Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0007557

Physical Location & Seq

Genomic Coordinates Reverse (-)

39735254 .. 39735805

Gene Structure 552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024849

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAGGTTTGGGCATATGTTGATTGACAAGCCCTACGGTCTCACTACCGGAGTCAACGTAATCCGCCATAGAATTTATCGGTTCCGGGAAGGAGAGAAGAGGTGGTTACCGCTGAAGGGCATGATACTTCCGATGAAGGAAGACCCAGAGAATTCAGGCCATGTTGTTGAGGATGGTGCTATAGAAATTTTTGAACACGAGAAATCAGAACACCTTGGAAAGATTGGTGATGAAGATGGTTTGGATCATGAAACATCTGACTCTAATTTGAAGAAATCCGAGCATCGTCGAAAGATTCGTGATGAAGGTGGTTTAGATTATGAAACGTATGACCCTGATTTAAAGAGACAAAAGCTTACGATTGGGCTTCCTAGCAACCCAACTGACGTGTTCACTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

15.38

Weight (kDa)

5.79

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007557)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0233381 RchiOBHm_Chr7g0233401
rosa_laevigata	RLG00000001273 RLG00000024849
rosa_multiflora	Rmu_sc0003624.1_g000022 Rmu_sc0006414.1_g000014 Rmu_sc0008806.1_g000008 Rmu_sc0017965.1_g000001 Rmu_sc0024703.1_g000004 Rmu_sc0036637.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417400
rosa_rugosa	Rorug03G0057600
rosa_samantha	Rh3BG119000 Rh3CG122400 Rh3DG121100 Rh4BG223600 Rh4DG220700 Rh7AG436200 Rh7CG455600 Rh7CG455900
rosa_wichuraiana	Rw3G009790 Rw4G019070 Rw7G035940 Rw7G035950 Rw7G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	64, 110
AclWI	GGATC	1 cut(s)	252
AcsI	RAATTY	3 cut(s)	72, 151, 186
AcuI	CTGAAG	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	2 cut(s)	194, 271
AjiI	CACGTC	1 cut(s)	388
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
Alw26I	GTCTC	2 cut(s)	44, 340
AlwI	GGATC	1 cut(s)	252
AoxI	GGCC	1 cut(s)	157
ApoI	RAATTY	3 cut(s)	72, 151, 186
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	239
BauI	CACGAG	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	147
BccI	CCATC	2 cut(s)	167, 230
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	2 cut(s)	44, 340
BfaI	CTAG	1 cut(s)	372
BfmI	CTRYAG	1 cut(s)	180
Bme1390I	CCNGG	1 cut(s)	86
BmgBI	CACGTC	1 cut(s)	388
BmiI	GGNNCC	1 cut(s)	83
BmrFI	CCNGG	1 cut(s)	86
BmsI	GCATC	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	214
BsaWI	WCCGGW	1 cut(s)	47
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	214
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	116
BshFI	GGCC	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	48, 85
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	2 cut(s)	44, 340
BsnI	GGCC	1 cut(s)	159
Bso31I	GGTCTC	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	244
BspACI	CCGC	2 cut(s)	64, 110
BspANI	GGCC	1 cut(s)	159
BspHI	TCATGA	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	83
BspPI	GGATC	1 cut(s)	252
BspTNI	GGTCTC	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	1 cut(s)	244
BssSI	CACGAG	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	214
Bst2BI	CACGAG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	38
Bst6I	CTCTTC	1 cut(s)	92
BstEII	GGTNACC	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	1 cut(s)	247
BstMAI	GTCTC	2 cut(s)	44, 340
