Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007557

Physical Location & Seq

Genomic Coordinates Reverse (-)

4347957 .. 4352217

Gene Structure 4261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0057600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTATTTTGGTTCATCAATGGTCTTTTGGTGTTTGGTTAAATTTTTTGGCCCCCATACATATATATTCCTCCCTCCGCCACTGCATAGACTGGCATCCAAGTTATTATACCAAGATTCAATCAAATACCAACTGATAACAAATATACGCTTGAACATGAGATCTGCAGGGGCACTGGATAGCATGGTTGTACTCTCGGAGACTTTCTCATCTTTGGGGTTGGAGGACTCTGCAGCAGGACATTCAGGAAAACCACGAGTTTTATCGGTCCTCTCTTCAATTCTGGAGGGATCAGTTCGAAAGAATGAGAGATTAGTAAGGCAATCAAAGATGAAGGACGTTATTACAATGTTCCATGCCTCAGAAGTTCCTGCCTTAAGCATTAGAAAGTATATTGAGCGCATCTTCAAGTACTCAAGCTGCAGCAACTCTTGCTTTGTTGTTGCATACATATACATCGAAAGATTTCTACAACGTACTGGGACTTGTCTCACTTCTCTCAACGTTCACCGGCTTTTAATCACCAGCATTCTGATTGCTGCAAAATTTATGGATGACGATTGTTATAGCAATGGCTACTATGCCAAAGTGGGAGGAGTGAGCACAGCAGAGATGAACAACATGGAGATGGCATTTTTGCTGAGTTTGGATTTCAAACTCTATGTCACCACAGAGATGTTTGGGAAGTATTGTCAGCAACTTGAAGATGTGGGAAGGTACCGAAGACATGGGCACTTTTTAAGGTTAAGACAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0006839 GO:0006855 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015141 GO:0015238 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015741 GO:0015744 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071422 GO:0071702 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

252

Amino Acids

28.9

Weight (kDa)

