Rroxscaffold_6G00417380

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
39121791 .. 39123969
2179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00417380.1

Sequence Viewer

Length: 759 bp
ATGGAGAAAAACCAGAGTGATTCCCCTAACGCCGTTAAGAAGCCCATCCCGCCGTACGTCAAGGCCCTATCGGGCTCGCTGGGCGGGATTGTGGAGGCCTCGTGTCTCCAGCCCATTGACGTCATCAAGACGCGGCTGCAGCTGGACCGGACCGGGGGGTACAAGGGAATTATCCACTGCGGCACCACGGTTGCGCGCACGGAAGGCGTCCGGGCTTTGTGGAAAGGATTGACCCCGTTTGCGACGCATCTTACTTTGAAGTACGCGCTGAGGATGGGATCCAATGCCGTGCTTCAAGGGGCGTTTAAGGACGCCCAGACCGGGAAGGTCAGCAATCACGGCCGGTTCATTTCCGGGTTCGGTGCCGGAGTTCTCGAGGCTCTTGTTATTGTCACTCCTTTCGAGGTAGTGAAAATTAGACTGCAGCAACAGAGAGGATTGAGTCATGAACTTCTGAAGTATAAGGGTCCTGTACACTGTGCTCGTAGGATCATCCGGGAGGAAGGTCTTCGTGGGCTCTGGTCGGGGGCTTCTCCAACTGTTATGCGCAATGGGACAAACCAGGCAGCTATGTTTTCAGCCAAAAATGCTTTTGATGTTCTCCTGTGGAAGAAACATGAAGGAGATGGGAGAGTCCTGCTGCCATGGCAGTCTATGATATCAGGTTTCCTCGCAGGAACAGCAGGTCCCATTTGCACCGGTCCCTTTGATGTTGTCAAAACAAGGCTCATGGCTCAGGGCAGGGGGCTGGTGAGTTGA

Protein Analysis

252

Amino Acids

27.2

Weight (kDa)

