Rh3BG119000

Coiled-coil domain-containing protein 94 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0007557
Physical Location & Seq
Forward (+)
9854831 .. 9855256
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG119000.1

Sequence Viewer

Length: 426 bp
ATGAGGTTTGGGCATATGTTGGTCGACAAGCCCTACGGTCTCACTACCGGCGTCAACGTAATCCGCCATAAAATTTACCGGTTCCGGGAAGGAGAGAAGAGGTGGTTACCGCTGAAGAGCATGATACTTCCGGTGAGCATCCGGTGCACCACTTGTACCAATCACATGCCCCAAGGCACCACTTTGACCTATGTAAGACGACGCACCCTCTCCAAGACTTCTTTGGGAGCTCCAATAGTTATATTTTTCTTCAATTGTACCAAATGTCGGGCAAATATCCAGATGAAGGAAGACCCAGAGAATTCAGGCCATGTTGTTGAGGATGGTACTACAGAAATTTTTGAACATGAGAAATCAGAACACCTTGGAAAGATTGGTGATGAAGATGGTTTAATTTGGATCATGAAACATCTGACTCTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF572

Protein Analysis

141

Amino Acids

16.26

Weight (kDa)

9.16

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Saf4_Yju2 PF04502 41 - 120 3.5e-16 Saf4/Yju2 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AccI GTMKAC 1 cut(s) 24
AciI CCGC 2 cut(s) 64, 110
AclWI GGATC 1 cut(s) 407
AcsI RAATTY 3 cut(s) 72, 301, 336
AcuI CTGAAG 1 cut(s) 134
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 3 cut(s) 157, 259, 328
AfiI CCNNNNNNNGG 3 cut(s) 85, 267, 286
AgeI ACCGGT 1 cut(s) 78
AgsI TTSAA 2 cut(s) 253, 344
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
Alw21I GWGCWC 2 cut(s) 149, 232
Alw26I GTCTC 1 cut(s) 44
Alw44I GTGCAC 1 cut(s) 145
AlwI GGATC 1 cut(s) 407
AoxI GGCC 1 cut(s) 307
ApaLI GTGCAC 1 cut(s) 145
ApoI RAATTY 3 cut(s) 72, 301, 336
AsiGI ACCGGT 1 cut(s) 78
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 145, 389
BaeGI GKGCMC 1 cut(s) 149
BanI GGYRCC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 232
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 2 cut(s) 149, 232
BccI CCATC 2 cut(s) 317, 380
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 330
Bme1390I CCNGG 1 cut(s) 86
BmiI GGNNCC 2 cut(s) 83, 178
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 1 cut(s) 147
BpiI GAAGAC 1 cut(s) 297
BpuMI CCSGG 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 172, 364
BsaWI WCCGGW 3 cut(s) 78, 130, 141
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 267, 286
Bse118I RCCGGY 2 cut(s) 47, 78
BseDI CCNNGG 2 cut(s) 172, 364
BseGI GGATG 2 cut(s) 138, 328
BseLI CCNNNNNNNGG 3 cut(s) 85, 267, 286
BseSI GKGCMC 1 cut(s) 149
BshFI GGCC 1 cut(s) 309
BshNI GGYRCC 1 cut(s) 176
BshTI ACCGGT 1 cut(s) 78
BsiHKAI GWGCWC 2 cut(s) 149, 232
BsiSI CCGG 5 cut(s) 48, 79, 85, 131, 142
BslI CCNNNNNNNGG 3 cut(s) 85, 267, 286
BsmAI GTCTC 1 cut(s) 44
BsnI GGCC 1 cut(s) 309
Bso31I GGTCTC 1 cut(s) 44
Bsp1286I GDGCHC 2 cut(s) 149, 232
Bsp143I GATC 1 cut(s) 399
BspACI CCGC 2 cut(s) 64, 110
BspANI GGCC 1 cut(s) 309
BspHI TCATGA 1 cut(s) 402
BspLI GGNNCC 2 cut(s) 83, 178
BspPI GGATC 1 cut(s) 407
BspQI GCTCTTC 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 176
BspTNI GGTCTC 1 cut(s) 44
BsrFI RCCGGY 2 cut(s) 47, 78
BssAI RCCGGY 2 cut(s) 47, 78
BssECI CCNNGG 2 cut(s) 172, 364
BssMI GATC 1 cut(s) 399
BssNI GRCGYC 1 cut(s) 51
BssT1I CCWWGG 2 cut(s) 172, 364
Bst4CI ACNGT 1 cut(s) 38
Bst6I CTCTTC 2 cut(s) 92, 110
BstACI GRCGYC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 144
BstEII GGTNACC 1 cut(s) 105
BstF5I GGATG 2 cut(s) 138, 328
BstKTI GATC 1 cut(s) 402
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 1 cut(s) 399
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstNSI RCATGY 1 cut(s) 169
BstPI GGTNACC 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 84
BstSFI CTRYAG 1 cut(s) 330
BstSLI GKGCMC 1 cut(s) 149
BstV2I GAAGAC 1 cut(s) 297
BsuRI GGCC 1 cut(s) 309
BtsCI GGATG 2 cut(s) 138, 328
