Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008806.1

Orthogroup ID

OG0007557

Physical Location & Seq

Genomic Coordinates Forward (+)

29941 .. 33395

Gene Structure 3455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008806.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgtcgaagaggtttggtaatctgttgatcggcaagaactacggtctccctgtccgccgtagaatttatctgttccgcgaaggggagaggagcatgatacttccggtgagcatccgctgcaacacttgtgccaatcgcatgccccaaggcaccactttgaactatgtaagaagacgccccctctccaagacttctttgggagctccaatagttacatttttcttcaattgtaccaagtgccgggcactcatccggatgaaggaagacccggagaattcaggatatgttgttgaggatggtgctacagaagttcttgaacatgagaaatcagaacgccttggaaagattcgtgatgaagatggtttggatcctgaaacatctgactctaatttgaagaaatctgggcatcatcgaaggattcatgatgaagctggcttagattatgaaacatccgactctgatttgaagagacaaaagcttatgattgggcttcctagcaacccaacagagtcgttcactctttcggatggctcaagcacagagctagtctttccccatgtgggcaatgagaatttcgattgtgaattgctctcgagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF572

Protein Analysis

199

Amino Acids

22.58

Weight (kDa)

7.66

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007557)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0233381 RchiOBHm_Chr7g0233401
rosa_laevigata	RLG00000001273 RLG00000024849
rosa_multiflora	Rmu_sc0003624.1_g000022 Rmu_sc0006414.1_g000014 Rmu_sc0008806.1_g000008 Rmu_sc0017965.1_g000001 Rmu_sc0024703.1_g000004 Rmu_sc0036637.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417400
rosa_rugosa	Rorug03G0057600
rosa_samantha	Rh3BG119000 Rh3CG122400 Rh3DG121100 Rh4BG223600 Rh4DG220700 Rh7AG436200 Rh7CG455600 Rh7CG455900
rosa_wichuraiana	Rw3G009790 Rw4G019070 Rw7G035940 Rw7G035950 Rw7G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AccII	CGCG	1 cut(s)	78
AccIII	TCCGGA	1 cut(s)	252
AciI	CCGC	3 cut(s)	55, 76, 115
AclWI	GGATC	2 cut(s)	362, 375
AcsI	RAATTY	3 cut(s)	63, 274, 571
AcyI	GRCGYC	1 cut(s)	175
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	4 cut(s)	82, 240, 259, 560
AgsI	TTSAA	5 cut(s)	160, 226, 317, 394, 466
AluBI	AGCT	4 cut(s)	203, 431, 478, 544
AluI	AGCT	4 cut(s)	203, 431, 478, 544
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	2 cut(s)	50, 463
AlwI	GGATC	2 cut(s)	362, 375
Ama87I	CYCGRG	1 cut(s)	592
Aor13HI	TCCGGA	1 cut(s)	252
ApeKI	GCWGC	1 cut(s)	117
ApoI	RAATTY	3 cut(s)	63, 274, 571
AsuC2I	CCSGG	2 cut(s)	242, 269
AsuHPI	GGTGA	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	592
BaeGI	GKGCMC	1 cut(s)	247
BamHI	GGATCC	1 cut(s)	367
BanI	GGYRCC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	205
BbsI	GAAGAC	2 cut(s)	178, 270
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	3 cut(s)	290, 353, 521
BceAI	ACGGC	1 cut(s)	42
BcnI	CCSGG	2 cut(s)	242, 269
BcoDI	GTCTC	2 cut(s)	50, 463
BfaI	CTAG	2 cut(s)	495, 545
BfmI	CTRYAG	1 cut(s)	303
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
Bme1390I	CCNGG	2 cut(s)	242, 269
BmeT110I	CYCGRG	1 cut(s)	592
BmiI	GGNNCC	2 cut(s)	151, 369
BmrFI	CCNGG	2 cut(s)	242, 269
BmsI	GCATC	2 cut(s)	120, 415
BpiI	GAAGAC	2 cut(s)	178, 270
BpuEI	CTTGAG	1 cut(s)	517
BpuMI	CCSGG	2 cut(s)	242, 269
BsaHI	GRCGYC	1 cut(s)	175
