Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024703.1

Orthogroup ID

OG0007557

Physical Location & Seq

Genomic Coordinates Forward (+)

15893 .. 19122

Gene Structure 3230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024703.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atgtcgaagaggtttggtaatctgttgatcggcaagccctacagtttcactgtcggcgccaatgtcatccgccgtagaatttacctgttccgcgaaggggagaggagcatgatacttccggtgagcatccgctgcaacacttgtgccaatcgcatgctccaaggcaccactttgaactatgtaagacgacgccccctctccaagacttctttgggagctccaatagttacatttttcttcaattgtaccaagtgccgggcactcatccggatgaaggaagacccagagaattcaggctatgttgttgaggatggtgctgcagaagttcttgaacatgagaaatcagaacaccttggaaagattcgtgatgaagatggtttggatgctgaaacatctgactctaatttgaagaaatctgggcatcatcgaaggattcatgatgaagctggcttagattatgaaacatccgactctgatttgaagagacaaaagcttatgattgggcttcctagcaacccaacagagtcgttcactctttcggatggctcaagcacagagctagtctttccccatgtgggcaatgagaatttcgattgtgaattgctctcgagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF572

Protein Analysis

204

Amino Acids

23.03

Weight (kDa)

7.01

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007557)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0233381 RchiOBHm_Chr7g0233401
rosa_laevigata	RLG00000001273 RLG00000024849
rosa_multiflora	Rmu_sc0003624.1_g000022 Rmu_sc0006414.1_g000014 Rmu_sc0008806.1_g000008 Rmu_sc0017965.1_g000001 Rmu_sc0024703.1_g000004 Rmu_sc0036637.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417400
rosa_rugosa	Rorug03G0057600
rosa_samantha	Rh3BG119000 Rh3CG122400 Rh3DG121100 Rh4BG223600 Rh4DG220700 Rh7AG436200 Rh7CG455600 Rh7CG455900
rosa_wichuraiana	Rw3G009790 Rw4G019070 Rw7G035940 Rw7G035950 Rw7G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	56, 164
AccII	CGCG	1 cut(s)	93
AccIII	TCCGGA	1 cut(s)	267
AciI	CCGC	3 cut(s)	70, 91, 130
AcsI	RAATTY	3 cut(s)	78, 289, 586
AcyI	GRCGYC	2 cut(s)	57, 190
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	4 cut(s)	97, 255, 274, 575
AgsI	TTSAA	5 cut(s)	175, 241, 332, 409, 481
AluBI	AGCT	4 cut(s)	218, 446, 493, 559
AluI	AGCT	4 cut(s)	218, 446, 493, 559
Alw21I	GWGCWC	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	478
Ama87I	CYCGRG	1 cut(s)	607
Aor13HI	TCCGGA	1 cut(s)	267
ApeKI	GCWGC	2 cut(s)	132, 317
ApoI	RAATTY	3 cut(s)	78, 289, 586
AspLEI	GCGC	1 cut(s)	59
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	607
BaeGI	GKGCMC	1 cut(s)	262
BanI	GGYRCC	2 cut(s)	56, 164
BanII	GRGCYC	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	220
BbvI	GCAGC	2 cut(s)	119, 304
BccI	CCATC	3 cut(s)	305, 368, 536
BceAI	ACGGC	1 cut(s)	57
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	1 cut(s)	478
BfaI	CTAG	2 cut(s)	510, 560
BfmI	CTRYAG	2 cut(s)	40, 318
BfoI	RGCGCY	1 cut(s)	60
BisI	GCNGC	2 cut(s)	133, 318
BlsI	GCNGC	2 cut(s)	134, 319
Bme1390I	CCNGG	1 cut(s)	257
BmeT110I	CYCGRG	1 cut(s)	607
BmiI	GGNNCC	2 cut(s)	58, 166
BmrFI	CCNGG	1 cut(s)	257
BmsI	GCATC	3 cut(s)	135, 373, 430
BpiI	GAAGAC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	532
BpuMI	CCSGG	1 cut(s)	257
BsaHI	GRCGYC	2 cut(s)	57, 190
BsaJI	CCNNGG	2 cut(s)	160, 352
BsaWI	WCCGGW	2 cut(s)	118, 267
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 255, 274, 575
Bse3DI	GCAATG	1 cut(s)	586