CciI TCATGA 1 cut(s) 402
Cfr10I RCCGGY 2 cut(s) 47, 78
CseI GACGC 2 cut(s) 40, 210
Csp6I GTAC 3 cut(s) 156, 258, 327
CspAI ACCGGT 1 cut(s) 78
CviAII CATG 5 cut(s) 121, 166, 311, 347, 403
CviJI RGCY 3 cut(s) 31, 230, 309
CviKI_1 RGCY 3 cut(s) 31, 230, 309
CviQI GTAC 3 cut(s) 156, 258, 327
DpnI GATC 1 cut(s) 401
DpnII GATC 1 cut(s) 399
Eam1104I CTCTTC 2 cut(s) 92, 110
EarI CTCTTC 2 cut(s) 92, 110
EciI GGCGGA 1 cut(s) 53
Ecl136II GAGCTC 1 cut(s) 230
Eco130I CCWWGG 2 cut(s) 172, 364
Eco24I GRGCYC 1 cut(s) 232
Eco31I GGTCTC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 134
Eco91I GGTNACC 1 cut(s) 105
EcoICRI GAGCTC 1 cut(s) 230
EcoO65I GGTNACC 1 cut(s) 105
EcoRI GAATTC 1 cut(s) 301
EcoT14I CCWWGG 2 cut(s) 172, 364
EcoT38I GRGCYC 1 cut(s) 232
ErhI CCWWGG 2 cut(s) 172, 364
FaeI CATG 5 cut(s) 124, 169, 314, 350, 406
FatI CATG 5 cut(s) 120, 165, 310, 346, 402
FauNDI CATATG 1 cut(s) 15
FblI GTMKAC 1 cut(s) 24
FokI GGATG 2 cut(s) 125, 335
FriOI GRGCYC 1 cut(s) 232
HaeIII GGCC 1 cut(s) 309
HapII CCGG 5 cut(s) 48, 79, 85, 131, 142
HgaI GACGC 2 cut(s) 40, 210
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 5 cut(s) 124, 169, 314, 350, 406
HincII GTYRAC 2 cut(s) 25, 55
HindII GTYRAC 2 cut(s) 25, 55
HinfI GANTC 1 cut(s) 415
HpaII CCGG 5 cut(s) 48, 79, 85, 131, 142
HphI GGTGA 2 cut(s) 145, 389
Hpy166II GTNNAC 3 cut(s) 25, 55, 147
Hpy188I TCNGA 2 cut(s) 358, 414
Hpy188III TCNNGA 2 cut(s) 280, 403
Hpy8I GTNNAC 3 cut(s) 25, 55, 147
Hpy99I CGWCG 1 cut(s) 204
HpyAV CCTTC 2 cut(s) 83, 280
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 5 cut(s) 124, 169, 314, 350, 406
Kzo9I GATC 1 cut(s) 399
LguI GCTCTTC 1 cut(s) 110
LmnI GCTCC 2 cut(s) 227, 235
LpnPI CCDG 8 cut(s) 61, 92, 98, 144, 155, 291, 293, 309
LweI GCATC 1 cut(s) 147
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 105
MalI GATC 1 cut(s) 401
MboI GATC 1 cut(s) 399
MboII GAAGA 5 cut(s) 109, 127, 241, 302, 395
MfeI CAATTG 1 cut(s) 253
MhlI GDGCHC 2 cut(s) 149, 232
MluCI AATT 6 cut(s) 72, 253, 301, 336, 393, 420
MlyI GAGTC 1 cut(s) 409
MnlI CCTC 3 cut(s) 93, 218, 313
MseI TTAA 1 cut(s) 392
MspA1I CMGCKG 1 cut(s) 112
MspI CCGG 5 cut(s) 48, 79, 85, 131, 142
MspR9I CCNGG 1 cut(s) 86
MunI CAATTG 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 144
NciI CCSGG 1 cut(s) 86
NdeI CATATG 1 cut(s) 15
NdeII GATC 1 cut(s) 399
NlaIII CATG 5 cut(s) 124, 169, 314, 350, 406
NlaIV GGNNCC 2 cut(s) 83, 178
NspI RCATGY 1 cut(s) 169
PagI TCATGA 1 cut(s) 402
PciSI GCTCTTC 1 cut(s) 110
PfoI TCCNGGA 1 cut(s) 84
PinAI ACCGGT 1 cut(s) 78
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
Psp124BI GAGCTC 1 cut(s) 232
PspEI GGTNACC 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 83, 178
RsaI GTAC 3 cut(s) 157, 259, 328
RsaNI GTAC 3 cut(s) 156, 258, 327
SacI GAGCTC 1 cut(s) 232
SalI GTCGAC 1 cut(s) 23
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 392
Sau3AI GATC 1 cut(s) 399
SchI GAGTC 1 cut(s) 409
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 2 cut(s) 149, 232
SetI ASST 6 cut(s) 8, 60, 104, 191, 232, 366
SfaNI GCATC 1 cut(s) 147
SfcI CTRYAG 1 cut(s) 330
Sse9I AATT 6 cut(s) 72, 253, 301, 336, 393, 420
SsiI CCGC 2 cut(s) 64, 110
SstI GAGCTC 1 cut(s) 232
StyD4I CCNGG 1 cut(s) 84
StyI CCWWGG 2 cut(s) 172, 364
TaaI ACNGT 1 cut(s) 38
TaiI ACGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 24
TasI AATT 6 cut(s) 72, 253, 301, 336, 393, 420
Tru1I TTAA 1 cut(s) 392
Tru9I TTAA 1 cut(s) 392
TspDTI ATGAA 3 cut(s) 299, 396, 419
VneI GTGCAC 1 cut(s) 145
XapI RAATTY 3 cut(s) 72, 301, 336
XceI RCATGY 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XmiI GTMKAC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.