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	145, 337
BsaWI	WCCGGW	2 cut(s)	103, 252
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 240, 259, 560
Bse3DI	GCAATG	1 cut(s)	571
BseAI	TCCGGA	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	145, 337
BseGI	GGATG	6 cut(s)	111, 249, 261, 301, 449, 532
BseLI	CCNNNNNNNGG	4 cut(s)	82, 240, 259, 560
BseMI	GCAATG	1 cut(s)	571
BseRI	GAGGAG	1 cut(s)	103
BseSI	GKGCMC	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	104
Bsh1236I	CGCG	1 cut(s)	78
BshNI	GGYRCC	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	592
BsiSI	CCGG	4 cut(s)	104, 241, 253, 269
BslI	CCNNNNNNNGG	4 cut(s)	82, 240, 259, 560
BsmAI	GTCTC	2 cut(s)	50, 463
Bso31I	GGTCTC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	592
Bsp1286I	GDGCHC	2 cut(s)	205, 247
Bsp13I	TCCGGA	1 cut(s)	252
Bsp143I	GATC	2 cut(s)	27, 367
BspACI	CCGC	3 cut(s)	55, 76, 115
BspEI	TCCGGA	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	78
BspHI	TCATGA	1 cut(s)	421
BspLI	GGNNCC	2 cut(s)	151, 369
BspPI	GGATC	2 cut(s)	362, 375
BspT107I	GGYRCC	1 cut(s)	149
BspTNI	GGTCTC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	571
BssECI	CCNNGG	2 cut(s)	145, 337
BssMI	GATC	2 cut(s)	27, 367
BssNI	GRCGYC	1 cut(s)	175
BssT1I	CCWWGG	2 cut(s)	145, 337
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	2 cut(s)	2, 461
BstACI	GRCGYC	1 cut(s)	175
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	140, 433
BstDEI	CTNAG	1 cut(s)	436
BstF5I	GGATG	6 cut(s)	111, 249, 261, 301, 449, 532
BstFNI	CGCG	1 cut(s)	78
BstKTI	GATC	2 cut(s)	30, 370
BstMAI	GTCTC	2 cut(s)	50, 463
BstMBI	GATC	2 cut(s)	27, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	2 cut(s)	240, 267
BstSFI	CTRYAG	1 cut(s)	303
BstSLI	GKGCMC	1 cut(s)	247
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	104
BstV2I	GAAGAC	2 cut(s)	178, 270
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BtsCI	GGATG	6 cut(s)	111, 249, 261, 301, 449, 532
Cac8I	GCNNGC	2 cut(s)	140, 433
CciI	TCATGA	1 cut(s)	421
CseI	GACGC	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	5 cut(s)	94, 139, 320, 422, 557
CviJI	RGCY	7 cut(s)	203, 431, 435, 478, 490, 531, 544
CviKI_1	RGCY	7 cut(s)	203, 431, 435, 478, 490, 531, 544
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	1 cut(s)	436
DpnI	GATC	2 cut(s)	29, 369
DpnII	GATC	2 cut(s)	27, 367
Eam1104I	CTCTTC	2 cut(s)	2, 461
EarI	CTCTTC	2 cut(s)	2, 461
EciI	GGCGGA	1 cut(s)	44
Ecl136II	GAGCTC	1 cut(s)	203
Eco130I	CCWWGG	2 cut(s)	145, 337
Eco24I	GRGCYC	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	592
EcoICRI	GAGCTC	1 cut(s)	203
EcoRI	GAATTC	1 cut(s)	274
EcoT14I	CCWWGG	2 cut(s)	145, 337
EcoT38I	GRGCYC	1 cut(s)	205
ErhI	CCWWGG	2 cut(s)	145, 337
FaeI	CATG	5 cut(s)	97, 142, 323, 425, 560
FaiI	YATR	9 cut(s)	95, 140, 165, 285, 321, 423, 444, 482, 558
FatI	CATG	5 cut(s)	93, 138, 319, 421, 556
Fnu4HI	GCNGC	1 cut(s)	118
FokI	GGATG	6 cut(s)	98, 236, 268, 308, 436, 539
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	1 cut(s)	118
FspBI	CTAG	2 cut(s)	495, 545
GluI	GCNGC	1 cut(s)	118
HapII	CCGG	4 cut(s)	104, 241, 253, 269
