Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007557

Physical Location & Seq

Genomic Coordinates Reverse (-)

13278806 .. 13286002

Gene Structure 7197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001273

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTCGAAGAGGTTTGGTAATCTGTTGATCGGCAAGCCCTACAGTTTCACTGTCGGCGCCAATGTCATCCGCCGTAGAATTTACCTCTTCCGCGAAGGGGAGAGGAGGTGGTTACCGCTGAAGAGCATGATACTTCCGGTGAGCATCCGCTGCAACACTTGTGCCAATCGCATGCCTCAAGGCACCACTTTGAACAATGTAAGACGACGCCCCCTTTCCAAGATGAAGGAAGACCCAGAGAATTCAGGCCATGTTGTTGAGAATGGTGCTACAGAAATTTTTGAACATGAGAAATCAGAACACCTTGGAAAGATTCATGATGAAGATGGTTTGGATTATGAAACATTTGACTCTAATTTGAAGAAATCAGAATGCCTTGGAAAGAGTCGTGATGAAGATGGTTTGGATCCTGAAACATCTGACTCTAATTTGAAGAAATCTGGGCATCATCGAAAGATTCATGATGAAGCTGGCTTAGATTATGAAACATCTGACTCTGATTTGAAGAGACAAAAGCTTATGACTGGGCTTCCTAGCAACCCAACAGAGTCGTTCACTCTTTCGGATAGCTCAAGCACAGAGCTAGTCTTTCCCCATGTGGGCAATGAGAATTTCAATTGTGAATTGCTCTCGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

24.1

Weight (kDa)

6.26

Isoelectric Point (pI)

