Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006414.1

Orthogroup ID

OG0007557

Physical Location & Seq

Genomic Coordinates Forward (+)

51031 .. 51552

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006414.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgatacttccggtgagcatccgctgcaacacttgtgccaatcgcatgccccaaggcaccactttgaactatgtaagacgacgcccccccctctccgagacttcaatagttacatttttcttcaattgtaccaagtgccgggcactcatccagatgaaggaagacccagagaattcaggccatgttgttgaggatggtgctacagaagttcttgaacatgagaaatcagaacaccttggaaagattcatgatgaagatggtttggatcatgaaacatctgactctaatttgaagaaatcagaacaccttggaaagattcgtgatgaagatggtttggatcctgaaacatctgactctaatttgaagaaatctgggcatcatcgaaagattcatgatgaagctggcttagattatgaaacatccgactctgatttgaagagacaaaagcttatgattgggcttcctagcaacccaacagagtcgttcactctttcggatagctcacgcacagaggtatgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF572

Protein Analysis

173

Amino Acids

19.45

Weight (kDa)

5.34

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007557)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0233381 RchiOBHm_Chr7g0233401
rosa_laevigata	RLG00000001273 RLG00000024849
rosa_multiflora	Rmu_sc0003624.1_g000022 Rmu_sc0006414.1_g000014 Rmu_sc0008806.1_g000008 Rmu_sc0017965.1_g000001 Rmu_sc0024703.1_g000004 Rmu_sc0036637.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417400
rosa_rugosa	Rorug03G0057600
rosa_samantha	Rh3BG119000 Rh3CG122400 Rh3DG121100 Rh4BG223600 Rh4DG220700 Rh7AG436200 Rh7CG455600 Rh7CG455900
rosa_wichuraiana	Rw3G009790 Rw4G019070 Rw7G035940 Rw7G035950 Rw7G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	56
AciI	CCGC	1 cut(s)	22
AclWI	GGATC	3 cut(s)	273, 332, 345
AcsI	RAATTY	1 cut(s)	172
AcyI	GRCGYC	1 cut(s)	82
AfaI	GTAC	1 cut(s)	130
AfiI	CCNNNNNNNGG	2 cut(s)	138, 157
AgsI	TTSAA	7 cut(s)	67, 105, 124, 215, 292, 364, 436
AluBI	AGCT	3 cut(s)	401, 448, 501
AluI	AGCT	3 cut(s)	401, 448, 501
Alw26I	GTCTC	2 cut(s)	92, 433
AlwI	GGATC	3 cut(s)	273, 332, 345
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	1 cut(s)	172
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	25
BaeGI	GKGCMC	1 cut(s)	145
BamHI	GGATCC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	11
BccI	CCATC	3 cut(s)	188, 251, 323
BcnI	CCSGG	1 cut(s)	140
BcoDI	GTCTC	2 cut(s)	92, 433
BfaI	CTAG	2 cut(s)	465, 520
BfmI	CTRYAG	1 cut(s)	201
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
Bme1390I	CCNGG	1 cut(s)	140
BmiI	GGNNCC	2 cut(s)	58, 339
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	2 cut(s)	27, 385
BpiI	GAAGAC	1 cut(s)	168
BpuMI	CCSGG	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	82
BsaJI	CCNNGG	3 cut(s)	52, 235, 307
BsaWI	WCCGGW	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 157
BseDI	CCNNGG	3 cut(s)	52, 235, 307
BseGI	GGATG	4 cut(s)	18, 147, 199, 419
BseLI	CCNNNNNNNGG	2 cut(s)	138, 157
BseSI	GKGCMC	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	11
BshFI	GGCC	1 cut(s)	180
BshNI	GGYRCC	1 cut(s)	56
BsiSI	CCGG	2 cut(s)	11, 139
BslI	CCNNNNNNNGG	2 cut(s)	138, 157
BsmAI	GTCTC	2 cut(s)	92, 433
BsnI	GGCC	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	265, 337
BspACI	CCGC	1 cut(s)	22
BspANI	GGCC	1 cut(s)	180
BspHI	TCATGA	3 cut(s)	247, 268, 391
BspLI	GGNNCC	2 cut(s)	58, 339
BspPI	GGATC	3 cut(s)	273, 332, 345
BspT107I	GGYRCC	1 cut(s)	56
BssECI	CCNNGG	3 cut(s)	52, 235, 307
BssMI	GATC	2 cut(s)	265, 337
BssNI	GRCGYC	1 cut(s)	82
BssT1I	CCWWGG	3 cut(s)	52, 235, 307
Bst6I	CTCTTC	1 cut(s)	431
BstACI	GRCGYC	1 cut(s)	82
BstAPI	GCANNNNNTGC	1 cut(s)	24
BstC8I	GCNNGC	2 cut(s)	47, 403
BstDEI	CTNAG	1 cut(s)	406
BstF5I	GGATG	4 cut(s)	18, 147, 199, 419
BstKTI	GATC	2 cut(s)	268, 340
BstMAI	GTCTC	2 cut(s)	92, 433
BstMBI	GATC	2 cut(s)	265, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	138
BstSFI	CTRYAG	1 cut(s)	201
