Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003624.1

Orthogroup ID

OG0007557

Physical Location & Seq

Genomic Coordinates Forward (+)

79582 .. 80007

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003624.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgaggtttgggcatatgttggtcgacaagccctacggtctcactaccagcgtcaacgtaatccgccataaaatttaccggttccgggaaggagagaagaggtggttaccgctgaagagcatgatacttccggtgagcctccggtgcaccacttgtaccaatcacatgcccctaggcaccactttgacctatgtaagacgacgcaccctctccaagacttctttgggagctccaataattatatttttcttcaattgtaccaaatgccgggcaaatatccagatgaaggaagacccagagaattcaggccatgttgttgaggatggtactacagaaatttttgaacatgagaaatcagaacaccttggaaagattggtgatgaagatggtttaatttggatcatgaaacatctgactctaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF572

Protein Analysis

141

Amino Acids

16.29

Weight (kDa)

9.16

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007557)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0233381 RchiOBHm_Chr7g0233401
rosa_laevigata	RLG00000001273 RLG00000024849
rosa_multiflora	Rmu_sc0003624.1_g000022 Rmu_sc0006414.1_g000014 Rmu_sc0008806.1_g000008 Rmu_sc0017965.1_g000001 Rmu_sc0024703.1_g000004 Rmu_sc0036637.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417400
rosa_rugosa	Rorug03G0057600
rosa_samantha	Rh3BG119000 Rh3CG122400 Rh3DG121100 Rh4BG223600 Rh4DG220700 Rh7AG436200 Rh7CG455600 Rh7CG455900
rosa_wichuraiana	Rw3G009790 Rw4G019070 Rw7G035940 Rw7G035950 Rw7G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	24
AciI	CCGC	2 cut(s)	64, 110
AclWI	GGATC	1 cut(s)	407
AcsI	RAATTY	3 cut(s)	72, 301, 336
AcuI	CTGAAG	1 cut(s)	134
AfaI	GTAC	3 cut(s)	157, 259, 328
AfiI	CCNNNNNNNGG	3 cut(s)	85, 267, 286
AgeI	ACCGGT	1 cut(s)	78
AgsI	TTSAA	2 cut(s)	253, 344
AluBI	AGCT	1 cut(s)	230
AluI	AGCT	1 cut(s)	230
Alw21I	GWGCWC	2 cut(s)	149, 232
Alw26I	GTCTC	1 cut(s)	44
Alw44I	GTGCAC	1 cut(s)	145
AlwI	GGATC	1 cut(s)	407
AoxI	GGCC	1 cut(s)	307
ApaLI	GTGCAC	1 cut(s)	145
ApoI	RAATTY	3 cut(s)	72, 301, 336
AsiGI	ACCGGT	1 cut(s)	78
AspA2I	CCTAGG	1 cut(s)	172
AsuC2I	CCSGG	2 cut(s)	86, 269
AsuHPI	GGTGA	2 cut(s)	145, 389
AvrII	CCTAGG	1 cut(s)	172
BaeGI	GKGCMC	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	2 cut(s)	149, 232
BccI	CCATC	2 cut(s)	317, 380
BcnI	CCSGG	2 cut(s)	86, 269
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	330
BlnI	CCTAGG	1 cut(s)	172
Bme1390I	CCNGG	2 cut(s)	86, 269
BmiI	GGNNCC	2 cut(s)	83, 178
BmrFI	CCNGG	2 cut(s)	86, 269
BpiI	GAAGAC	1 cut(s)	297
BpuMI	CCSGG	2 cut(s)	86, 269
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	172, 364
BsaWI	WCCGGW	3 cut(s)	78, 130, 141
