Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017965.1

Orthogroup ID

OG0007557

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2152

Gene Structure 2151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017965.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 571 bp

atgaagttctgcaatatattgatcggcaagccctacagtcccgctcccggtttccacgtactccgccatagaatttaccggttcggcgaaggagagacgaggatgttacctctgaagagcatgatacttccggtgagcatccgctgcagcacttgtgccaatcacattgcccagggcaccactttgacctatgtaagacggcacgccttctccgagacttctttgggagctccaatagtaacatttgtcttcaattgtaccaagtgccgggcactcatccagatgaaggaagacccagagaactcaggctatgttgttgaggatggtgctacaaaaatttttgatgaacatgagaaatcagaacaccgtggcaagattagtgatgaagatggtttggatcatgaaacatctgactctaatttgaagaaatctggacattgtcgaaagattcgtgatgaagatggtttggatcatgaaacatcctactctaatttgaagagacaaaagcttatgattgggcttcctagcaacccaacagagtcgttcactctttcggatagctcaagcacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF572

Protein Analysis

190

Amino Acids

21.34

Weight (kDa)

7.11

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007557)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0233381 RchiOBHm_Chr7g0233401
rosa_laevigata	RLG00000001273 RLG00000024849
rosa_multiflora	Rmu_sc0003624.1_g000022 Rmu_sc0006414.1_g000014 Rmu_sc0008806.1_g000008 Rmu_sc0017965.1_g000001 Rmu_sc0024703.1_g000004 Rmu_sc0036637.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417400
rosa_rugosa	Rorug03G0057600
rosa_samantha	Rh3BG119000 Rh3CG122400 Rh3DG121100 Rh4BG223600 Rh4DG220700 Rh7AG436200 Rh7CG455600 Rh7CG455900
rosa_wichuraiana	Rw3G009790 Rw4G019070 Rw7G035940 Rw7G035950 Rw7G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AccBSI	CCGCTC	1 cut(s)	44
AciI	CCGC	3 cut(s)	42, 64, 142
AclWI	GGATC	2 cut(s)	405, 477
AcsI	RAATTY	2 cut(s)	72, 336
AcuI	CTGAAG	1 cut(s)	134
AfaI	GTAC	2 cut(s)	60, 259
AfiI	CCNNNNNNNGG	3 cut(s)	47, 267, 286
AgeI	ACCGGT	1 cut(s)	78
AgsI	TTSAA	3 cut(s)	253, 424, 496
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	3 cut(s)	230, 508, 561
AluI	AGCT	3 cut(s)	230, 508, 561
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	3 cut(s)	89, 209, 493
AlwI	GGATC	2 cut(s)	405, 477
ApeKI	GCWGC	2 cut(s)	144, 147
ApoI	RAATTY	2 cut(s)	72, 336
AsiGI	ACCGGT	1 cut(s)	78
AsuC2I	CCSGG	2 cut(s)	48, 269
AsuHPI	GGTGA	1 cut(s)	145
BaeGI	GKGCMC	2 cut(s)	179, 274
BanI	GGYRCC	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	232
BbsI	GAAGAC	2 cut(s)	241, 297
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	2 cut(s)	131, 159
BccI	CCATC	3 cut(s)	317, 383, 455
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	173
BcnI	CCSGG	2 cut(s)	48, 269
BcoDI	GTCTC	3 cut(s)	89, 209, 493
BfaI	CTAG	1 cut(s)	525
BfmI	CTRYAG	2 cut(s)	34, 145
BisI	GCNGC	2 cut(s)	145, 148
BlsI	GCNGC	2 cut(s)	146, 149
Bme1390I	CCNGG	3 cut(s)	48, 173, 269
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	3 cut(s)	48, 173, 269
BmsI	GCATC	1 cut(s)	147
BpiI	GAAGAC	2 cut(s)	241, 297
BpuEI	CTTGAG	1 cut(s)	547
BpuMI	CCSGG	2 cut(s)	48, 269
BsaAI	YACGTR	1 cut(s)	58
BsaJI	CCNNGG	3 cut(s)	171, 172, 367