BstSLI	GKGCMC	1 cut(s)	145
BstV1I	GCAGC	1 cut(s)	11
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	180
BtsCI	GGATG	4 cut(s)	18, 147, 199, 419
Cac8I	GCNNGC	2 cut(s)	47, 403
CciI	TCATGA	3 cut(s)	247, 268, 391
CseI	GACGC	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	6 cut(s)	46, 182, 218, 248, 269, 392
CviJI	RGCY	6 cut(s)	180, 401, 405, 448, 460, 501
CviKI_1	RGCY	6 cut(s)	180, 401, 405, 448, 460, 501
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	1 cut(s)	406
DpnI	GATC	2 cut(s)	267, 339
DpnII	GATC	2 cut(s)	265, 337
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
Eco130I	CCWWGG	3 cut(s)	52, 235, 307
EcoRI	GAATTC	1 cut(s)	172
EcoT14I	CCWWGG	3 cut(s)	52, 235, 307
ErhI	CCWWGG	3 cut(s)	52, 235, 307
FaeI	CATG	6 cut(s)	49, 185, 221, 251, 272, 395
FatI	CATG	6 cut(s)	45, 181, 217, 247, 268, 391
Fnu4HI	GCNGC	1 cut(s)	25
FokI	GGATG	4 cut(s)	5, 134, 206, 406
Fsp4HI	GCNGC	1 cut(s)	25
FspBI	CTAG	2 cut(s)	465, 520
GluI	GCNGC	1 cut(s)	25
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	2 cut(s)	11, 139
HgaI	GACGC	1 cut(s)	90
Hin1I	GRCGYC	1 cut(s)	82
Hin1II	CATG	6 cut(s)	49, 185, 221, 251, 272, 395
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	7 cut(s)	244, 281, 316, 353, 388, 425, 479
HpaII	CCGG	2 cut(s)	11, 139
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	486
Hpy188I	TCNGA	8 cut(s)	97, 229, 280, 301, 352, 424, 430, 496
Hpy188III	TCNNGA	7 cut(s)	151, 212, 248, 269, 320, 341, 392
Hpy8I	GTNNAC	1 cut(s)	486
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	1 cut(s)	151
HpyCH4V	TGCA	1 cut(s)	27
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	1 cut(s)	406
Hsp92I	GRCGYC	1 cut(s)	82
Hsp92II	CATG	6 cut(s)	49, 185, 221, 251, 272, 395
Kzo9I	GATC	2 cut(s)	265, 337
LpnPI	CCDG	8 cut(s)	24, 152, 162, 164, 180, 354, 357, 387
Lsp1109I	GCAGC	1 cut(s)	11
LweI	GCATC	2 cut(s)	27, 385
MaeI	CTAG	2 cut(s)	465, 520
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	2 cut(s)	267, 339
MboI	GATC	2 cut(s)	265, 337
MboII	GAAGA	7 cut(s)	112, 173, 266, 304, 338, 376, 448
MfeI	CAATTG	1 cut(s)	124
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	4 cut(s)	124, 172, 286, 358
MlyI	GAGTC	4 cut(s)	275, 347, 419, 488
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	3 cut(s)	101, 184, 505
MslI	CAYNNNNRTG	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	24
MspI	CCGG	2 cut(s)	11, 139
MspR9I	CCNGG	1 cut(s)	140
MunI	CAATTG	1 cut(s)	124
MwoI	GCNNNNNNNGC	1 cut(s)	24
NciI	CCSGG	1 cut(s)	140
NdeII	GATC	2 cut(s)	265, 337
NlaIII	CATG	6 cut(s)	49, 185, 221, 251, 272, 395
NlaIV	GGNNCC	2 cut(s)	58, 339
NspI	RCATGY	1 cut(s)	49
PaeI	GCATGC	1 cut(s)	49
PagI	TCATGA	3 cut(s)	247, 268, 391
PfeI	GAWTC	3 cut(s)	244, 316, 388
PkrI	GCNGC	1 cut(s)	26
PleI	GAGTC	4 cut(s)	275, 347, 419, 487
PpsI	GAGTC	4 cut(s)	275, 347, 419, 487
PspN4I	GGNNCC	2 cut(s)	58, 339
PsuI	RGATCY	1 cut(s)	337
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
RseI	CAYNNNNRTG	1 cut(s)	152
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	2 cut(s)	265, 337
SchI	GAGTC	4 cut(s)	275, 347, 419, 488
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	6 cut(s)	237, 309, 403, 450, 503, 516
SfaNI	GCATC	2 cut(s)	27, 385
SfcI	CTRYAG	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	152
SphI	GCATGC	1 cut(s)	49
Sse9I	AATT	4 cut(s)	124, 172, 286, 358
SsiI	CCGC	1 cut(s)	22
SspMI	CTAG	2 cut(s)	465, 520
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	3 cut(s)	52, 235, 307
TaqI	TCGA	1 cut(s)	382
TasI	AATT	4 cut(s)	124, 172, 286, 358
TfiI	GAWTC	3 cut(s)	244, 316, 388
TseI	GCWGC	1 cut(s)	24
TspDTI	ATGAA	8 cut(s)	170, 236, 267, 285, 339, 380, 411, 429
XapI	RAATTY	1 cut(s)	172
XceI	RCATGY	1 cut(s)	49
XspI	CTAG	2 cut(s)	465, 520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.