56.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007557)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0233381 RchiOBHm_Chr7g0233401
rosa_laevigata	RLG00000001273 RLG00000024849
rosa_multiflora	Rmu_sc0003624.1_g000022 Rmu_sc0006414.1_g000014 Rmu_sc0008806.1_g000008 Rmu_sc0017965.1_g000001 Rmu_sc0024703.1_g000004 Rmu_sc0036637.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417400
rosa_rugosa	Rorug03G0057600
rosa_samantha	Rh3BG119000 Rh3CG122400 Rh3DG121100 Rh4BG223600 Rh4DG220700 Rh7AG436200 Rh7CG455600 Rh7CG455900
rosa_wichuraiana	Rw3G009790 Rw4G019070 Rw7G035940 Rw7G035950 Rw7G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	56, 182
AccII	CGCG	1 cut(s)	93
AciI	CCGC	4 cut(s)	70, 91, 116, 148
AclWI	GGATC	2 cut(s)	401, 414
AcsI	RAATTY	4 cut(s)	78, 241, 276, 610
AcuI	CTGAAG	1 cut(s)	140
AcyI	GRCGYC	2 cut(s)	57, 208
AfiI	CCNNNNNNNGG	2 cut(s)	97, 599
AgsI	TTSAA	6 cut(s)	193, 284, 361, 433, 505, 616
AluBI	AGCT	4 cut(s)	470, 517, 570, 583
AluI	AGCT	4 cut(s)	470, 517, 570, 583
Alw26I	GTCTC	1 cut(s)	502
AlwI	GGATC	2 cut(s)	401, 414
Ama87I	CYCGRG	1 cut(s)	631
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	1 cut(s)	150
ApoI	RAATTY	4 cut(s)	78, 241, 276, 610
AspLEI	GCGC	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	151
AvaI	CYCGRG	1 cut(s)	631
BamHI	GGATCC	1 cut(s)	406
BanI	GGYRCC	2 cut(s)	56, 182
BbsI	GAAGAC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	2 cut(s)	320, 392
BceAI	ACGGC	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	502
BfaI	CTAG	2 cut(s)	534, 584
BfmI	CTRYAG	2 cut(s)	40, 270
BfoI	RGCGCY	1 cut(s)	60
BisI	GCNGC	1 cut(s)	151
BlsI	GCNGC	1 cut(s)	152
BmeT110I	CYCGRG	1 cut(s)	631
BmiI	GGNNCC	3 cut(s)	58, 184, 408
BmrI	ACTGGG	1 cut(s)	534
BmsI	GCATC	2 cut(s)	153, 454
BmuI	ACTGGG	1 cut(s)	534
BpiI	GAAGAC	1 cut(s)	237
BpuEI	CTTGAG	2 cut(s)	162, 556
BsaHI	GRCGYC	2 cut(s)	57, 208
BsaJI	CCNNGG	2 cut(s)	304, 376
BsaWI	WCCGGW	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 599
Bse1I	ACTGG	1 cut(s)	529
Bse3DI	GCAATG	1 cut(s)	610
BseDI	CCNNGG	2 cut(s)	304, 376
BseGI	GGATG	2 cut(s)	66, 144
BseLI	CCNNNNNNNGG	2 cut(s)	97, 599
BseMI	GCAATG	1 cut(s)	610
BseNI	ACTGG	1 cut(s)	529
BseRI	GAGGAG	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	137
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	249
BshNI	GGYRCC	2 cut(s)	56, 182
BsiHKCI	CYCGRG	1 cut(s)	631
BsiSI	CCGG	1 cut(s)	137
BslI	CCNNNNNNNGG	2 cut(s)	97, 599
BsmAI	GTCTC	1 cut(s)	502
BsmI	GAATGC	1 cut(s)	377
BsnI	GGCC	1 cut(s)	249
BsoBI	CYCGRG	1 cut(s)	631
Bsp143I	GATC	2 cut(s)	27, 406
BspACI	CCGC	4 cut(s)	70, 91, 116, 148
BspANI	GGCC	1 cut(s)	249
BspFNI	CGCG	1 cut(s)	93
BspHI	TCATGA	2 cut(s)	316, 460
BspLI	GGNNCC	3 cut(s)	58, 184, 408
BspPI	GGATC	2 cut(s)	401, 414
BspQI	GCTCTTC	1 cut(s)	116
BspT107I	GGYRCC	2 cut(s)	56, 182
BsrDI	GCAATG	1 cut(s)	610
BsrI	ACTGG	1 cut(s)	529
BssECI	CCNNGG	2 cut(s)	304, 376
BssMI	GATC	2 cut(s)	27, 406
BssNI	GRCGYC	2 cut(s)	57, 208
BssT1I	CCWWGG	2 cut(s)	304, 376
Bst4CI	ACNGT	2 cut(s)	44, 52
Bst6I	CTCTTC	4 cut(s)	2, 92, 116, 500
BstACI	GRCGYC	2 cut(s)	57, 208
BstAPI	GCANNNNNTGC	1 cut(s)	150
BstC8I	GCNNGC	3 cut(s)	35, 173, 472
BstDEI	CTNAG	1 cut(s)	475
BstEII	GGTNACC	1 cut(s)	111
BstF5I	GGATG	2 cut(s)	66, 144
BstFNI	CGCG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	2 cut(s)	30, 409
BstMAI	GTCTC	1 cut(s)	502
BstMBI	GATC	2 cut(s)	27, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	175
BstPI	GGTNACC	1 cut(s)	111
BstSFI	CTRYAG	2 cut(s)	40, 270
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	137
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BsuRI	GGCC	1 cut(s)	249
BtsCI	GGATG	2 cut(s)	66, 144
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	3 cut(s)	35, 173, 472
CciI	TCATGA	2 cut(s)	316, 460
CfoI	GCGC	1 cut(s)	59
CseI	GACGC	1 cut(s)	216
CviAII	CATG	7 cut(s)	127, 172, 251, 287, 317, 461, 596
CviJI	RGCY	8 cut(s)	37, 249, 470, 474, 517, 529, 570, 583
CviKI_1	RGCY	8 cut(s)	37, 249, 470, 474, 517, 529, 570, 583