BstMBI	GATC	1 cut(s)	244
BstPI	GGTNACC	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	84
BstSFI	CTRYAG	1 cut(s)	180
BstV2I	GAAGAC	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	159
BtrI	CACGTC	1 cut(s)	388
BtsCI	GGATG	1 cut(s)	178
CciI	TCATGA	1 cut(s)	247
CviAII	CATG	3 cut(s)	121, 161, 248
CviJI	RGCY	4 cut(s)	31, 159, 355, 367
CviKI_1	RGCY	4 cut(s)	31, 159, 355, 367
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
DraI	TTTAAA	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
EciI	GGCGGA	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	214
Eco31I	GGTCTC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	134
Eco91I	GGTNACC	1 cut(s)	105
EcoO65I	GGTNACC	1 cut(s)	105
EcoRI	GAATTC	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	214
FaeI	CATG	3 cut(s)	124, 164, 251
FaiI	YATR	9 cut(s)	15, 17, 69, 122, 162, 182, 249, 321, 330
FatI	CATG	3 cut(s)	120, 160, 247
FauNDI	CATATG	1 cut(s)	15
FokI	GGATG	1 cut(s)	185
FspBI	CTAG	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	2 cut(s)	48, 85
Hin1II	CATG	3 cut(s)	124, 164, 251
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	3 cut(s)	51, 260, 295
HpaII	CCGG	2 cut(s)	48, 85
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	2 cut(s)	55, 393
Hpy188I	TCNGA	4 cut(s)	132, 208, 259, 280
Hpy188III	TCNNGA	2 cut(s)	248, 299
Hpy8I	GTNNAC	2 cut(s)	55, 393
Hpy99I	CGWCG	1 cut(s)	291
HpyAV	CCTTC	4 cut(s)	83, 109, 130, 299
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4IV	ACGT	3 cut(s)	57, 326, 387
HpySE526I	ACGT	3 cut(s)	57, 326, 387
Hsp92II	CATG	3 cut(s)	124, 164, 251
Kzo9I	GATC	1 cut(s)	244
LpnPI	CCDG	5 cut(s)	61, 98, 141, 159, 348
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	1 cut(s)	372
MaeII	ACGT	3 cut(s)	57, 326, 387
MaeIII	GTNAC	1 cut(s)	105
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	4 cut(s)	109, 152, 245, 283
MluCI	AATT	4 cut(s)	72, 151, 186, 265
MlyI	GAGTC	2 cut(s)	60, 254
MnlI	CCTC	2 cut(s)	93, 163
MseI	TTAA	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	112
MspI	CCGG	2 cut(s)	48, 85
MspR9I	CCNGG	1 cut(s)	86
NciI	CCSGG	1 cut(s)	86
NdeI	CATATG	1 cut(s)	15
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	3 cut(s)	124, 164, 251
NlaIV	GGNNCC	1 cut(s)	83
PagI	TCATGA	1 cut(s)	247
PcsI	WCGNNNNNNNCGW	1 cut(s)	295
PfeI	GAWTC	1 cut(s)	295
PfoI	TCCNGGA	1 cut(s)	84
PleI	GAGTC	2 cut(s)	59, 254
PpsI	GAGTC	2 cut(s)	59, 254
PspEI	GGTNACC	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	341
Sau3AI	GATC	1 cut(s)	244
SchI	GAGTC	2 cut(s)	60, 254
ScrFI	CCNGG	1 cut(s)	86
SetI	ASST	8 cut(s)	8, 60, 104, 216, 310, 329, 357, 390
SfaNI	GCATC	1 cut(s)	292
SfcI	CTRYAG	1 cut(s)	180
Sse9I	AATT	4 cut(s)	72, 151, 186, 265
SsiI	CCGC	2 cut(s)	64, 110
SspMI	CTAG	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	84
StyI	CCWWGG	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	38
TaiI	ACGT	3 cut(s)	60, 329, 390
TaqI	TCGA	1 cut(s)	289
TasI	AATT	4 cut(s)	72, 151, 186, 265
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TspDTI	ATGAA	5 cut(s)	149, 246, 264, 318, 336
XapI	RAATTY	3 cut(s)	72, 151, 186
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.