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 267, 286
Bse118I	RCCGGY	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	172, 364
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	3 cut(s)	85, 267, 286
BseSI	GKGCMC	1 cut(s)	149
BshFI	GGCC	1 cut(s)	309
BshNI	GGYRCC	1 cut(s)	176
BshTI	ACCGGT	1 cut(s)	78
BsiHKAI	GWGCWC	2 cut(s)	149, 232
BsiSI	CCGG	5 cut(s)	79, 85, 131, 142, 268
BslI	CCNNNNNNNGG	3 cut(s)	85, 267, 286
BsmAI	GTCTC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	309
Bso31I	GGTCTC	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	149, 232
Bsp143I	GATC	1 cut(s)	399
BspACI	CCGC	2 cut(s)	64, 110
BspANI	GGCC	1 cut(s)	309
BspHI	TCATGA	1 cut(s)	402
BspLI	GGNNCC	2 cut(s)	83, 178
BspPI	GGATC	1 cut(s)	407
BspQI	GCTCTTC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	78
BssAI	RCCGGY	1 cut(s)	78
BssECI	CCNNGG	2 cut(s)	172, 364
BssMI	GATC	1 cut(s)	399
BssT1I	CCWWGG	2 cut(s)	172, 364
Bst4CI	ACNGT	1 cut(s)	38
Bst6I	CTCTTC	2 cut(s)	92, 110
BstEII	GGTNACC	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	328
BstKTI	GATC	1 cut(s)	402
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	399
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstNSI	RCATGY	1 cut(s)	169
BstPI	GGTNACC	1 cut(s)	105
BstSCI	CCNGG	2 cut(s)	84, 267
BstSFI	CTRYAG	1 cut(s)	330
BstSLI	GKGCMC	1 cut(s)	149
BstV2I	GAAGAC	1 cut(s)	297
BsuRI	GGCC	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	328
CciI	TCATGA	1 cut(s)	402
Cfr10I	RCCGGY	1 cut(s)	78
CseI	GACGC	2 cut(s)	40, 210
Csp6I	GTAC	3 cut(s)	156, 258, 327
CspAI	ACCGGT	1 cut(s)	78
CviAII	CATG	5 cut(s)	121, 166, 311, 347, 403
CviJI	RGCY	4 cut(s)	31, 138, 230, 309
CviKI_1	RGCY	4 cut(s)	31, 138, 230, 309
CviQI	GTAC	3 cut(s)	156, 258, 327
DpnI	GATC	1 cut(s)	401
DpnII	GATC	1 cut(s)	399
Eam1104I	CTCTTC	2 cut(s)	92, 110
EarI	CTCTTC	2 cut(s)	92, 110
EciI	GGCGGA	1 cut(s)	53
Ecl136II	GAGCTC	1 cut(s)	230
Eco130I	CCWWGG	2 cut(s)	172, 364
Eco24I	GRGCYC	1 cut(s)	232
Eco31I	GGTCTC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	134
Eco91I	GGTNACC	1 cut(s)	105
EcoICRI	GAGCTC	1 cut(s)	230
EcoO65I	GGTNACC	1 cut(s)	105
EcoRI	GAATTC	1 cut(s)	301
EcoT14I	CCWWGG	2 cut(s)	172, 364
EcoT38I	GRGCYC	1 cut(s)	232
ErhI	CCWWGG	2 cut(s)	172, 364
FaeI	CATG	5 cut(s)	124, 169, 314, 350, 406
FatI	CATG	5 cut(s)	120, 165, 310, 346, 402
FauNDI	CATATG	1 cut(s)	15
FblI	GTMKAC	1 cut(s)	24
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	232
FspBI	CTAG	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	5 cut(s)	79, 85, 131, 142, 268
HgaI	GACGC	2 cut(s)	40, 210
Hin1II	CATG	5 cut(s)	124, 169, 314, 350, 406