10.13

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 16 - 102 6.4e-18 Mitochondrial carrier protein
Mito_carr PF00153 111 - 205 5.8e-21 Mitochondrial carrier protein
Mito_carr PF00153 215 - 248 1.3e-06 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012809)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 123
Acc16I TGCGCA 1 cut(s) 548
Acc36I ACCTGC 1 cut(s) 674
AccB1I GGYRCC 2 cut(s) 182, 362
AccII CGCG 3 cut(s) 133, 196, 266
AciI CCGC 4 cut(s) 50, 84, 133, 180
AclWI GGATC 3 cut(s) 273, 286, 497
AcoI YGGCCR 1 cut(s) 340
AcuI CTGAAG 1 cut(s) 476
AcyI GRCGYC 3 cut(s) 120, 207, 312
AfaI GTAC 4 cut(s) 56, 161, 263, 474
AfiI CCNNNNNNNGG 2 cut(s) 154, 321
AgeI ACCGGT 1 cut(s) 698
AgsI TTSAA 2 cut(s) 259, 296
AjnI CCWGG 1 cut(s) 561
AloI GAACNNNNNNTCC 2 cut(s) 670, 702
AluBI AGCT 2 cut(s) 142, 569
AluI AGCT 2 cut(s) 142, 569
Alw21I GWGCWC 1 cut(s) 484
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 3 cut(s) 273, 286, 497
Ama87I CYCGRG 1 cut(s) 374
AoxI GGCC 3 cut(s) 63, 96, 340
ApeKI GCWGC 5 cut(s) 136, 139, 424, 566, 640
AsiGI ACCGGT 1 cut(s) 698
Asp700I GAANNNNTTC 1 cut(s) 507
AspLEI GCGC 4 cut(s) 196, 198, 268, 549
AspS9I GGNCC 6 cut(s) 64, 145, 150, 467, 686, 701
AsuC2I CCSGG 5 cut(s) 154, 212, 322, 355, 497
AvaI CYCGRG 1 cut(s) 374
AvaII GGWCC 5 cut(s) 145, 150, 467, 686, 701
BamHI GGATCC 1 cut(s) 278
BanI GGYRCC 2 cut(s) 182, 362
BanII GRGCYC 2 cut(s) 77, 519
BauI CACGAG 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 500
Bbv12I GWGCWC 1 cut(s) 484
BbvCI CCTCAGC 1 cut(s) 269
BbvI GCAGC 5 cut(s) 123, 151, 436, 578, 627
BccI CCATC 3 cut(s) 53, 268, 620
BceAI ACGGC 4 cut(s) 17, 37, 272, 355
BciT130I CCWGG 1 cut(s) 563
BcnI CCSGG 5 cut(s) 154, 212, 322, 355, 497
BcoDI GTCTC 1 cut(s) 110
BfmI CTRYAG 2 cut(s) 137, 422
BfuAI ACCTGC 1 cut(s) 674
BisI GCNGC 7 cut(s) 134, 137, 140, 181, 425, 567, 641
BlsI GCNGC 7 cut(s) 135, 138, 141, 182, 426, 568, 642
Bme1390I CCNGG 6 cut(s) 154, 212, 322, 355, 497, 563
Bme18I GGWCC 5 cut(s) 145, 150, 467, 686, 701
BmeT110I CYCGRG 1 cut(s) 374
BmgT120I GGNCC 6 cut(s) 64, 145, 150, 467, 686, 701
BmiI GGNNCC 6 cut(s) 184, 280, 364, 468, 688, 703
BmrFI CCNGG 6 cut(s) 154, 212, 322, 355, 497, 563
BmsI GCATC 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 500
BpmI CTGGAG 1 cut(s) 92
Bpu10I CCTNAGC 2 cut(s) 269, 735
BpuMI CCSGG 5 cut(s) 154, 212, 322, 355, 497
BsaHI GRCGYC 3 cut(s) 120, 207, 312
BsaJI CCNNGG 3 cut(s) 153, 186, 644
BsaWI WCCGGW 2 cut(s) 147, 698
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 321
Bse118I RCCGGY 2 cut(s) 342, 698
Bse3DI GCAATG 1 cut(s) 556
