Rh7CG455900

Coiled-coil domain-containing protein 94 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0007557
Physical Location & Seq
Forward (+)
59966912 .. 59968961
2050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG455900.1

Sequence Viewer

Length: 471 bp
ATGATACTTCCGGTGAGCATCGGCTGCAGCACTTGTGCCAATCACATTGCCCAGGGCACCACTTTGACCTATGTAAAACGGCACGGCTTCTCCGAGACTTCTTTGGGAGCTCCAATAGTAACATTTGTCTTCAATTGTACCAAGTGCCGGGCACTCATCCAGATGAAGGAAGACCCAGAGAACTCAGGCTATGTTGTTGAGGATGGTGCTACAAATTTTTTTGATGAACATGAGAAATCAGAACACCGTGGCAAGATTAGTGATGAAGATGGTTTGGATCATGAAACATCTGACTCTAATTTGAAGAAATTTGGACATTATTGTCGAAAGATTCGTGATGAAGATGGTTTGGATCATGAAACATCCTACTCTAATTTGAAGAGACAAAAGTTTATGATTGGGCTTCCCAGCAACCCGACAGACGTGTTCACTATTTCGGATAGCTCAAGCACAGAGGTATGCTCGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF572

Protein Analysis

156

Amino Acids

17.38

Weight (kDa)

5.41

Isoelectric Point (pI)

