Rw4G019070

Coiled-coil domain-containing protein 94 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0007557
Physical Location & Seq
Reverse (-)
42189544 .. 42198981
9438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G019070.1

Sequence Viewer

Length: 699 bp
ATGTCGAAGAGGTTTGGTAATCTGTTGATCGGCAAGACCTACGGTCTCACTGTCCGCCGTAGAATTTATCTGTTCCGCGAAGGAGAGAGGAGGTGGTTACCGCTGAAGACCATGATACTTCCGGTGAGCATCCGCTGCAACACTTGTGCCAATCGCATGCCCCAAGGCACCACTTTGAACTATGTAAGACGACGCCCCCTCTCCAAGACTTCTTTGGGAGCTCCAATAGTTACATTTTTCTTCAATTGTACCAAGTGCCGGGCACTCATCCAGATGAAGGAAGACCCAGAGAATTCAGGCCATGTTGTTGAGGATGGTGCTACAGAAGTTCTTGAACATGAGAAATCAGAACACCTTGGAAATATTCATGATGAAGATGGTTTGGATCATGAAACATCTGACTCTAATTTGAAGAAATCAGAACACCTTGGAAAGATTCGTGATGAAGATGGTTTGGATCCTGAAACATCTGACTCTAATTTGAAGAAATCTGGGCATCATCGAAAGATTCATGATGAAGCTGGCTTAGATTATGAAACATCCGACTCTGATTTGAAGAGACAAAAGCTTATGATTGGGCTTCCTAGCAACCCAACAGAGTCAAAAAAGAGTAGGAAAAAAAAAAGAGAAAAAAAAAAAATAGAGAAAAAAGAGTTAAAAAAAAAAGTAGGAATAAAAAAGAAAAAATTAAAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF572

Protein Analysis

232

Amino Acids

26.69

Weight (kDa)

