Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036637.1

Orthogroup ID

OG0007557

Physical Location & Seq

Genomic Coordinates Forward (+)

4 .. 536

Gene Structure 533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036637.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atgatacttccggtgagcatccgctgcaacacttgtgccaatcgcatgccccaaggcaccactttgaactatgtaagacgacgccccctctccaagacttctttgggagctccaatagttacatttttcttcaattgtaccaagtgccgggcactcatccggatgaaggaagacccggagaattcaggatatgttgttgaggatggtgctacagaagttcttgaacatgagaaatcagaacaccttggaaagattcatgatgaagatggtttggatcatgaaacatctgactctaatttgaaggtaataatgactttcactttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF572

Protein Analysis

108

Amino Acids

12.18

Weight (kDa)

6.06

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007557)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0233381 RchiOBHm_Chr7g0233401
rosa_laevigata	RLG00000001273 RLG00000024849
rosa_multiflora	Rmu_sc0003624.1_g000022 Rmu_sc0006414.1_g000014 Rmu_sc0008806.1_g000008 Rmu_sc0017965.1_g000001 Rmu_sc0024703.1_g000004 Rmu_sc0036637.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417400
rosa_rugosa	Rorug03G0057600
rosa_samantha	Rh3BG119000 Rh3CG122400 Rh3DG121100 Rh4BG223600 Rh4DG220700 Rh7AG436200 Rh7CG455600 Rh7CG455900
rosa_wichuraiana	Rw3G009790 Rw4G019070 Rw7G035940 Rw7G035950 Rw7G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	56
AccIII	TCCGGA	1 cut(s)	159
AciI	CCGC	1 cut(s)	22
AclWI	GGATC	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	181
AcyI	GRCGYC	1 cut(s)	82
AdeI	CACNNNGTG	1 cut(s)	324
AfaI	GTAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	2 cut(s)	147, 166
AgsI	TTSAA	4 cut(s)	67, 133, 224, 301
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
Alw21I	GWGCWC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	282
Aor13HI	TCCGGA	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	1 cut(s)	181
ArsI	GACNNNNNNTTYG	1 cut(s)	304
AsuC2I	CCSGG	2 cut(s)	149, 176
AsuHPI	GGTGA	1 cut(s)	25
BaeGI	GKGCMC	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	11
BccI	CCATC	2 cut(s)	197, 260
BcnI	CCSGG	2 cut(s)	149, 176
BfmI	CTRYAG	1 cut(s)	210
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
Bme1390I	CCNGG	2 cut(s)	149, 176
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	2 cut(s)	149, 176
BmsI	GCATC	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	177
BpuMI	CCSGG	2 cut(s)	149, 176
BsaHI	GRCGYC	1 cut(s)	82
BsaJI	CCNNGG	2 cut(s)	52, 244
BsaWI	WCCGGW	2 cut(s)	10, 159
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 166
BseAI	TCCGGA	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	52, 244
BseGI	GGATG	4 cut(s)	18, 156, 168, 208
BseLI	CCNNNNNNNGG	2 cut(s)	147, 166
BseSI	GKGCMC	1 cut(s)	154
BseXI	GCAGC	1 cut(s)	11
BshNI	GGYRCC	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	112
BsiSI	CCGG	4 cut(s)	11, 148, 160, 176
BslI	CCNNNNNNNGG	2 cut(s)	147, 166
Bsp1286I	GDGCHC	2 cut(s)	112, 154
Bsp13I	TCCGGA	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	274
BspACI	CCGC	1 cut(s)	22
BspEI	TCCGGA	1 cut(s)	159
BspHI	TCATGA	2 cut(s)	256, 277
BspLI	GGNNCC	1 cut(s)	58
BspPI	GGATC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	52, 244
BssMI	GATC	1 cut(s)	274
BssNI	GRCGYC	1 cut(s)	82
BssT1I	CCWWGG	2 cut(s)	52, 244
BstACI	GRCGYC	1 cut(s)	82
BstAPI	GCANNNNNTGC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	47
BstF5I	GGATG	4 cut(s)	18, 156, 168, 208
