC 5 cut(s) 312, 472, 550, 586, 660
Bsh1236I CGCG 4 cut(s) 134, 299, 335, 347
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 5 cut(s) 98, 131, 261, 375, 720
BshNI GGYRCC 2 cut(s) 188, 215
BshVI ATCGAT 1 cut(s) 150
BsiEI CGRYCG 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 517
BsiHKCI CYCGRG 1 cut(s) 896
BsiSI CCGG 8 cut(s) 166, 181, 186, 244, 354, 376, 717, 897
BsiWI CGTACG 2 cut(s) 87, 518
BslFI GGGAC 1 cut(s) 720
BslI CCNNNNNNNGG 3 cut(s) 235, 781, 912
BsmAI GTCTC 1 cut(s) 344
BsmFI GGGAC 1 cut(s) 720
BsnI GGCC 5 cut(s) 98, 131, 261, 375, 720
Bso31I GGTCTC 1 cut(s) 344
BsoBI CYCGRG 1 cut(s) 896
Bsp1286I GDGCHC 4 cut(s) 41, 250, 314, 517
Bsp143I GATC 2 cut(s) 522, 819
Bsp19I CCATGG 2 cut(s) 370, 677
BspANI GGCC 5 cut(s) 98, 131, 261, 375, 720
BspCNI CTCAG 1 cut(s) 781
BspDI ATCGAT 1 cut(s) 150
BspFNI CGCG 4 cut(s) 134, 299, 335, 347
BspHI TCATGA 1 cut(s) 882
BspLI GGNNCC 8 cut(s) 170, 190, 217, 313, 501, 721, 735, 736
BspMAI CTGCAG 1 cut(s) 330
BspT107I GGYRCC 2 cut(s) 188, 215
BspTNI GGTCTC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 589
BsrFI RCCGGY 3 cut(s) 185, 375, 716
BssAI RCCGGY 3 cut(s) 185, 375, 716
BssECI CCNNGG 7 cut(s) 234, 370, 544, 677, 775, 875, 896
BssMI GATC 2 cut(s) 522, 819
BssNI GRCGYC 1 cut(s) 216
BssT1I CCWWGG 2 cut(s) 370, 677
Bst2UI CCWGG 1 cut(s) 596
Bst4CI ACNGT 4 cut(s) 223, 512, 574, 919
BstACI GRCGYC 1 cut(s) 216
BstBAI YACGTR 1 cut(s) 91
BstC8I GCNNGC 6 cut(s) 136, 229, 377, 709, 718, 903
BstDEI CTNAG 1 cut(s) 768
BstDSI CCRYGG 3 cut(s) 370, 544, 677
BstF5I GGATG 3 cut(s) 204, 312, 790
BstFNI CGCG 4 cut(s) 134, 299, 335, 347
BstH2I RGCGCY 1 cut(s) 219
BstHHI GCGC 4 cut(s) 218, 301, 335, 582
BstKTI GATC 2 cut(s) 525, 822
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 2 cut(s) 522, 819
BstMCI CGRYCG 1 cut(s) 181
BstNI CCWGG 1 cut(s) 596
BstSCI CCNGG 6 cut(s) 164, 243, 353, 594, 895, 896
BstSFI CTRYAG 3 cut(s) 140, 326, 455
BstUI CGCG 4 cut(s) 134, 299, 335, 347
BstV1I GCAGC 5 cut(s) 312, 472, 550, 586, 660
Bsu15I ATCGAT 1 cut(s) 150
BsuI GTATCC 2 cut(s) 551, 882
BsuRI GGCC 5 cut(s) 98, 131, 261, 375, 720
BsuTUI ATCGAT 1 cut(s) 150
BtgI CCRYGG 3 cut(s) 370, 544, 677
BtsCI GGATG 3 cut(s) 204, 312, 790
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 2 cut(s) 208, 508
Cac8I GCNNGC 6 cut(s) 136, 229, 377, 709, 718, 903
CaiI CAGNNNCTG 1 cut(s) 563
CciI TCATGA 1 cut(s) 882
CfoI GCGC 4 cut(s) 218, 301, 335, 582
Cfr10I RCCGGY 3 cut(s) 185, 375, 716
Cfr13I GGNCC 6 cut(s) 97, 183, 259, 500, 719, 734
Cfr9I CCCGGG 1 cut(s) 896
ClaI ATCGAT 1 cut(s) 150
CpoI CGGWCCG 1 cut(s) 183
CseI GACGC 1 cut(s) 353
Csp6I GTAC 3 cut(s) 88, 295, 519
CspI CGGWCCG 1 cut(s) 183