9.74

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Saf4_Yju2 PF04502 38 - 225 4.8e-14 Saf4/Yju2 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AccII CGCG 1 cut(s) 78
AciI CCGC 4 cut(s) 55, 76, 101, 133
AclWI GGATC 3 cut(s) 393, 452, 465
AcsI RAATTY 2 cut(s) 63, 292
AcuI CTGAAG 1 cut(s) 125
AcyI GRCGYC 1 cut(s) 193
AfaI GTAC 1 cut(s) 250
AfiI CCNNNNNNNGG 2 cut(s) 258, 277
AgsI TTSAA 6 cut(s) 178, 244, 335, 412, 484, 556
AhdI GACNNNNNGTC 1 cut(s) 42
AluBI AGCT 3 cut(s) 221, 521, 568
AluI AGCT 3 cut(s) 221, 521, 568
Alw21I GWGCWC 1 cut(s) 223
Alw26I GTCTC 2 cut(s) 50, 553
AlwI GGATC 3 cut(s) 393, 452, 465
AoxI GGCC 1 cut(s) 298
ApeKI GCWGC 1 cut(s) 135
ApoI RAATTY 2 cut(s) 63, 292
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 136
BaeGI GKGCMC 1 cut(s) 265
BamHI GGATCC 1 cut(s) 457
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 223
BbsI GAAGAC 2 cut(s) 113, 288
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 122
BccI CCATC 3 cut(s) 308, 371, 443
BceAI ACGGC 1 cut(s) 42
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 2 cut(s) 50, 553
BfaI CTAG 1 cut(s) 585
BfmI CTRYAG 1 cut(s) 321
BisI GCNGC 1 cut(s) 136
BlsI GCNGC 1 cut(s) 137
Bme1390I CCNGG 1 cut(s) 260
BmeRI GACNNNNNGTC 1 cut(s) 42
BmiI GGNNCC 2 cut(s) 169, 459
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 2 cut(s) 138, 505
BpiI GAAGAC 2 cut(s) 113, 288
BpuMI CCSGG 1 cut(s) 260
BsaHI GRCGYC 1 cut(s) 193
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 3 cut(s) 163, 355, 427
BsaWI WCCGGW 1 cut(s) 121
Bsc4I CCNNNNNNNGG 2 cut(s) 258, 277
BseDI CCNNGG 3 cut(s) 163, 355, 427
BseGI GGATG 4 cut(s) 129, 267, 319, 539
BseLI CCNNNNNNNGG 2 cut(s) 258, 277
BseRI GAGGAG 1 cut(s) 103
BseSI GKGCMC 1 cut(s) 265
BseXI GCAGC 1 cut(s) 122
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 1 cut(s) 300
BshNI GGYRCC 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 223
BsiSI CCGG 2 cut(s) 122, 259
BslI CCNNNNNNNGG 2 cut(s) 258, 277
BsmAI GTCTC 2 cut(s) 50, 553
BsnI GGCC 1 cut(s) 300
Bso31I GGTCTC 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 223, 265
Bsp143I GATC 3 cut(s) 27, 385, 457
BspACI CCGC 4 cut(s) 55, 76, 101, 133
BspANI GGCC 1 cut(s) 300
BspFNI CGCG 1 cut(s) 78
BspHI TCATGA 3 cut(s) 367, 388, 511
BspLI GGNNCC 2 cut(s) 169, 459
BspPI GGATC 3 cut(s) 393, 452, 465
BspT107I GGYRCC 1 cut(s) 167
BspTNI GGTCTC 1 cut(s) 50
BssECI CCNNGG 3 cut(s) 163, 355, 427
BssMI GATC 3 cut(s) 27, 385, 457
BssNI GRCGYC 1 cut(s) 193
BssT1I CCWWGG 3 cut(s) 163, 355, 427
Bst4CI ACNGT 2 cut(s) 44, 52
Bst6I CTCTTC 2 cut(s) 2, 551
BstACI GRCGYC 1 cut(s) 193
BstAPI GCANNNNNTGC 1 cut(s) 135
BstC8I GCNNGC 2 cut(s) 158, 523
BstDEI CTNAG 1 cut(s) 526
BstEII GGTNACC 1 cut(s) 96
BstF5I GGATG 4 cut(s) 129, 267, 319, 539
BstFNI CGCG 1 cut(s) 78
BstKTI GATC 3 cut(s) 30, 388, 460
BstMAI GTCTC 2 cut(s) 50, 553
BstMBI GATC 3 cut(s) 27, 385, 457
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNSI RCATGY 1 cut(s) 160
BstPI GGTNACC 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 258
BstSFI CTRYAG 1 cut(s) 321
BstSLI GKGCMC 1 cut(s) 265
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 122
BstV2I GAAGAC 2 cut(s) 113, 288
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
BsuRI GGCC 1 cut(s) 300
BtsCI GGATG 4 cut(s) 129, 267, 319, 539
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 2 cut(s) 158, 523
CciI TCATGA 3 cut(s) 367, 388, 511
CseI GACGC 1 cut(s) 201
Csp6I GTAC 1 cut(s) 249
CviAII CATG 7 cut(s) 112, 157, 302, 338, 368, 389, 512
CviJI RGCY 6 cut(s) 221, 300, 521, 525, 568, 580
CviKI_1 RGCY 6 cut(s) 221, 300, 521, 525, 568, 580
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 1 cut(s) 526
DpnI GATC 3 cut(s) 29, 387, 459
DpnII GATC 3 cut(s) 27, 385, 457
DriI GACNNNNNGTC 1 cut(s) 42
Eam1104I CTCTTC 2 cut(s) 2, 551
Eam1105I GACNNNNNGTC 1 cut(s) 42
EarI CTCTTC 2 cut(s) 2, 551