DdeI	CTNAG	1 cut(s)	475
DinI	GGCGCC	1 cut(s)	58
DpnI	GATC	2 cut(s)	29, 408
DpnII	GATC	2 cut(s)	27, 406
Eam1104I	CTCTTC	4 cut(s)	2, 92, 116, 500
EarI	CTCTTC	4 cut(s)	2, 92, 116, 500
EciI	GGCGGA	1 cut(s)	59
Eco130I	CCWWGG	2 cut(s)	304, 376
Eco57I	CTGAAG	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	631
Eco91I	GGTNACC	1 cut(s)	111
EcoO65I	GGTNACC	1 cut(s)	111
EcoRI	GAATTC	1 cut(s)	241
EcoT14I	CCWWGG	2 cut(s)	304, 376
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
ErhI	CCWWGG	2 cut(s)	304, 376
FaeI	CATG	7 cut(s)	130, 175, 254, 290, 320, 464, 599
FatI	CATG	7 cut(s)	126, 171, 250, 286, 316, 460, 595
Fnu4HI	GCNGC	1 cut(s)	151
FokI	GGATG	2 cut(s)	53, 131
Fsp4HI	GCNGC	1 cut(s)	151
FspBI	CTAG	2 cut(s)	534, 584
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	151
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	1 cut(s)	137
HgaI	GACGC	1 cut(s)	216
HhaI	GCGC	1 cut(s)	59
Hin1I	GRCGYC	2 cut(s)	57, 208
Hin1II	CATG	7 cut(s)	130, 175, 254, 290, 320, 464, 599
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	7 cut(s)	313, 350, 385, 422, 457, 494, 548
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	555
Hpy188I	TCNGA	6 cut(s)	298, 370, 421, 493, 499, 565
Hpy188III	TCNNGA	6 cut(s)	317, 389, 410, 461, 631, 633
Hpy8I	GTNNAC	1 cut(s)	555
Hpy99I	CGWCG	1 cut(s)	210
HpyAV	CCTTC	2 cut(s)	89, 220
HpyCH4III	ACNGT	2 cut(s)	44, 52
HpyCH4V	TGCA	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
HpyF3I	CTNAG	1 cut(s)	475
Hsp92I	GRCGYC	2 cut(s)	57, 208
Hsp92II	CATG	7 cut(s)	130, 175, 254, 290, 320, 464, 599
HspAI	GCGC	1 cut(s)	57
KasI	GGCGCC	1 cut(s)	56
Kzo9I	GATC	2 cut(s)	27, 406
LguI	GCTCTTC	1 cut(s)	116
LpnPI	CCDG	7 cut(s)	150, 231, 249, 423, 426, 456, 510
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	2 cut(s)	153, 454
MaeI	CTAG	2 cut(s)	534, 584
MaeIII	GTNAC	1 cut(s)	111
MalI	GATC	2 cut(s)	29, 408
MboI	GATC	2 cut(s)	27, 406
MboII	GAAGA	9 cut(s)	19, 79, 133, 242, 335, 373, 407, 445, 517
MfeI	CAATTG	1 cut(s)	616
MflI	RGATCY	1 cut(s)	406
MluCI	AATT	8 cut(s)	78, 241, 276, 355, 427, 610, 616, 623
Mly113I	GGCGCC	1 cut(s)	57
MlyI	GAGTC	5 cut(s)	344, 394, 416, 488, 557
MnlI	CCTC	5 cut(s)	3, 95, 96, 99, 186
MspA1I	CMGCKG	2 cut(s)	118, 150
MspI	CCGG	1 cut(s)	137
MunI	CAATTG	1 cut(s)	616
Mva1269I	GAATGC	1 cut(s)	377
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	150
NarI	GGCGCC	1 cut(s)	57
NdeII	GATC	2 cut(s)	27, 406
NlaIII	CATG	7 cut(s)	130, 175, 254, 290, 320, 464, 599
NlaIV	GGNNCC	3 cut(s)	58, 184, 408
NspI	RCATGY	1 cut(s)	175
PaeI	GCATGC	1 cut(s)	175
PaeR7I	CTCGAG	1 cut(s)	631
PagI	TCATGA	2 cut(s)	316, 460
PciSI	GCTCTTC	1 cut(s)	116
PctI	GAATGC	1 cut(s)	377
PfeI	GAWTC	2 cut(s)	313, 457
PkrI	GCNGC	1 cut(s)	152
PleI	GAGTC	5 cut(s)	344, 393, 416, 488, 556
PluTI	GGCGCC	1 cut(s)	60
PpsI	GAGTC	5 cut(s)	344, 393, 416, 488, 556
PspEI	GGTNACC	1 cut(s)	111
PspN4I	GGNNCC	3 cut(s)	58, 184, 408
PsuI	RGATCY	1 cut(s)	406
SapI	GCTCTTC	1 cut(s)	116
SatI	GCNGC	1 cut(s)	151
Sau3AI	GATC	2 cut(s)	27, 406
SchI	GAGTC	5 cut(s)	344, 394, 416, 488, 557
SetI	ASST	8 cut(s)	14, 87, 110, 306, 472, 519, 572, 585
SfaNI	GCATC	2 cut(s)	153, 454
SfcI	CTRYAG	2 cut(s)	40, 270
SfoI	GGCGCC	1 cut(s)	58
Sfr274I	CTCGAG	1 cut(s)	631
SlaI	CTCGAG	1 cut(s)	631
SmlI	CTYRAG	3 cut(s)	177, 571, 631
SmoI	CTYRAG	3 cut(s)	177, 571, 631
SphI	GCATGC	1 cut(s)	175
Sse9I	AATT	8 cut(s)	78, 241, 276, 355, 427, 610, 616, 623
SsiI	CCGC	4 cut(s)	70, 91, 116, 148
SspDI	GGCGCC	1 cut(s)	56
SspMI	CTAG	2 cut(s)	534, 584
StyI	CCWWGG	2 cut(s)	304, 376
TaaI	ACNGT	2 cut(s)	44, 52
TaqI	TCGA	3 cut(s)	5, 451, 632
TasI	AATT	8 cut(s)	78, 241, 276, 355, 427, 610, 616, 623
TfiI	GAWTC	2 cut(s)	313, 457
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	1 cut(s)	150
TspDTI	ATGAA	8 cut(s)	239, 305, 336, 354, 408, 449, 480, 498
TspRI	CASTG	1 cut(s)	55
XapI	RAATTY	4 cut(s)	78, 241, 276, 610
XceI	RCATGY	1 cut(s)	175
XhoI	CTCGAG	1 cut(s)	631
XspI	CTAG	2 cut(s)	534, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.