CviAII CATG 8 cut(s) 124, 371, 604, 650, 678, 808, 815, 883
CviQI GTAC 3 cut(s) 88, 295, 519
DdeI CTNAG 1 cut(s) 768
DinI GGCGCC 1 cut(s) 217
DpnI GATC 2 cut(s) 524, 821
DpnII GATC 2 cut(s) 522, 819
EaeI YGGCCR 1 cut(s) 373
EciI GGCGGA 1 cut(s) 72
Eco130I CCWWGG 2 cut(s) 370, 677
Eco24I GRGCYC 3 cut(s) 41, 250, 314
Eco31I GGTCTC 1 cut(s) 344
Eco32I GATATC 2 cut(s) 693, 956
Eco47I GGWCC 3 cut(s) 183, 500, 734
Eco57I CTGAAG 1 cut(s) 509
Eco88I CYCGRG 1 cut(s) 896
EcoO109I RGGNCCY 4 cut(s) 97, 259, 500, 734
EcoRII CCWGG 1 cut(s) 594
EcoRV GATATC 2 cut(s) 693, 956
EcoT14I CCWWGG 2 cut(s) 370, 677
EcoT38I GRGCYC 3 cut(s) 41, 250, 314
EgeI GGCGCC 1 cut(s) 217
EheI GGCGCC 1 cut(s) 217
ErhI CCWWGG 2 cut(s) 370, 677
FaeI CATG 8 cut(s) 127, 374, 607, 653, 681, 811, 818, 886
FaqI GGGAC 1 cut(s) 720
FatI CATG 8 cut(s) 123, 370, 603, 649, 677, 807, 814, 882
FauI CCCGC 1 cut(s) 236
FokI GGATG 3 cut(s) 191, 319, 797
FriOI GRGCYC 3 cut(s) 41, 250, 314
FspI TGCGCA 1 cut(s) 581
GlaI GCGC 4 cut(s) 217, 300, 334, 581
GsuI CTGGAG 2 cut(s) 155, 420
HaeII RGCGCY 1 cut(s) 219
HaeIII GGCC 5 cut(s) 98, 131, 261, 375, 720
HapII CCGG 8 cut(s) 166, 181, 186, 244, 354, 376, 717, 897
HgaI GACGC 1 cut(s) 353
HhaI GCGC 4 cut(s) 218, 301, 335, 582
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 8 cut(s) 127, 374, 607, 653, 681, 811, 818, 886
Hin6I GCGC 4 cut(s) 216, 299, 333, 580
HinP1I GCGC 4 cut(s) 216, 299, 333, 580
HinfI GANTC 7 cut(s) 79, 201, 240, 475, 666, 811, 867
HpaII CCGG 8 cut(s) 166, 181, 186, 244, 354, 376, 717, 897
HphI GGTGA 1 cut(s) 454
Hpy166II GTNNAC 2 cut(s) 609, 915
Hpy188I TCNGA 6 cut(s) 33, 306, 395, 489, 570, 771
Hpy188III TCNNGA 6 cut(s) 160, 253, 407, 530, 823, 883
Hpy8I GTNNAC 2 cut(s) 609, 915
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 7 cut(s) 88, 250, 280, 352, 530, 647, 836
HpyCH4III ACNGT 4 cut(s) 223, 512, 574, 919
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 4 cut(s) 328, 707, 729, 968
HpyF3I CTNAG 1 cut(s) 768
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 8 cut(s) 127, 374, 607, 653, 681, 811, 818, 886
HspAI GCGC 4 cut(s) 216, 299, 333, 580
KasI GGCGCC 1 cut(s) 215
KflI GGGWCCC 1 cut(s) 734
KroI GCCGGC 2 cut(s) 375, 716
KroNI GCCGGC 2 cut(s) 377, 718
Kzo9I GATC 2 cut(s) 522, 819
LmnI GCTCC 4 cut(s) 174, 317, 395, 571
Lsp1109I GCAGC 5 cut(s) 312, 472, 550, 586, 660
LweI GCATC 1 cut(s) 129
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 424
MalI GATC 2 cut(s) 524, 821
MboI GATC 2 cut(s) 522, 819
MboII GAAGA 3 cut(s) 17, 655, 950
MhlI GDGCHC 4 cut(s) 41, 250, 314, 517
MluCI AATT 1 cut(s) 447
Mly113I GGCGCC 1 cut(s) 216
MlyI GAGTC 4 cut(s) 249, 484, 675, 861
MmeI TCCRAC 3 cut(s) 56, 339, 593
MnlI CCTC 9 cut(s) 121, 229, 430, 526, 750, 770, 832, 879, 885