HgaI	GACGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	175
Hin1II	CATG	5 cut(s)	97, 142, 323, 425, 560
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	5 cut(s)	346, 383, 418, 455, 509
HpaII	CCGG	4 cut(s)	104, 241, 253, 269
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	516
Hpy188I	TCNGA	5 cut(s)	331, 382, 454, 460, 526
Hpy188III	TCNNGA	8 cut(s)	253, 279, 314, 350, 371, 422, 592, 594
Hpy8I	GTNNAC	1 cut(s)	516
HpyAV	CCTTC	3 cut(s)	74, 253, 408
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4V	TGCA	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpyF3I	CTNAG	1 cut(s)	436
Hsp92I	GRCGYC	1 cut(s)	175
Hsp92II	CATG	5 cut(s)	97, 142, 323, 425, 560
Kpn2I	TCCGGA	1 cut(s)	252
Kzo9I	GATC	2 cut(s)	27, 367
LmnI	GCTCC	3 cut(s)	90, 200, 208
LpnPI	CCDG	9 cut(s)	63, 117, 254, 264, 266, 282, 384, 387, 417
Lsp1109I	GCAGC	1 cut(s)	104
LweI	GCATC	2 cut(s)	120, 415
MaeI	CTAG	2 cut(s)	495, 545
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	2 cut(s)	29, 369
MboI	GATC	2 cut(s)	27, 367
MboII	GAAGA	7 cut(s)	19, 183, 214, 275, 368, 406, 478
MfeI	CAATTG	1 cut(s)	226
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	2 cut(s)	205, 247
MluCI	AATT	6 cut(s)	63, 226, 274, 388, 571, 584
MlyI	GAGTC	3 cut(s)	377, 449, 518
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	4 cut(s)	3, 81, 191, 286
MroI	TCCGGA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	4 cut(s)	104, 241, 253, 269
MspR9I	CCNGG	2 cut(s)	242, 269
MunI	CAATTG	1 cut(s)	226
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	117
NciI	CCSGG	2 cut(s)	242, 269
NdeII	GATC	2 cut(s)	27, 367
NlaIII	CATG	5 cut(s)	97, 142, 323, 425, 560
NlaIV	GGNNCC	2 cut(s)	151, 369
NspI	RCATGY	1 cut(s)	142
PaeI	GCATGC	1 cut(s)	142
PaeR7I	CTCGAG	1 cut(s)	592
PagI	TCATGA	1 cut(s)	421
PfeI	GAWTC	2 cut(s)	346, 418
PkrI	GCNGC	1 cut(s)	119
PleI	GAGTC	3 cut(s)	377, 449, 517
PpsI	GAGTC	3 cut(s)	377, 449, 517
Psp124BI	GAGCTC	1 cut(s)	205
PspN4I	GGNNCC	2 cut(s)	151, 369
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
RseI	CAYNNNNRTG	1 cut(s)	254
SacI	GAGCTC	1 cut(s)	205
SatI	GCNGC	1 cut(s)	118
Sau3AI	GATC	2 cut(s)	27, 367
SchI	GAGTC	3 cut(s)	377, 449, 518
ScrFI	CCNGG	2 cut(s)	242, 269
SduI	GDGCHC	2 cut(s)	205, 247
SetI	ASST	5 cut(s)	14, 205, 433, 480, 546
SfaNI	GCATC	2 cut(s)	120, 415
SfcI	CTRYAG	1 cut(s)	303
Sfr274I	CTCGAG	1 cut(s)	592
SlaI	CTCGAG	1 cut(s)	592
SmiMI	CAYNNNNRTG	1 cut(s)	254
SmlI	CTYRAG	2 cut(s)	532, 592
SmoI	CTYRAG	2 cut(s)	532, 592
SphI	GCATGC	1 cut(s)	142
Sse9I	AATT	6 cut(s)	63, 226, 274, 388, 571, 584
SsiI	CCGC	3 cut(s)	55, 76, 115
SspMI	CTAG	2 cut(s)	495, 545
SstI	GAGCTC	1 cut(s)	205
StyD4I	CCNGG	2 cut(s)	240, 267
StyI	CCWWGG	2 cut(s)	145, 337
TaaI	ACNGT	1 cut(s)	44
TaqI	TCGA	4 cut(s)	5, 412, 576, 593
TasI	AATT	6 cut(s)	63, 226, 274, 388, 571, 584
TfiI	GAWTC	2 cut(s)	346, 418
TseI	GCWGC	1 cut(s)	117
TspDTI	ATGAA	5 cut(s)	272, 369, 410, 441, 459
XapI	RAATTY	3 cut(s)	63, 274, 571
XceI	RCATGY	1 cut(s)	142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
XhoI	CTCGAG	1 cut(s)	592
XspI	CTAG	2 cut(s)	495, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.