BsaWI	WCCGGW	2 cut(s)	78, 130
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 267, 286
Bse118I	RCCGGY	1 cut(s)	78
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	3 cut(s)	171, 172, 367
BseGI	GGATG	5 cut(s)	108, 138, 276, 328, 479
BseLI	CCNNNNNNNGG	3 cut(s)	47, 267, 286
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	318
BseSI	GKGCMC	2 cut(s)	179, 274
BseXI	GCAGC	2 cut(s)	131, 159
BshNI	GGYRCC	1 cut(s)	176
BshTI	ACCGGT	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	232
BsiSI	CCGG	4 cut(s)	48, 79, 131, 268
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	3 cut(s)	47, 267, 286
BsmAI	GTCTC	3 cut(s)	89, 209, 493
BsmBI	CGTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	24
Bsp1286I	GDGCHC	3 cut(s)	179, 232, 274
Bsp143I	GATC	3 cut(s)	21, 397, 469
BspACI	CCGC	3 cut(s)	42, 64, 142
BspCNI	CTCAG	1 cut(s)	317
BspHI	TCATGA	2 cut(s)	400, 472
BspLI	GGNNCC	1 cut(s)	178
BspMAI	CTGCAG	1 cut(s)	149
BspPI	GGATC	2 cut(s)	405, 477
BspQI	GCTCTTC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	176
BsrBI	CCGCTC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	165
BsrFI	RCCGGY	1 cut(s)	78
BssAI	RCCGGY	1 cut(s)	78
BssECI	CCNNGG	3 cut(s)	171, 172, 367
BssMI	GATC	3 cut(s)	21, 397, 469
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	2 cut(s)	38, 368
Bst6I	CTCTTC	2 cut(s)	110, 491
BstAPI	GCANNNNNTGC	1 cut(s)	144
BstBAI	YACGTR	1 cut(s)	58
BstC8I	GCNNGC	2 cut(s)	29, 204
BstDEI	CTNAG	1 cut(s)	304
BstDSI	CCRYGG	1 cut(s)	367
BstF5I	GGATG	5 cut(s)	108, 138, 276, 328, 479
BstKTI	GATC	3 cut(s)	24, 400, 472
BstMAI	GTCTC	3 cut(s)	89, 209, 493
BstMBI	GATC	3 cut(s)	21, 397, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	3 cut(s)	46, 171, 267
BstSFI	CTRYAG	2 cut(s)	34, 145
BstSLI	GKGCMC	2 cut(s)	179, 274
BstV1I	GCAGC	2 cut(s)	131, 159
BstV2I	GAAGAC	2 cut(s)	241, 297
BtgI	CCRYGG	1 cut(s)	367
BtsCI	GGATG	5 cut(s)	108, 138, 276, 328, 479
Cac8I	GCNNGC	2 cut(s)	29, 204
CciI	TCATGA	2 cut(s)	400, 472
Cfr10I	RCCGGY	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	59, 258
CspAI	ACCGGT	1 cut(s)	78
CviAII	CATG	4 cut(s)	121, 350, 401, 473
CviJI	RGCY	6 cut(s)	31, 230, 309, 508, 520, 561
CviKI_1	RGCY	6 cut(s)	31, 230, 309, 508, 520, 561
CviQI	GTAC	2 cut(s)	59, 258
DdeI	CTNAG	1 cut(s)	304
DpnI	GATC	3 cut(s)	23, 399, 471
DpnII	GATC	3 cut(s)	21, 397, 469
Eam1104I	CTCTTC	2 cut(s)	110, 491
EarI	CTCTTC	2 cut(s)	110, 491
EciI	GGCGGA	1 cut(s)	53
Ecl136II	GAGCTC	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	232
Eco53kI	GAGCTC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	232
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	4 cut(s)	124, 353, 404, 476
FaiI	YATR	9 cut(s)	17, 69, 122, 192, 312, 351, 402, 474, 512
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	4 cut(s)	120, 349, 400, 472
FauI	CCCGC	1 cut(s)	49
Fnu4HI	GCNGC	2 cut(s)	145, 148
FokI	GGATG	5 cut(s)	115, 125, 263, 335, 466
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	2 cut(s)	145, 148
FspBI	CTAG	1 cut(s)	525
GluI	GCNGC	2 cut(s)	145, 148