MroNI GCCGGC 2 cut(s) 375, 716
MroXI GAANNNNTTC 1 cut(s) 846
MseI TTAA 1 cut(s) 339
MspI CCGG 8 cut(s) 166, 181, 186, 244, 354, 376, 717, 897
MspR9I CCNGG 6 cut(s) 166, 245, 355, 596, 897, 898
MvaI CCWGG 1 cut(s) 596
MvnI CGCG 4 cut(s) 134, 299, 335, 347
NaeI GCCGGC 2 cut(s) 377, 718
NarI GGCGCC 1 cut(s) 216
NciI CCSGG 5 cut(s) 166, 245, 355, 897, 898
NcoI CCATGG 2 cut(s) 370, 677
NdeII GATC 2 cut(s) 522, 819
NgoMIV GCCGGC 2 cut(s) 375, 716
NlaIII CATG 8 cut(s) 127, 374, 607, 653, 681, 811, 818, 886
NlaIV GGNNCC 8 cut(s) 170, 190, 217, 313, 501, 721, 735, 736
NmeAIII GCCGAG 3 cut(s) 93, 800, 856
NmuCI GTSAC 1 cut(s) 424
NsbI TGCGCA 1 cut(s) 581
PagI TCATGA 1 cut(s) 882
PcsI WCGNNNNNNNCGW 2 cut(s) 414, 958
PdiI GCCGGC 2 cut(s) 377, 718
PdmI GAANNNNTTC 1 cut(s) 846
PfeI GAWTC 3 cut(s) 79, 201, 811
Pfl23II CGTACG 2 cut(s) 87, 518
PflMI CCANNNNNTGG 1 cut(s) 912
PleI GAGTC 4 cut(s) 248, 483, 674, 861
PluTI GGCGCC 1 cut(s) 219
PpsI GAGTC 4 cut(s) 248, 483, 674, 861
Ppu21I YACGTR 1 cut(s) 91
PpuMI RGGWCCY 2 cut(s) 500, 734
Psp5II RGGWCCY 2 cut(s) 500, 734
Psp6I CCWGG 1 cut(s) 594
PspGI CCWGG 1 cut(s) 594
PspLI CGTACG 2 cut(s) 87, 518
PspN4I GGNNCC 8 cut(s) 170, 190, 217, 313, 501, 721, 735, 736
PspPI GGNCC 6 cut(s) 97, 183, 259, 500, 719, 734
PspPPI RGGWCCY 2 cut(s) 500, 734
PstI CTGCAG 1 cut(s) 330
PstNI CAGNNNCTG 1 cut(s) 563
RsaI GTAC 3 cut(s) 89, 296, 520
RsaNI GTAC 3 cut(s) 88, 295, 519
Rsr2I CGGWCCG 1 cut(s) 183
RsrII CGGWCCG 1 cut(s) 183
SaqAI TTAA 1 cut(s) 339
Sau3AI GATC 2 cut(s) 522, 819
Sau96I GGNCC 6 cut(s) 97, 183, 259, 500, 719, 734
SchI GAGTC 4 cut(s) 249, 484, 675, 861
ScrFI CCNGG 6 cut(s) 166, 245, 355, 596, 897, 898
SduI GDGCHC 4 cut(s) 41, 250, 314, 517
SfaNI GCATC 1 cut(s) 129
SfcI CTRYAG 3 cut(s) 140, 326, 455
SfoI GGCGCC 1 cut(s) 217
SinI GGWCC 3 cut(s) 183, 500, 734
SmaI CCCGGG 1 cut(s) 898
Sse9I AATT 1 cut(s) 447
SspDI GGCGCC 1 cut(s) 215
StyD4I CCNGG 6 cut(s) 164, 243, 353, 594, 895, 896
StyI CCWWGG 2 cut(s) 370, 677
TaaI ACNGT 4 cut(s) 223, 512, 574, 919
TaiI ACGT 1 cut(s) 93
TaqI TCGA 4 cut(s) 150, 177, 408, 627
TasI AATT 1 cut(s) 447
TauI GCSGC 9 cut(s) 52, 55, 58, 61, 64, 76, 120, 134, 216
TfiI GAWTC 3 cut(s) 79, 201, 811
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 2 cut(s) 215, 515
TseFI GTSAC 1 cut(s) 424
TseI GCWGC 5 cut(s) 325, 460, 563, 599, 673
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 4 cut(s) 33, 666, 803, 809
TspGWI ACGGA 1 cut(s) 533
TspMI CCCGGG 1 cut(s) 896
TspRI CASTG 2 cut(s) 215, 515
Van91I CCANNNNNTGG 1 cut(s) 912
VpaK11BI GGWCC 3 cut(s) 183, 500, 734
XmaI CCCGGG 1 cut(s) 896
XmnI GAANNNNTTC 1 cut(s) 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.