37.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Saf4_Yju2 PF04502 1 - 95 7.6e-20 Saf4/Yju2 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 321
AccB1I GGYRCC 1 cut(s) 56
AclWI GGATC 2 cut(s) 285, 360
AcsI RAATTY 2 cut(s) 214, 308
AfaI GTAC 1 cut(s) 139
AfiI CCNNNNNNNGG 2 cut(s) 147, 166
AflIII ACRYGT 1 cut(s) 423
AgsI TTSAA 3 cut(s) 133, 304, 379
AjiI CACGTC 1 cut(s) 424
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 2 cut(s) 110, 444
AluI AGCT 2 cut(s) 110, 444
Alw21I GWGCWC 1 cut(s) 112
Alw26I GTCTC 2 cut(s) 89, 376
AlwI GGATC 2 cut(s) 285, 360
ApeKI GCWGC 2 cut(s) 24, 27
ApoI RAATTY 2 cut(s) 214, 308
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 25
BaeGI GKGCMC 2 cut(s) 59, 154
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 112
BbsI GAAGAC 2 cut(s) 121, 177
Bbv12I GWGCWC 1 cut(s) 112
BbvI GCAGC 2 cut(s) 11, 39
BccI CCATC 3 cut(s) 197, 263, 338
BceAI ACGGC 2 cut(s) 95, 100
BciT130I CCWGG 1 cut(s) 53
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 89, 376
BfmI CTRYAG 1 cut(s) 25
BisI GCNGC 2 cut(s) 25, 28
BlsI GCNGC 2 cut(s) 26, 29
Bme1390I CCNGG 2 cut(s) 53, 149
BmgBI CACGTC 1 cut(s) 424
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 2 cut(s) 53, 149
BmsI GCATC 1 cut(s) 27
BpiI GAAGAC 2 cut(s) 121, 177
BplI GAGNNNNNCTC 1 cut(s) 446
BpuEI CTTGAG 1 cut(s) 430
BpuMI CCSGG 1 cut(s) 149
BsaJI CCNNGG 3 cut(s) 51, 52, 247
BsaWI WCCGGW 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 166
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 3 cut(s) 51, 52, 247
BseGI GGATG 3 cut(s) 156, 208, 362
BseLI CCNNNNNNNGG 2 cut(s) 147, 166
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 198
BseSI GKGCMC 2 cut(s) 59, 154
BseXI GCAGC 2 cut(s) 11, 39
BseYI CCCAGC 1 cut(s) 407
BshNI GGYRCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 112
BsiSI CCGG 2 cut(s) 11, 148
BslI CCNNNNNNNGG 2 cut(s) 147, 166
BsmAI GTCTC 2 cut(s) 89, 376
Bsp1286I GDGCHC 3 cut(s) 59, 112, 154
Bsp143I GATC 2 cut(s) 277, 352
BspCNI CTCAG 1 cut(s) 197
BspHI TCATGA 2 cut(s) 280, 355
BspLI GGNNCC 1 cut(s) 58
BspMAI CTGCAG 1 cut(s) 29
BspPI GGATC 2 cut(s) 285, 360
BspT107I GGYRCC 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 45
BssECI CCNNGG 3 cut(s) 51, 52, 247
BssMI GATC 2 cut(s) 277, 352
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 248
Bst6I CTCTTC 1 cut(s) 374
BstAPI GCANNNNNTGC 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 464
BstDEI CTNAG 1 cut(s) 184
BstDSI CCRYGG 1 cut(s) 247
BstF5I GGATG 3 cut(s) 156, 208, 362
BstKTI GATC 2 cut(s) 280, 355
BstMAI GTCTC 2 cut(s) 89, 376
BstMBI GATC 2 cut(s) 277, 352
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 2 cut(s) 51, 147
BstSFI CTRYAG 1 cut(s) 25
BstSLI GKGCMC 2 cut(s) 59, 154
BstV1I GCAGC 2 cut(s) 11, 39
BstV2I GAAGAC 2 cut(s) 121, 177
BtgI CCRYGG 1 cut(s) 247
BtrI CACGTC 1 cut(s) 424
BtsCI GGATG 3 cut(s) 156, 208, 362
BtsIMutI CAGTG 1 cut(s) 466
Cac8I GCNNGC 1 cut(s) 464
CciI TCATGA 2 cut(s) 280, 355
Csp6I GTAC 1 cut(s) 138
CviAII CATG 3 cut(s) 230, 281, 356
CviJI RGCY 6 cut(s) 24, 87, 110, 189, 403, 444
CviKI_1 RGCY 6 cut(s) 24, 87, 110, 189, 403, 444
CviQI GTAC 1 cut(s) 138
DdeI CTNAG 1 cut(s) 184
DpnI GATC 2 cut(s) 279, 354
DpnII GATC 2 cut(s) 277, 352
DrdI GACNNNNNNGTC 1 cut(s) 321
DseDI GACNNNNNNGTC 1 cut(s) 321
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
Ecl136II GAGCTC 1 cut(s) 110
Eco24I GRGCYC 1 cut(s) 112
Eco53kI GAGCTC 1 cut(s) 110
EcoICRI GAGCTC 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 112
FaeI CATG 3 cut(s) 233, 284, 359
FaiI YATR 7 cut(s) 72, 192, 231, 282, 357, 395, 460
FatI CATG 3 cut(s) 229, 280, 355
Fnu4HI GCNGC 2 cut(s) 25, 28
FokI GGATG 3 cut(s) 143, 215, 349
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 2 cut(s) 25, 28
GluI GCNGC 2 cut(s) 25, 28
GsaI CCCAGC 1 cut(s) 411
HapII CCGG 2 cut(s) 11, 148
Hin1II CATG 3 cut(s) 233, 284, 359
HinfI GANTC 2 cut(s) 293, 331
HpaII CCGG 2 cut(s) 11, 148
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 429
Hpy188I TCNGA 4 cut(s) 94, 241, 292, 439
Hpy188III TCNNGA 4 cut(s) 160, 281, 335, 356
Hpy8I GTNNAC 1 cut(s) 429
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 1 cut(s) 27
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpyF3I CTNAG 1 cut(s) 184
HpySE526I ACGT 1 cut(s) 423
Hsp92II CATG 3 cut(s) 233, 284, 359
Kzo9I GATC 2 cut(s) 277, 352
LmnI GCTCC 2 cut(s) 107, 115
LpnPI CCDG 8 cut(s) 24, 38, 65, 161, 171, 173, 189, 421
Lsp1109I GCAGC 2 cut(s) 11, 39
LweI GCATC 1 cut(s) 27
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 1 cut(s) 118
MalI GATC 2 cut(s) 279, 354
MboI GATC 2 cut(s) 277, 352
MboII GAAGA 6 cut(s) 121, 182, 278, 316, 353, 391
MfeI CAATTG 1 cut(s) 133
MhlI GDGCHC 3 cut(s) 59, 112, 154
MluCI AATT 5 cut(s) 133, 214, 298, 308, 373
MlyI GAGTC 1 cut(s) 287
MnlI CCTC 2 cut(s) 193, 448
MslI CAYNNNNRTG 1 cut(s) 161
MspI CCGG 2 cut(s) 11, 148
MspR9I CCNGG 2 cut(s) 53, 149
MunI CAATTG 1 cut(s) 133
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 24
NciI CCSGG 1 cut(s) 149
NdeII GATC 2 cut(s) 277, 352
NlaIII CATG 3 cut(s) 233, 284, 359
NlaIV GGNNCC 1 cut(s) 58
PagI TCATGA 2 cut(s) 280, 355
PasI CCCWGGG 1 cut(s) 52
PcsI WCGNNNNNNNCGW 2 cut(s) 90, 331
PfeI GAWTC 1 cut(s) 331
PkrI GCNGC 2 cut(s) 26, 29
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
Psp124BI GAGCTC 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 58
PstI CTGCAG 1 cut(s) 29
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
RseI CAYNNNNRTG 1 cut(s) 161
SacI GAGCTC 1 cut(s) 112
SatI GCNGC 2 cut(s) 25, 28
Sau3AI GATC 2 cut(s) 277, 352
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 2 cut(s) 53, 149
SduI GDGCHC 3 cut(s) 59, 112, 154
SetI ASST 5 cut(s) 71, 112, 426, 446, 459
SfaNI GCATC 1 cut(s) 27
SfcI CTRYAG 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
Sse9I AATT 5 cut(s) 133, 214, 298, 308, 373
SstI GAGCTC 1 cut(s) 112
StyD4I CCNGG 2 cut(s) 51, 147
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 1 cut(s) 426
TaqI TCGA 1 cut(s) 325
TasI AATT 5 cut(s) 133, 214, 298, 308, 373
TfiI GAWTC 1 cut(s) 331
TseI GCWGC 2 cut(s) 24, 27
TspDTI ATGAA 6 cut(s) 179, 240, 279, 297, 354, 372
XapI RAATTY 2 cut(s) 214, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.