9.33

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin	PF08613	109 - 220	2.7e-37	Cyclin
Cyclin_N	PF00134	130 - 220	2.1e-11	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007557)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0233381 RchiOBHm_Chr7g0233401
rosa_laevigata	RLG00000001273 RLG00000024849
rosa_multiflora	Rmu_sc0003624.1_g000022 Rmu_sc0006414.1_g000014 Rmu_sc0008806.1_g000008 Rmu_sc0017965.1_g000001 Rmu_sc0024703.1_g000004 Rmu_sc0036637.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417400
rosa_rugosa	Rorug03G0057600
rosa_samantha	Rh3BG119000 Rh3CG122400 Rh3DG121100 Rh4BG223600 Rh4DG220700 Rh7AG436200 Rh7CG455600 Rh7CG455900
rosa_wichuraiana	Rw3G009790 Rw4G019070 Rw7G035940 Rw7G035950 Rw7G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	717
AccB1I	GGYRCC	1 cut(s)	717
AciI	CCGC	1 cut(s)	77
AclI	AACGTT	1 cut(s)	504
AclWI	GGATC	1 cut(s)	298
AcsI	RAATTY	2 cut(s)	41, 545
AfaI	GTAC	4 cut(s)	192, 413, 478, 719
AflII	CTTAAG	1 cut(s)	376
AgsI	TTSAA	6 cut(s)	120, 154, 279, 409, 655, 704
AluBI	AGCT	1 cut(s)	420
AluI	AGCT	1 cut(s)	420
Alw21I	GWGCWC	1 cut(s)	605
Alw26I	GTCTC	2 cut(s)	194, 494
AlwI	GGATC	1 cut(s)	298
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	4 cut(s)	233, 420, 423, 539
ApoI	RAATTY	2 cut(s)	41, 545
ArsI	GACNNNNNNTTYG	2 cut(s)	648, 680
Asp700I	GAANNNNTTC	1 cut(s)	465
Asp718I	GGTACC	1 cut(s)	717
AspLEI	GCGC	1 cut(s)	402
AspS9I	GGNCC	2 cut(s)	50, 268
AsuHPI	GGTGA	3 cut(s)	500, 514, 658
AsuII	TTCGAA	1 cut(s)	298
AvaII	GGWCC	1 cut(s)	268
BaeGI	GKGCMC	2 cut(s)	175, 735
BanI	GGYRCC	1 cut(s)	717
BauI	CACGAG	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	730
Bbv12I	GWGCWC	1 cut(s)	605
BbvI	GCAGC	4 cut(s)	245, 407, 435, 526
BccI	CCATC	1 cut(s)	622
BcoDI	GTCTC	2 cut(s)	194, 494
BfmI	CTRYAG	3 cut(s)	165, 231, 421
BfrI	CTTAAG	1 cut(s)	376
BglII	AGATCT	1 cut(s)	161
BisI	GCNGC	4 cut(s)	234, 421, 424, 540
BlsI	GCNGC	4 cut(s)	235, 422, 425, 541
BmcAI	AGTACT	1 cut(s)	413
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	2 cut(s)	50, 268
BmiI	GGNNCC	2 cut(s)	52, 719
BmrI	ACTGGG	1 cut(s)	489
BmsI	GCATC	2 cut(s)	104, 411
BmuI	ACTGGG	1 cut(s)	489
BpiI	GAAGAC	1 cut(s)	730
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
BpmI	CTGGAG	1 cut(s)	305
Bpu14I	TTCGAA	1 cut(s)	298
BpuEI	CTTGAG	1 cut(s)	400
Bse118I	RCCGGY	1 cut(s)	510
Bse1I	ACTGG	3 cut(s)	96, 180, 484
Bse3DI	GCAATG	1 cut(s)	577
BseGI	GGATG	2 cut(s)	95, 559
BseMI	GCAATG	1 cut(s)	577
BseMII	CTCAG	2 cut(s)	375, 632
BseNI	ACTGG	3 cut(s)	96, 180, 484
BseRI	GAGGAG	1 cut(s)	609
BseSI	GKGCMC	2 cut(s)	175, 735
BseXI	GCAGC	4 cut(s)	245, 407, 435, 526
BshFI	GGCC	1 cut(s)	51
BshNI	GGYRCC	1 cut(s)	717
BsiHKAI	GWGCWC	1 cut(s)	605
BsiSI	CCGG	1 cut(s)	511
BslFI	GGGAC	1 cut(s)	496
BsmAI	GTCTC	2 cut(s)	194, 494
BsmFI	GGGAC	1 cut(s)	496
BsmI	GAATGC	1 cut(s)	528
BsnI	GGCC	1 cut(s)	51
Bsp119I	TTCGAA	1 cut(s)	298
Bsp1286I	GDGCHC	3 cut(s)	175, 605, 735
Bsp143I	GATC	2 cut(s)	161, 290
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	2 cut(s)	374, 633
BspLI	GGNNCC	2 cut(s)	52, 719
BspMAI	CTGCAG	3 cut(s)	169, 235, 425
BspPI	GGATC	1 cut(s)	298
BspT104I	TTCGAA	1 cut(s)	298
BspT107I	GGYRCC	1 cut(s)	717
BspTI	CTTAAG	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	577
BsrFI	RCCGGY	1 cut(s)	510
BsrI	ACTGG	3 cut(s)	96, 180, 484
BssAI	RCCGGY	1 cut(s)	510
BssMI	GATC	2 cut(s)	161, 290
BssSI	CACGAG	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	280
BstAFI	CTTAAG	1 cut(s)	376
BstAPI	GCANNNNNTGC	1 cut(s)	432
BstBI	TTCGAA	1 cut(s)	298
BstDEI	CTNAG	2 cut(s)	361, 641
BstF5I	GGATG	2 cut(s)	95, 559
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	2 cut(s)	164, 293
BstMAI	GTCTC	2 cut(s)	194, 494
BstMBI	GATC	2 cut(s)	161, 290
BstMWI	GCNNNNNNNGC	1 cut(s)	432
BstSFI	CTRYAG	3 cut(s)	165, 231, 421
BstSLI	GKGCMC	2 cut(s)	175, 735
BstV1I	GCAGC	4 cut(s)	245, 407, 435, 526
BstV2I	GAAGAC	1 cut(s)	730
BstX2I	RGATCY	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	51
BtsCI	GGATG	2 cut(s)	95, 559
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	2 cut(s)	80, 173