HapII	CCGG	4 cut(s)	48, 79, 131, 268
Hin1II	CATG	4 cut(s)	124, 353, 404, 476
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	3 cut(s)	413, 448, 539
HpaII	CCGG	4 cut(s)	48, 79, 131, 268
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	546
Hpy188I	TCNGA	5 cut(s)	114, 214, 361, 412, 556
Hpy188III	TCNNGA	5 cut(s)	280, 401, 432, 452, 473
Hpy8I	GTNNAC	1 cut(s)	546
HpyAV	CCTTC	3 cut(s)	83, 217, 280
HpyCH4III	ACNGT	2 cut(s)	38, 368
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	2 cut(s)	12, 147
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	1 cut(s)	304
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	4 cut(s)	124, 353, 404, 476
Kzo9I	GATC	3 cut(s)	21, 397, 469
LguI	GCTCTTC	1 cut(s)	110
LmnI	GCTCC	3 cut(s)	49, 227, 235
Lsp1109I	GCAGC	2 cut(s)	131, 159
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	1 cut(s)	525
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	2 cut(s)	105, 238
MalI	GATC	3 cut(s)	23, 399, 471
MbiI	CCGCTC	1 cut(s)	44
MboI	GATC	3 cut(s)	21, 397, 469
MboII	GAAGA	7 cut(s)	127, 241, 302, 398, 436, 470, 508
MfeI	CAATTG	1 cut(s)	253
MhlI	GDGCHC	3 cut(s)	179, 232, 274
MluCI	AATT	5 cut(s)	72, 253, 336, 418, 490
MlyI	GAGTC	2 cut(s)	407, 548
MnlI	CCTC	3 cut(s)	93, 120, 313
MslI	CAYNNNNRTG	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	4 cut(s)	48, 79, 131, 268
MspR9I	CCNGG	3 cut(s)	48, 173, 269
MunI	CAATTG	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	144
NciI	CCSGG	2 cut(s)	48, 269
NdeII	GATC	3 cut(s)	21, 397, 469
NlaIII	CATG	4 cut(s)	124, 353, 404, 476
NlaIV	GGNNCC	1 cut(s)	178
PagI	TCATGA	2 cut(s)	400, 472
PasI	CCCWGGG	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 448
PfeI	GAWTC	1 cut(s)	448
PflFI	GACNNNGTC	1 cut(s)	438
PinAI	ACCGGT	1 cut(s)	78
PkrI	GCNGC	2 cut(s)	146, 149
PleI	GAGTC	2 cut(s)	407, 547
PpsI	GAGTC	2 cut(s)	407, 547
Ppu21I	YACGTR	1 cut(s)	58
Psp124BI	GAGCTC	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	178
PstI	CTGCAG	1 cut(s)	149
PsyI	GACNNNGTC	1 cut(s)	438
RsaI	GTAC	2 cut(s)	60, 259
RsaNI	GTAC	2 cut(s)	59, 258
RseI	CAYNNNNRTG	1 cut(s)	281
SacI	GAGCTC	1 cut(s)	232
SapI	GCTCTTC	1 cut(s)	110
SatI	GCNGC	2 cut(s)	145, 148
Sau3AI	GATC	3 cut(s)	21, 397, 469
SchI	GAGTC	2 cut(s)	407, 548
ScrFI	CCNGG	3 cut(s)	48, 173, 269
SduI	GDGCHC	3 cut(s)	179, 232, 274
SetI	ASST	6 cut(s)	60, 112, 191, 232, 510, 563
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	2 cut(s)	34, 145
SmiMI	CAYNNNNRTG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	562
SmoI	CTYRAG	1 cut(s)	562
Sse9I	AATT	5 cut(s)	72, 253, 336, 418, 490
SsiI	CCGC	3 cut(s)	42, 64, 142
SspMI	CTAG	1 cut(s)	525
SstI	GAGCTC	1 cut(s)	232
StyD4I	CCNGG	3 cut(s)	46, 171, 267
TaaI	ACNGT	2 cut(s)	38, 368
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	1 cut(s)	442
TasI	AATT	5 cut(s)	72, 253, 336, 418, 490
TfiI	GAWTC	1 cut(s)	448
TseI	GCWGC	2 cut(s)	144, 147
TspDTI	ATGAA	7 cut(s)	17, 299, 360, 399, 417, 471, 489
Tth111I	GACNNNGTC	1 cut(s)	438
XapI	RAATTY	2 cut(s)	72, 336
XspI	CTAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.