BstKTI	GATC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	274
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	2 cut(s)	147, 174
BstSFI	CTRYAG	1 cut(s)	210
BstSLI	GKGCMC	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	11
BstV2I	GAAGAC	1 cut(s)	177
BtsCI	GGATG	4 cut(s)	18, 156, 168, 208
Cac8I	GCNNGC	1 cut(s)	47
CciI	TCATGA	2 cut(s)	256, 277
CseI	GACGC	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	4 cut(s)	46, 227, 257, 278
CviJI	RGCY	1 cut(s)	110
CviKI_1	RGCY	1 cut(s)	110
CviQI	GTAC	1 cut(s)	138
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
DraIII	CACNNNGTG	1 cut(s)	324
Ecl136II	GAGCTC	1 cut(s)	110
Eco130I	CCWWGG	2 cut(s)	52, 244
Eco24I	GRGCYC	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	110
EcoRI	GAATTC	1 cut(s)	181
EcoT14I	CCWWGG	2 cut(s)	52, 244
EcoT38I	GRGCYC	1 cut(s)	112
ErhI	CCWWGG	2 cut(s)	52, 244
FaeI	CATG	4 cut(s)	49, 230, 260, 281
FaiI	YATR	6 cut(s)	47, 72, 192, 228, 258, 279
FatI	CATG	4 cut(s)	45, 226, 256, 277
Fnu4HI	GCNGC	1 cut(s)	25
FokI	GGATG	4 cut(s)	5, 143, 175, 215
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	25
GluI	GCNGC	1 cut(s)	25
HapII	CCGG	4 cut(s)	11, 148, 160, 176
HgaI	GACGC	1 cut(s)	90
Hin1I	GRCGYC	1 cut(s)	82
Hin1II	CATG	4 cut(s)	49, 230, 260, 281
HinfI	GANTC	2 cut(s)	253, 290
HpaII	CCGG	4 cut(s)	11, 148, 160, 176
HphI	GGTGA	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	238, 289
Hpy188III	TCNNGA	5 cut(s)	160, 186, 221, 257, 278
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	2 cut(s)	160, 295
HpyCH4V	TGCA	1 cut(s)	27
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
Hsp92I	GRCGYC	1 cut(s)	82
Hsp92II	CATG	4 cut(s)	49, 230, 260, 281
Kpn2I	TCCGGA	1 cut(s)	159
Kzo9I	GATC	1 cut(s)	274
LmnI	GCTCC	2 cut(s)	107, 115
LpnPI	CCDG	5 cut(s)	24, 161, 171, 173, 189
Lsp1109I	GCAGC	1 cut(s)	11
LweI	GCATC	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	3 cut(s)	121, 182, 275
MfeI	CAATTG	1 cut(s)	133
MhlI	GDGCHC	2 cut(s)	112, 154
MluCI	AATT	3 cut(s)	133, 181, 295
MlyI	GAGTC	1 cut(s)	284
MnlI	CCTC	2 cut(s)	98, 193
MroI	TCCGGA	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	24
MspI	CCGG	4 cut(s)	11, 148, 160, 176
MspR9I	CCNGG	2 cut(s)	149, 176
MunI	CAATTG	1 cut(s)	133
MwoI	GCNNNNNNNGC	1 cut(s)	24
NciI	CCSGG	2 cut(s)	149, 176
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	4 cut(s)	49, 230, 260, 281
NlaIV	GGNNCC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	49
PaeI	GCATGC	1 cut(s)	49
PagI	TCATGA	2 cut(s)	256, 277
PfeI	GAWTC	1 cut(s)	253
PkrI	GCNGC	1 cut(s)	26
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
Psp124BI	GAGCTC	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	58
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
RseI	CAYNNNNRTG	1 cut(s)	161
SacI	GAGCTC	1 cut(s)	112
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	1 cut(s)	274
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	2 cut(s)	149, 176
SduI	GDGCHC	2 cut(s)	112, 154
SetI	ASST	3 cut(s)	112, 246, 306
SfaNI	GCATC	1 cut(s)	27
SfcI	CTRYAG	1 cut(s)	210
SmiMI	CAYNNNNRTG	1 cut(s)	161
SphI	GCATGC	1 cut(s)	49
Sse9I	AATT	3 cut(s)	133, 181, 295
SsiI	CCGC	1 cut(s)	22
SstI	GAGCTC	1 cut(s)	112
StyD4I	CCNGG	2 cut(s)	147, 174
StyI	CCWWGG	2 cut(s)	52, 244
TasI	AATT	3 cut(s)	133, 181, 295
TfiI	GAWTC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	24
TspDTI	ATGAA	4 cut(s)	179, 245, 276, 294
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	1 cut(s)	49
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.