CfoI	GCGC	1 cut(s)	402
Cfr10I	RCCGGY	1 cut(s)	510
Cfr13I	GGNCC	2 cut(s)	50, 268
Csp6I	GTAC	4 cut(s)	191, 412, 477, 718
CviAII	CATG	5 cut(s)	157, 184, 356, 622, 728
CviJI	RGCY	4 cut(s)	51, 420, 514, 576
CviKI_1	RGCY	4 cut(s)	51, 420, 514, 576
CviQI	GTAC	4 cut(s)	191, 412, 477, 718
DdeI	CTNAG	2 cut(s)	361, 641
DpnI	GATC	2 cut(s)	163, 292
DpnII	GATC	2 cut(s)	161, 290
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
EciI	GGCGGA	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	268
FaeI	CATG	5 cut(s)	160, 187, 359, 625, 731
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	5 cut(s)	156, 183, 355, 621, 727
Fnu4HI	GCNGC	4 cut(s)	234, 421, 424, 540
FokI	GGATG	2 cut(s)	82, 566
Fsp4HI	GCNGC	4 cut(s)	234, 421, 424, 540
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	4 cut(s)	234, 421, 424, 540
GsuI	CTGGAG	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	1 cut(s)	511
HhaI	GCGC	1 cut(s)	402
Hin1II	CATG	5 cut(s)	160, 187, 359, 625, 731
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HinfI	GANTC	2 cut(s)	116, 227
HpaII	CCGG	1 cut(s)	511
HphI	GGTGA	3 cut(s)	500, 514, 658
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	3 cut(s)	199, 364, 534
Hpy188III	TCNNGA	2 cut(s)	246, 284
Hpy8I	GTNNAC	1 cut(s)	508
HpyAV	CCTTC	2 cut(s)	328, 708
HpyCH4IV	ACGT	3 cut(s)	339, 475, 504
HpyCH4V	TGCA	6 cut(s)	85, 167, 233, 423, 446, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	432
HpyF3I	CTNAG	2 cut(s)	361, 641
HpySE526I	ACGT	3 cut(s)	339, 475, 504
Hsp92II	CATG	5 cut(s)	160, 187, 359, 625, 731
HspAI	GCGC	1 cut(s)	400
KpnI	GGTACC	1 cut(s)	721
Kzo9I	GATC	2 cut(s)	161, 290
Lsp1109I	GCAGC	4 cut(s)	245, 407, 435, 526
LweI	GCATC	2 cut(s)	104, 411
MaeII	ACGT	3 cut(s)	339, 475, 504
MaeIII	GTNAC	1 cut(s)	664
MalI	GATC	2 cut(s)	163, 292
MboI	GATC	2 cut(s)	161, 290
MboII	GAAGA	4 cut(s)	267, 397, 716, 735
MflI	RGATCY	1 cut(s)	161
MhlI	GDGCHC	3 cut(s)	175, 605, 735
MluCI	AATT	3 cut(s)	41, 279, 545
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	7 cut(s)	80, 84, 217, 280, 281, 370, 587
MroXI	GAANNNNTTC	1 cut(s)	465
MseI	TTAA	6 cut(s)	39, 377, 518, 740, 746, 757
MslI	CAYNNNNRTG	2 cut(s)	626, 674
MspCI	CTTAAG	1 cut(s)	376
MspI	CCGG	1 cut(s)	511
Mva1269I	GAATGC	1 cut(s)	528
MwoI	GCNNNNNNNGC	1 cut(s)	432
NdeII	GATC	2 cut(s)	161, 290
NlaIII	CATG	5 cut(s)	160, 187, 359, 625, 731
NlaIV	GGNNCC	2 cut(s)	52, 719
NmuCI	GTSAC	1 cut(s)	664
NspV	TTCGAA	1 cut(s)	298
PctI	GAATGC	1 cut(s)	528
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	4 cut(s)	235, 422, 425, 541
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
Psp1406I	AACGTT	1 cut(s)	504
PspN4I	GGNNCC	2 cut(s)	52, 719
PspPI	GGNCC	2 cut(s)	50, 268
PstI	CTGCAG	3 cut(s)	169, 235, 425
PsuI	RGATCY	1 cut(s)	161
RsaI	GTAC	4 cut(s)	192, 413, 478, 719
RsaNI	GTAC	4 cut(s)	191, 412, 477, 718
RseI	CAYNNNNRTG	2 cut(s)	626, 674
SaqAI	TTAA	6 cut(s)	39, 377, 518, 740, 746, 757
SatI	GCNGC	4 cut(s)	234, 421, 424, 540
Sau3AI	GATC	2 cut(s)	161, 290
Sau96I	GGNCC	2 cut(s)	50, 268
ScaI	AGTACT	1 cut(s)	413
SchI	GAGTC	1 cut(s)	221
SduI	GDGCHC	3 cut(s)	175, 605, 735
SetI	ASST	6 cut(s)	342, 422, 478, 507, 719, 746
SfaNI	GCATC	2 cut(s)	104, 411
SfcI	CTRYAG	3 cut(s)	165, 231, 421
SfuI	TTCGAA	1 cut(s)	298
SinI	GGWCC	1 cut(s)	268
SmiMI	CAYNNNNRTG	2 cut(s)	626, 674
SmlI	CTYRAG	2 cut(s)	376, 415
SmoI	CTYRAG	2 cut(s)	376, 415
Sse9I	AATT	3 cut(s)	41, 279, 545
SsiI	CCGC	1 cut(s)	77
SspI	AATATT	1 cut(s)	755
TaiI	ACGT	3 cut(s)	342, 478, 507
TaqI	TCGA	2 cut(s)	298, 459
TaqII	GACCGA	1 cut(s)	256
TasI	AATT	3 cut(s)	41, 279, 545
TatI	WGTACW	2 cut(s)	190, 411
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	6 cut(s)	39, 377, 518, 740, 746, 757
Tru9I	TTAA	6 cut(s)	39, 377, 518, 740, 746, 757
TscAI	CASTG	2 cut(s)	87, 180
TseFI	GTSAC	1 cut(s)	664
TseI	GCWGC	4 cut(s)	233, 420, 423, 539
Tsp45I	GTSAC	1 cut(s)	664
TspDTI	ATGAA	2 cut(s)	347, 629
TspRI	CASTG	2 cut(s)	87, 180
Vha464I	CTTAAG	1 cut(s)	376
VpaK11BI	GGWCC	1 cut(s)	268
XapI	RAATTY	2 cut(s)	41, 545
XmnI	GAANNNNTTC	1 cut(s)	465
ZrmI	AGTACT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.