EciI GGCGGA 1 cut(s) 44
Ecl136II GAGCTC 1 cut(s) 221
Eco130I CCWWGG 3 cut(s) 163, 355, 427
Eco24I GRGCYC 1 cut(s) 223
Eco31I GGTCTC 1 cut(s) 50
Eco53kI GAGCTC 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 125
Eco91I GGTNACC 1 cut(s) 96
EcoICRI GAGCTC 1 cut(s) 221
EcoO65I GGTNACC 1 cut(s) 96
EcoRI GAATTC 1 cut(s) 292
EcoT14I CCWWGG 3 cut(s) 163, 355, 427
EcoT38I GRGCYC 1 cut(s) 223
ErhI CCWWGG 3 cut(s) 163, 355, 427
FaeI CATG 7 cut(s) 115, 160, 305, 341, 371, 392, 515
FatI CATG 7 cut(s) 111, 156, 301, 337, 367, 388, 511
Fnu4HI GCNGC 1 cut(s) 136
FokI GGATG 4 cut(s) 116, 254, 326, 526
FriOI GRGCYC 1 cut(s) 223
Fsp4HI GCNGC 1 cut(s) 136
FspBI CTAG 1 cut(s) 585
GluI GCNGC 1 cut(s) 136
HaeIII GGCC 1 cut(s) 300
HapII CCGG 2 cut(s) 122, 259
HgaI GACGC 1 cut(s) 201
Hin1I GRCGYC 1 cut(s) 193
Hin1II CATG 7 cut(s) 115, 160, 305, 341, 371, 392, 515
HindIII AAGCTT 1 cut(s) 566
HinfI GANTC 6 cut(s) 401, 436, 473, 508, 545, 599
HpaII CCGG 2 cut(s) 122, 259
HphI GGTGA 1 cut(s) 136
Hpy188I TCNGA 6 cut(s) 349, 400, 421, 472, 544, 550
Hpy188III TCNNGA 7 cut(s) 271, 332, 368, 389, 440, 461, 512
Hpy99I CGWCG 1 cut(s) 195
HpyAV CCTTC 2 cut(s) 74, 271
HpyCH4III ACNGT 2 cut(s) 44, 52
HpyCH4V TGCA 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpyF3I CTNAG 1 cut(s) 526
Hsp92I GRCGYC 1 cut(s) 193
Hsp92II CATG 7 cut(s) 115, 160, 305, 341, 371, 392, 515
Kzo9I GATC 3 cut(s) 27, 385, 457
LmnI GCTCC 2 cut(s) 218, 226
LpnPI CCDG 8 cut(s) 135, 272, 282, 284, 300, 474, 477, 507
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 2 cut(s) 138, 505
MaeI CTAG 1 cut(s) 585
MaeIII GTNAC 2 cut(s) 96, 229
MalI GATC 3 cut(s) 29, 387, 459
MboI GATC 3 cut(s) 27, 385, 457
MboII GAAGA 9 cut(s) 19, 118, 232, 293, 386, 424, 458, 496, 568
MfeI CAATTG 1 cut(s) 244
MflI RGATCY 1 cut(s) 457
MhlI GDGCHC 2 cut(s) 223, 265
MluCI AATT 6 cut(s) 63, 244, 292, 406, 478, 686
MlyI GAGTC 4 cut(s) 395, 467, 539, 608
MmeI TCCRAC 1 cut(s) 567
MnlI CCTC 5 cut(s) 3, 81, 84, 209, 304
MseI TTAA 2 cut(s) 656, 689
MslI CAYNNNNRTG 1 cut(s) 272
MspA1I CMGCKG 2 cut(s) 103, 135
MspI CCGG 2 cut(s) 122, 259
MspR9I CCNGG 1 cut(s) 260
MunI CAATTG 1 cut(s) 244
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 135
NciI CCSGG 1 cut(s) 260
NdeII GATC 3 cut(s) 27, 385, 457
NlaIII CATG 7 cut(s) 115, 160, 305, 341, 371, 392, 515
NlaIV GGNNCC 2 cut(s) 169, 459
NspI RCATGY 1 cut(s) 160
PaeI GCATGC 1 cut(s) 160
PagI TCATGA 3 cut(s) 367, 388, 511
PfeI GAWTC 2 cut(s) 436, 508
PkrI GCNGC 1 cut(s) 137
PleI GAGTC 4 cut(s) 395, 467, 539, 607
PpsI GAGTC 4 cut(s) 395, 467, 539, 607
Psp124BI GAGCTC 1 cut(s) 223
PspEI GGTNACC 1 cut(s) 96
PspN4I GGNNCC 2 cut(s) 169, 459
PsuI RGATCY 1 cut(s) 457
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
RseI CAYNNNNRTG 1 cut(s) 272
SacI GAGCTC 1 cut(s) 223
SaqAI TTAA 2 cut(s) 656, 689
SatI GCNGC 1 cut(s) 136
Sau3AI GATC 3 cut(s) 27, 385, 457
SchI GAGTC 4 cut(s) 395, 467, 539, 608
ScrFI CCNGG 1 cut(s) 260
SduI GDGCHC 2 cut(s) 223, 265
SetI ASST 8 cut(s) 14, 41, 95, 223, 357, 429, 523, 570
SfaNI GCATC 2 cut(s) 138, 505
SfcI CTRYAG 1 cut(s) 321
SmiMI CAYNNNNRTG 1 cut(s) 272
SphI GCATGC 1 cut(s) 160
Sse9I AATT 6 cut(s) 63, 244, 292, 406, 478, 686
SsiI CCGC 4 cut(s) 55, 76, 101, 133
SspI AATATT 1 cut(s) 364
SspMI CTAG 1 cut(s) 585
SstI GAGCTC 1 cut(s) 223
StyD4I CCNGG 1 cut(s) 258
StyI CCWWGG 3 cut(s) 163, 355, 427
TaaI ACNGT 2 cut(s) 44, 52
TaqI TCGA 2 cut(s) 5, 502
TasI AATT 6 cut(s) 63, 244, 292, 406, 478, 686
TfiI GAWTC 2 cut(s) 436, 508
Tru1I TTAA 2 cut(s) 656, 689
Tru9I TTAA 2 cut(s) 656, 689
TscAI CASTG 1 cut(s) 55
TseI GCWGC 1 cut(s) 135
TspDTI ATGAA 8 cut(s) 290, 356, 387, 405, 459, 500, 531, 549
TspRI CASTG 1 cut(s) 55
XapI RAATTY 2 cut(s) 63, 292
XceI RCATGY 1 cut(s) 160
XcmI CCANNNNNNNNNTGG 1 cut(s) 211
XspI CTAG 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.