BseAI	TCCGGA	1 cut(s)	267
BseDI	CCNNGG	2 cut(s)	160, 352
BseGI	GGATG	8 cut(s)	66, 126, 264, 276, 316, 388, 464, 547
BseLI	CCNNNNNNNGG	4 cut(s)	97, 255, 274, 575
BseMI	GCAATG	1 cut(s)	586
BseRI	GAGGAG	1 cut(s)	118
BseSI	GKGCMC	1 cut(s)	262
BseXI	GCAGC	2 cut(s)	119, 304
Bsh1236I	CGCG	1 cut(s)	93
BshNI	GGYRCC	2 cut(s)	56, 164
BsiHKAI	GWGCWC	1 cut(s)	220
BsiHKCI	CYCGRG	1 cut(s)	607
BsiSI	CCGG	3 cut(s)	119, 256, 268
BslI	CCNNNNNNNGG	4 cut(s)	97, 255, 274, 575
BsmAI	GTCTC	1 cut(s)	478
BsoBI	CYCGRG	1 cut(s)	607
Bsp1286I	GDGCHC	2 cut(s)	220, 262
Bsp13I	TCCGGA	1 cut(s)	267
Bsp143I	GATC	1 cut(s)	27
BspACI	CCGC	3 cut(s)	70, 91, 130
BspEI	TCCGGA	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	93
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	58, 166
BspMAI	CTGCAG	1 cut(s)	322
BspT107I	GGYRCC	2 cut(s)	56, 164
BsrDI	GCAATG	1 cut(s)	586
BssECI	CCNNGG	2 cut(s)	160, 352
BssMI	GATC	1 cut(s)	27
BssNI	GRCGYC	2 cut(s)	57, 190
BssT1I	CCWWGG	2 cut(s)	160, 352
Bst4CI	ACNGT	2 cut(s)	44, 52
Bst6I	CTCTTC	2 cut(s)	2, 476
BstACI	GRCGYC	2 cut(s)	57, 190
BstAPI	GCANNNNNTGC	1 cut(s)	132
BstC8I	GCNNGC	3 cut(s)	35, 155, 448
BstDEI	CTNAG	1 cut(s)	451
BstF5I	GGATG	8 cut(s)	66, 126, 264, 276, 316, 388, 464, 547
BstFNI	CGCG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	1 cut(s)	478
BstMBI	GATC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	255
BstSFI	CTRYAG	2 cut(s)	40, 318
BstSLI	GKGCMC	1 cut(s)	262
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	2 cut(s)	119, 304
BstV2I	GAAGAC	1 cut(s)	285
BtsCI	GGATG	8 cut(s)	66, 126, 264, 276, 316, 388, 464, 547
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	3 cut(s)	35, 155, 448
CciI	TCATGA	1 cut(s)	436
CfoI	GCGC	1 cut(s)	59
CseI	GACGC	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	246
CviAII	CATG	5 cut(s)	109, 154, 335, 437, 572
CviJI	RGCY	9 cut(s)	37, 218, 297, 446, 450, 493, 505, 546, 559
CviKI_1	RGCY	9 cut(s)	37, 218, 297, 446, 450, 493, 505, 546, 559
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	1 cut(s)	451
DinI	GGCGCC	1 cut(s)	58
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
Eam1104I	CTCTTC	2 cut(s)	2, 476
EarI	CTCTTC	2 cut(s)	2, 476
EciI	GGCGGA	1 cut(s)	59
Ecl136II	GAGCTC	1 cut(s)	218
Eco130I	CCWWGG	2 cut(s)	160, 352
Eco24I	GRGCYC	1 cut(s)	220
Eco53kI	GAGCTC	1 cut(s)	218
Eco88I	CYCGRG	1 cut(s)	607
EcoICRI	GAGCTC	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	160, 352
EcoT38I	GRGCYC	1 cut(s)	220
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
ErhI	CCWWGG	2 cut(s)	160, 352
FaeI	CATG	5 cut(s)	112, 157, 338, 440, 575
FaiI	YATR	9 cut(s)	110, 155, 180, 300, 336, 438, 459, 497, 573
FatI	CATG	5 cut(s)	108, 153, 334, 436, 571
Fnu4HI	GCNGC	2 cut(s)	133, 318
FokI	GGATG	8 cut(s)	53, 113, 251, 283, 323, 395, 451, 554
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	2 cut(s)	133, 318
FspBI	CTAG	2 cut(s)	510, 560
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	2 cut(s)	133, 318
HaeII	RGCGCY	1 cut(s)	60
HapII	CCGG	3 cut(s)	119, 256, 268
HgaI	GACGC	1 cut(s)	198
HhaI	GCGC	1 cut(s)	59
Hin1I	GRCGYC	2 cut(s)	57, 190
Hin1II	CATG	5 cut(s)	112, 157, 338, 440, 575
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	5 cut(s)	361, 398, 433, 470, 524
