Rw3G009790

Coiled-coil domain-containing protein 94 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0007557
Physical Location & Seq
Forward (+)
9404238 .. 9404543
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G009790.1

Sequence Viewer

Length: 306 bp
ATGATACTTCCGGTGAGCATCCGGTGCACCACTTGTACCAATCACATGCCCCAAGGCACCACTTTGACCTATGTAAGACGACGCACCCTCTCCAAGACTTCTTTGGGAGCTCCAATAGTTATATTTTTCTTCAATTGTACCAAATGCCGGGCAAATATCCAGATGAAGGAAGACCCAGAGAATTCAGGCCATGTTGTTGAGGATGGTACTACAGAAATTTTTGAACATGAGAAATCAGAACACCTTGGAAAGATAGGTGATGAAGATGGTTTAATTTGGAACATGAAACATCCGACTCTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF572

Protein Analysis

101

Amino Acids

11.43

Weight (kDa)

6.5

Isoelectric Point (pI)

54.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Saf4_Yju2 PF04502 1 - 80 2.1e-16 Saf4/Yju2 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AcsI RAATTY 2 cut(s) 181, 216
AfaI GTAC 3 cut(s) 37, 139, 208
AfiI CCNNNNNNNGG 2 cut(s) 147, 166
AgsI TTSAA 2 cut(s) 133, 224
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw21I GWGCWC 2 cut(s) 29, 112
Alw44I GTGCAC 1 cut(s) 25
AoxI GGCC 1 cut(s) 187
ApaLI GTGCAC 1 cut(s) 25
ApoI RAATTY 2 cut(s) 181, 216
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 2 cut(s) 25, 269
BaeGI GKGCMC 1 cut(s) 29
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 177
Bbv12I GWGCWC 2 cut(s) 29, 112
BccI CCATC 2 cut(s) 197, 260
BcnI CCSGG 1 cut(s) 149
BfmI CTRYAG 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 27
BpiI GAAGAC 1 cut(s) 177
BpuMI CCSGG 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 52, 244
BsaWI WCCGGW 2 cut(s) 10, 21
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 166
BseDI CCNNGG 2 cut(s) 52, 244
BseGI GGATG 3 cut(s) 18, 208, 289
BseLI CCNNNNNNNGG 2 cut(s) 147, 166
BseSI GKGCMC 1 cut(s) 29
BshFI GGCC 1 cut(s) 189
BshNI GGYRCC 1 cut(s) 56
BsiHKAI GWGCWC 2 cut(s) 29, 112
BsiSI CCGG 3 cut(s) 11, 22, 148
BslI CCNNNNNNNGG 2 cut(s) 147, 166
BsnI GGCC 1 cut(s) 189
Bsp1286I GDGCHC 2 cut(s) 29, 112
BspANI GGCC 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 56
BssECI CCNNGG 2 cut(s) 52, 244
BssT1I CCWWGG 2 cut(s) 52, 244
BstAPI GCANNNNNTGC 1 cut(s) 24
BstF5I GGATG 3 cut(s) 18, 208, 289
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNSI RCATGY 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 147
BstSFI CTRYAG 1 cut(s) 210
BstSLI GKGCMC 1 cut(s) 29
BstV2I GAAGAC 1 cut(s) 177
BsuRI GGCC 1 cut(s) 189
BtsCI GGATG 3 cut(s) 18, 208, 289
CseI GACGC 1 cut(s) 90
Csp6I GTAC 3 cut(s) 36, 138, 207
CviAII CATG 4 cut(s) 46, 191, 227, 283
CviJI RGCY 2 cut(s) 110, 189
CviKI_1 RGCY 2 cut(s) 110, 189
CviQI GTAC 3 cut(s) 36, 138, 207
Ecl136II GAGCTC 1 cut(s) 110
Eco130I CCWWGG 2 cut(s) 52, 244
Eco24I GRGCYC 1 cut(s) 112
Eco53kI GAGCTC 1 cut(s) 110
EcoICRI GAGCTC 1 cut(s) 110
EcoRI GAATTC 1 cut(s) 181
EcoT14I CCWWGG 2 cut(s) 52, 244
EcoT38I GRGCYC 1 cut(s) 112
ErhI CCWWGG 2 cut(s) 52, 244
FaeI CATG 4 cut(s) 49, 194, 230, 286
FaiI YATR 6 cut(s) 47, 72, 122, 192, 228, 284
FatI CATG 4 cut(s) 45, 190, 226, 282
FokI GGATG 3 cut(s) 5, 215, 276
FriOI GRGCYC 1 cut(s) 112
HaeIII GGCC 1 cut(s) 189
HapII CCGG 3 cut(s) 11, 22, 148
HgaI GACGC 1 cut(s) 90
Hin1II CATG 4 cut(s) 49, 194, 230, 286
HinfI GANTC 1 cut(s) 295
HpaII CCGG 3 cut(s) 11, 22, 148
HphI GGTGA 2 cut(s) 25, 269
Hpy166II GTNNAC 1 cut(s) 27
Hpy188I TCNGA 2 cut(s) 238, 294
Hpy188III TCNNGA 1 cut(s) 160
Hpy8I GTNNAC 1 cut(s) 27
Hpy99I CGWCG 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 27
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
Hsp92II CATG 4 cut(s) 49, 194, 230, 286
LmnI GCTCC 2 cut(s) 107, 115
LpnPI CCDG 6 cut(s) 24, 35, 161, 171, 173, 189
LweI GCATC 1 cut(s) 27
MboII GAAGA 3 cut(s) 121, 182, 275
MfeI CAATTG 1 cut(s) 133
MhlI GDGCHC 2 cut(s) 29, 112
MluCI AATT 5 cut(s) 133, 181, 216, 273, 300
MlyI GAGTC 1 cut(s) 289
MnlI CCTC 2 cut(s) 98, 193
MseI TTAA 1 cut(s) 272
MspI CCGG 3 cut(s) 11, 22, 148
MspR9I CCNGG 1 cut(s) 149
MunI CAATTG 1 cut(s) 133
MwoI GCNNNNNNNGC 1 cut(s) 24
NciI CCSGG 1 cut(s) 149
NlaIII CATG 4 cut(s) 49, 194, 230, 286
NlaIV GGNNCC 1 cut(s) 58
NspI RCATGY 1 cut(s) 49
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
Psp124BI GAGCTC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 58
RsaI GTAC 3 cut(s) 37, 139, 208
RsaNI GTAC 3 cut(s) 36, 138, 207
SacI GAGCTC 1 cut(s) 112
SaqAI TTAA 1 cut(s) 272
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 2 cut(s) 29, 112
SetI ASST 4 cut(s) 71, 112, 246, 259
SfaNI GCATC 1 cut(s) 27
SfcI CTRYAG 1 cut(s) 210
Sse9I AATT 5 cut(s) 133, 181, 216, 273, 300
SstI GAGCTC 1 cut(s) 112
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 2 cut(s) 52, 244
TasI AATT 5 cut(s) 133, 181, 216, 273, 300
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TspDTI ATGAA 3 cut(s) 179, 276, 299
VneI GTGCAC 1 cut(s) 25
XapI RAATTY 2 cut(s) 181, 216
XceI RCATGY 1 cut(s) 49
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.