HincII	GTYRAC	2 cut(s)	25, 55
HindII	GTYRAC	2 cut(s)	25, 55
HinfI	GANTC	1 cut(s)	415
HpaII	CCGG	5 cut(s)	79, 85, 131, 142, 268
HphI	GGTGA	2 cut(s)	145, 389
Hpy166II	GTNNAC	3 cut(s)	25, 55, 147
Hpy188I	TCNGA	2 cut(s)	358, 414
Hpy188III	TCNNGA	2 cut(s)	280, 403
Hpy8I	GTNNAC	3 cut(s)	25, 55, 147
Hpy99I	CGWCG	1 cut(s)	204
HpyAV	CCTTC	2 cut(s)	83, 280
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	5 cut(s)	124, 169, 314, 350, 406
Kzo9I	GATC	1 cut(s)	399
LguI	GCTCTTC	1 cut(s)	110
LmnI	GCTCC	2 cut(s)	227, 235
LpnPI	CCDG	9 cut(s)	61, 92, 98, 144, 155, 281, 291, 293, 309
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	105
MalI	GATC	1 cut(s)	401
MboI	GATC	1 cut(s)	399
MboII	GAAGA	5 cut(s)	109, 127, 241, 302, 395
MfeI	CAATTG	1 cut(s)	253
MhlI	GDGCHC	2 cut(s)	149, 232
MluCI	AATT	7 cut(s)	72, 237, 253, 301, 336, 393, 420
MlyI	GAGTC	1 cut(s)	409
MnlI	CCTC	4 cut(s)	93, 149, 218, 313
MseI	TTAA	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	112
MspI	CCGG	5 cut(s)	79, 85, 131, 142, 268
MspR9I	CCNGG	2 cut(s)	86, 269
MunI	CAATTG	1 cut(s)	253
MwoI	GCNNNNNNNGC	1 cut(s)	144
NciI	CCSGG	2 cut(s)	86, 269
NdeI	CATATG	1 cut(s)	15
NdeII	GATC	1 cut(s)	399
NlaIII	CATG	5 cut(s)	124, 169, 314, 350, 406
NlaIV	GGNNCC	2 cut(s)	83, 178
NspI	RCATGY	1 cut(s)	169
PagI	TCATGA	1 cut(s)	402
PciSI	GCTCTTC	1 cut(s)	110
PfoI	TCCNGGA	1 cut(s)	84
PinAI	ACCGGT	1 cut(s)	78
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
Psp124BI	GAGCTC	1 cut(s)	232
PspEI	GGTNACC	1 cut(s)	105
PspN4I	GGNNCC	2 cut(s)	83, 178
RsaI	GTAC	3 cut(s)	157, 259, 328
RsaNI	GTAC	3 cut(s)	156, 258, 327
SacI	GAGCTC	1 cut(s)	232
SalI	GTCGAC	1 cut(s)	23
SapI	GCTCTTC	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	392
Sau3AI	GATC	1 cut(s)	399
SchI	GAGTC	1 cut(s)	409
ScrFI	CCNGG	2 cut(s)	86, 269
SduI	GDGCHC	2 cut(s)	149, 232
SetI	ASST	6 cut(s)	8, 60, 104, 191, 232, 366
SfcI	CTRYAG	1 cut(s)	330
Sse9I	AATT	7 cut(s)	72, 237, 253, 301, 336, 393, 420
SsiI	CCGC	2 cut(s)	64, 110
SspMI	CTAG	1 cut(s)	173
SstI	GAGCTC	1 cut(s)	232
StyD4I	CCNGG	2 cut(s)	84, 267
StyI	CCWWGG	2 cut(s)	172, 364
TaaI	ACNGT	1 cut(s)	38
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	1 cut(s)	24
TasI	AATT	7 cut(s)	72, 237, 253, 301, 336, 393, 420
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TspDTI	ATGAA	3 cut(s)	299, 396, 419
VneI	GTGCAC	1 cut(s)	145
XapI	RAATTY	3 cut(s)	72, 301, 336
XceI	RCATGY	1 cut(s)	169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XmaJI	CCTAGG	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	24
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.