BseBI CCWGG 1 cut(s) 563
BseDI CCNNGG 3 cut(s) 153, 186, 644
BseGI GGATG 3 cut(s) 45, 279, 492
BseLI CCNNNNNNNGG 2 cut(s) 154, 321
BseMI GCAATG 1 cut(s) 556
BseMII CTCAG 2 cut(s) 260, 749
BsePI GCGCGC 1 cut(s) 194
BseX3I CGGCCG 1 cut(s) 340
BseXI GCAGC 5 cut(s) 123, 151, 436, 578, 627
BseYI CCCAGC 1 cut(s) 79
Bsh1236I CGCG 3 cut(s) 133, 196, 266
Bsh1285I CGRYCG 1 cut(s) 343
BshFI GGCC 3 cut(s) 65, 98, 342
BshNI GGYRCC 2 cut(s) 182, 362
BshTI ACCGGT 1 cut(s) 698
BsiEI CGRYCG 1 cut(s) 343
BsiHKAI GWGCWC 1 cut(s) 484
BsiHKCI CYCGRG 1 cut(s) 374
BsiSI CCGG 9 cut(s) 148, 153, 211, 321, 343, 354, 366, 496, 699
BsiWI CGTACG 1 cut(s) 54
BslFI GGGAC 3 cut(s) 568, 672, 687
BslI CCNNNNNNNGG 2 cut(s) 154, 321
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 3 cut(s) 568, 672, 687
BsnI GGCC 3 cut(s) 65, 98, 342
BsoBI CYCGRG 1 cut(s) 374
Bsp1286I GDGCHC 3 cut(s) 77, 484, 519
Bsp1407I TGTACA 1 cut(s) 472
Bsp143I GATC 2 cut(s) 278, 489
Bsp19I CCATGG 1 cut(s) 644
BspACI CCGC 4 cut(s) 50, 84, 133, 180
BspANI GGCC 3 cut(s) 65, 98, 342
BspCNI CTCAG 2 cut(s) 261, 748
BspFNI CGCG 3 cut(s) 133, 196, 266
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 6 cut(s) 184, 280, 364, 468, 688, 703
BspMAI CTGCAG 2 cut(s) 141, 426
BspMI ACCTGC 1 cut(s) 674
BspPI GGATC 3 cut(s) 273, 286, 497
BspT107I GGYRCC 2 cut(s) 182, 362
BsrDI GCAATG 1 cut(s) 556
BsrFI RCCGGY 2 cut(s) 342, 698
BsrGI TGTACA 1 cut(s) 472
BssAI RCCGGY 2 cut(s) 342, 698
BssECI CCNNGG 3 cut(s) 153, 186, 644
BssHII GCGCGC 1 cut(s) 194
BssMI GATC 2 cut(s) 278, 489
BssNI GRCGYC 3 cut(s) 120, 207, 312
BssSI CACGAG 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 644
Bst2BI CACGAG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 563
Bst4CI ACNGT 3 cut(s) 190, 479, 541
BstACI GRCGYC 3 cut(s) 120, 207, 312
BstAUI TGTACA 1 cut(s) 472
BstC8I GCNNGC 2 cut(s) 77, 196
BstDEI CTNAG 2 cut(s) 269, 735
BstDSI CCRYGG 2 cut(s) 186, 644
BstF5I GGATG 3 cut(s) 45, 279, 492
BstFNI CGCG 3 cut(s) 133, 196, 266
BstHHI GCGC 4 cut(s) 196, 198, 268, 549
BstKTI GATC 2 cut(s) 281, 492
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 2 cut(s) 278, 489
BstMCI CGRYCG 1 cut(s) 343
BstMWI GCNNNNNNNGC 8 cut(s) 49, 81, 139, 204, 339, 587, 646, 680
BstNI CCWGG 1 cut(s) 563
BstSCI CCNGG 6 cut(s) 152, 210, 320, 353, 495, 561
BstSFI CTRYAG 2 cut(s) 137, 422
BstUI CGCG 3 cut(s) 133, 196, 266
BstV1I GCAGC 5 cut(s) 123, 151, 436, 578, 627
BstV2I GAAGAC 1 cut(s) 500
BstX2I RGATCY 1 cut(s) 278
BstYI RGATCY 1 cut(s) 278
BstZI CGGCCG 1 cut(s) 340
BsuRI GGCC 3 cut(s) 65, 98, 342
BtgI CCRYGG 2 cut(s) 186, 644
BtsCI GGATG 3 cut(s) 45, 279, 492