HpaII	CCGG	3 cut(s)	119, 256, 268
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	531
Hpy188I	TCNGA	5 cut(s)	346, 397, 469, 475, 541
Hpy188III	TCNNGA	6 cut(s)	268, 329, 365, 437, 607, 609
Hpy8I	GTNNAC	1 cut(s)	531
Hpy99I	CGWCG	1 cut(s)	192
HpyAV	CCTTC	3 cut(s)	89, 268, 423
HpyCH4III	ACNGT	2 cut(s)	44, 52
HpyCH4V	TGCA	2 cut(s)	135, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	1 cut(s)	451
Hsp92I	GRCGYC	2 cut(s)	57, 190
Hsp92II	CATG	5 cut(s)	112, 157, 338, 440, 575
HspAI	GCGC	1 cut(s)	57
KasI	GGCGCC	1 cut(s)	56
Kpn2I	TCCGGA	1 cut(s)	267
Kzo9I	GATC	1 cut(s)	27
LmnI	GCTCC	4 cut(s)	105, 162, 215, 223
LpnPI	CCDG	8 cut(s)	98, 132, 269, 279, 281, 297, 402, 432
Lsp1109I	GCAGC	2 cut(s)	119, 304
LweI	GCATC	3 cut(s)	135, 373, 430
MaeI	CTAG	2 cut(s)	510, 560
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	6 cut(s)	19, 229, 290, 383, 421, 493
MfeI	CAATTG	1 cut(s)	241
MhlI	GDGCHC	2 cut(s)	220, 262
MluCI	AATT	6 cut(s)	78, 241, 289, 403, 586, 599
Mly113I	GGCGCC	1 cut(s)	57
MlyI	GAGTC	3 cut(s)	392, 464, 533
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	4 cut(s)	3, 96, 206, 301
MroI	TCCGGA	1 cut(s)	267
MslI	CAYNNNNRTG	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	132
MspI	CCGG	3 cut(s)	119, 256, 268
MspR9I	CCNGG	1 cut(s)	257
MunI	CAATTG	1 cut(s)	241
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	132
NarI	GGCGCC	1 cut(s)	57
NciI	CCSGG	1 cut(s)	257
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	5 cut(s)	112, 157, 338, 440, 575
NlaIV	GGNNCC	2 cut(s)	58, 166
NspI	RCATGY	1 cut(s)	157
PaeI	GCATGC	1 cut(s)	157
PaeR7I	CTCGAG	1 cut(s)	607
PagI	TCATGA	1 cut(s)	436
PfeI	GAWTC	2 cut(s)	361, 433
PkrI	GCNGC	2 cut(s)	134, 319
PleI	GAGTC	3 cut(s)	392, 464, 532
PluTI	GGCGCC	1 cut(s)	60
PpsI	GAGTC	3 cut(s)	392, 464, 532
Psp124BI	GAGCTC	1 cut(s)	220
PspN4I	GGNNCC	2 cut(s)	58, 166
PstI	CTGCAG	1 cut(s)	322
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
RseI	CAYNNNNRTG	1 cut(s)	269
SacI	GAGCTC	1 cut(s)	220
SatI	GCNGC	2 cut(s)	133, 318
Sau3AI	GATC	1 cut(s)	27
SchI	GAGTC	3 cut(s)	392, 464, 533
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	2 cut(s)	220, 262
SetI	ASST	7 cut(s)	14, 87, 220, 354, 448, 495, 561
SfaNI	GCATC	3 cut(s)	135, 373, 430
SfcI	CTRYAG	2 cut(s)	40, 318
SfoI	GGCGCC	1 cut(s)	58
Sfr274I	CTCGAG	1 cut(s)	607
SlaI	CTCGAG	1 cut(s)	607
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	2 cut(s)	547, 607
SmoI	CTYRAG	2 cut(s)	547, 607
SphI	GCATGC	1 cut(s)	157
Sse9I	AATT	6 cut(s)	78, 241, 289, 403, 586, 599
SsiI	CCGC	3 cut(s)	70, 91, 130
SspDI	GGCGCC	1 cut(s)	56
SspMI	CTAG	2 cut(s)	510, 560
SstI	GAGCTC	1 cut(s)	220
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	2 cut(s)	160, 352
TaaI	ACNGT	2 cut(s)	44, 52
TaqI	TCGA	4 cut(s)	5, 427, 591, 608
TasI	AATT	6 cut(s)	78, 241, 289, 403, 586, 599
TfiI	GAWTC	2 cut(s)	361, 433
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	2 cut(s)	132, 317
TspDTI	ATGAA	5 cut(s)	287, 384, 425, 456, 474
TspRI	CASTG	1 cut(s)	55
XapI	RAATTY	3 cut(s)	78, 289, 586
XceI	RCATGY	1 cut(s)	157
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XhoI	CTCGAG	1 cut(s)	607
XspI	CTAG	2 cut(s)	510, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.