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 2 cut(s) 175, 475
BveI ACCTGC 1 cut(s) 674
Cac8I GCNNGC 2 cut(s) 77, 196
CciI TCATGA 1 cut(s) 445
CfoI GCGC 4 cut(s) 196, 198, 268, 549
Cfr10I RCCGGY 2 cut(s) 342, 698
Cfr13I GGNCC 6 cut(s) 64, 145, 150, 467, 686, 701
CpoI CGGWCCG 1 cut(s) 150
CseI GACGC 4 cut(s) 139, 196, 253, 320
Csp6I GTAC 4 cut(s) 55, 160, 262, 473
CspAI ACCGGT 1 cut(s) 698
CspI CGGWCCG 1 cut(s) 150
CviAII CATG 4 cut(s) 446, 617, 645, 730
CviQI GTAC 4 cut(s) 55, 160, 262, 473
DdeI CTNAG 2 cut(s) 269, 735
DpnI GATC 2 cut(s) 280, 491
DpnII GATC 2 cut(s) 278, 489
EaeI YGGCCR 1 cut(s) 340
EagI CGGCCG 1 cut(s) 340
EclXI CGGCCG 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 644
Eco147I AGGCCT 1 cut(s) 98
Eco24I GRGCYC 2 cut(s) 77, 519
Eco32I GATATC 1 cut(s) 660
Eco47I GGWCC 5 cut(s) 145, 150, 467, 686, 701
Eco52I CGGCCG 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 476
Eco88I CYCGRG 1 cut(s) 374
EcoO109I RGGNCCY 3 cut(s) 64, 467, 686
EcoRII CCWGG 1 cut(s) 561
EcoRV GATATC 1 cut(s) 660
EcoT14I CCWWGG 1 cut(s) 644
EcoT38I GRGCYC 2 cut(s) 77, 519
ErhI CCWWGG 1 cut(s) 644
FaeI CATG 4 cut(s) 449, 620, 648, 733
FaiI YATR 8 cut(s) 447, 462, 545, 572, 618, 646, 656, 731
FaqI GGGAC 3 cut(s) 568, 672, 687
FatI CATG 4 cut(s) 445, 616, 644, 729
FauI CCCGC 2 cut(s) 57, 77
Fnu4HI GCNGC 7 cut(s) 134, 137, 140, 181, 425, 567, 641
FokI GGATG 3 cut(s) 32, 286, 479
FriOI GRGCYC 2 cut(s) 77, 519
Fsp4HI GCNGC 7 cut(s) 134, 137, 140, 181, 425, 567, 641
FspI TGCGCA 1 cut(s) 548
GlaI GCGC 4 cut(s) 195, 197, 267, 548
GluI GCNGC 7 cut(s) 134, 137, 140, 181, 425, 567, 641
GsaI CCCAGC 1 cut(s) 83
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 3 cut(s) 65, 98, 342
HapII CCGG 9 cut(s) 148, 153, 211, 321, 343, 354, 366, 496, 699
HgaI GACGC 4 cut(s) 139, 196, 253, 320
HhaI GCGC 4 cut(s) 196, 198, 268, 549
Hin1I GRCGYC 3 cut(s) 120, 207, 312
Hin1II CATG 4 cut(s) 449, 620, 648, 733
Hin6I GCGC 4 cut(s) 194, 196, 266, 547
HinP1I GCGC 4 cut(s) 194, 196, 266, 547
HinfI GANTC 3 cut(s) 20, 442, 633
HpaII CCGG 9 cut(s) 148, 153, 211, 321, 343, 354, 366, 496, 699
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 1 cut(s) 456
Hpy188III TCNNGA 3 cut(s) 127, 374, 446
Hpy8I GTNNAC 1 cut(s) 475
Hpy99I CGWCG 1 cut(s) 247
HpyAV CCTTC 4 cut(s) 197, 319, 497, 614
HpyCH4III ACNGT 3 cut(s) 190, 479, 541
HpyCH4IV ACGT 2 cut(s) 57, 120
HpyCH4V TGCA 3 cut(s) 139, 424, 696
HpyF10VI GCNNNNNNNGC 8 cut(s) 49, 81, 139, 204, 339, 587, 646, 680
HpyF3I CTNAG 2 cut(s) 269, 735
HpySE526I ACGT 2 cut(s) 57, 120
Hsp92I GRCGYC 3 cut(s) 120, 207, 312
Hsp92II CATG 4 cut(s) 449, 620, 648, 733
HspAI GCGC 4 cut(s) 194, 196, 266, 547
Kzo9I GATC 2 cut(s) 278, 489
Lsp1109I GCAGC 5 cut(s) 123, 151, 436, 578, 627
LweI GCATC 1 cut(s) 256
MaeII ACGT 2 cut(s) 57, 120
MaeIII GTNAC 1 cut(s) 391
MalI GATC 2 cut(s) 280, 491
MboI GATC 2 cut(s) 278, 489
MboII GAAGA 2 cut(s) 500, 622
MflI RGATCY 1 cut(s) 278
MhlI GDGCHC 3 cut(s) 77, 484, 519
MluCI AATT 2 cut(s) 168, 414
MlyI GAGTC 2 cut(s) 451, 642
MmeI TCCRAC 1 cut(s) 560
MnlI CCTC 8 cut(s) 88, 109, 264, 370, 397, 428, 493, 680
MroXI GAANNNNTTC 1 cut(s) 507
MseI TTAA 2 cut(s) 36, 306
MspA1I CMGCKG 1 cut(s) 142
MspI CCGG 9 cut(s) 148, 153, 211, 321, 343, 354, 366, 496, 699
MspR9I CCNGG 6 cut(s) 154, 212, 322, 355, 497, 563
MvaI CCWGG 1 cut(s) 563
MvnI CGCG 3 cut(s) 133, 196, 266
MwoI GCNNNNNNNGC 8 cut(s) 49, 81, 139, 204, 339, 587, 646, 680
NciI CCSGG 5 cut(s) 154, 212, 322, 355, 497
NcoI CCATGG 1 cut(s) 644
NdeII GATC 2 cut(s) 278, 489
NlaIII CATG 4 cut(s) 449, 620, 648, 733
NlaIV GGNNCC 6 cut(s) 184, 280, 364, 468, 688, 703
NmuCI GTSAC 1 cut(s) 391
NsbI TGCGCA 1 cut(s) 548
PaeR7I CTCGAG 1 cut(s) 374
PagI TCATGA 1 cut(s) 445
PauI GCGCGC 1 cut(s) 194
PceI AGGCCT 1 cut(s) 98
PdmI GAANNNNTTC 1 cut(s) 507
PfeI GAWTC 1 cut(s) 20
Pfl23II CGTACG 1 cut(s) 54
PfoI TCCNGGA 1 cut(s) 495
PinAI ACCGGT 1 cut(s) 698
PkrI GCNGC 7 cut(s) 135, 138, 141, 182, 426, 568, 642
PleI GAGTC 2 cut(s) 450, 641
PpsI GAGTC 2 cut(s) 450, 641
PpuMI RGGWCCY 2 cut(s) 467, 686
Psp5II RGGWCCY 2 cut(s) 467, 686
Psp6I CCWGG 1 cut(s) 561
PspFI CCCAGC 1 cut(s) 79
PspGI CCWGG 1 cut(s) 561
PspLI CGTACG 1 cut(s) 54
PspN4I GGNNCC 6 cut(s) 184, 280, 364, 468, 688, 703
PspPI GGNCC 6 cut(s) 64, 145, 150, 467, 686, 701
PspPPI RGGWCCY 2 cut(s) 467, 686
PstI CTGCAG 2 cut(s) 141, 426
PsuI RGATCY 1 cut(s) 278
PteI GCGCGC 1 cut(s) 194
PvuII CAGCTG 1 cut(s) 142
RsaI GTAC 4 cut(s) 56, 161, 263, 474
RsaNI GTAC 4 cut(s) 55, 160, 262, 473
Rsr2I CGGWCCG 1 cut(s) 150
RsrII CGGWCCG 1 cut(s) 150
SaqAI TTAA 2 cut(s) 36, 306
SatI GCNGC 7 cut(s) 134, 137, 140, 181, 425, 567, 641
Sau3AI GATC 2 cut(s) 278, 489
Sau96I GGNCC 6 cut(s) 64, 145, 150, 467, 686, 701
SchI GAGTC 2 cut(s) 451, 642
ScrFI CCNGG 6 cut(s) 154, 212, 322, 355, 497, 563
SduI GDGCHC 3 cut(s) 77, 484, 519
SetI ASST 9 cut(s) 60, 123, 144, 330, 408, 508, 571, 667, 688
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 2 cut(s) 137, 422
Sfr274I CTCGAG 1 cut(s) 374
SinI GGWCC 5 cut(s) 145, 150, 467, 686, 701
SlaI CTCGAG 1 cut(s) 374
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 2 cut(s) 168, 414
SseBI AGGCCT 1 cut(s) 98
SsiI CCGC 4 cut(s) 50, 84, 133, 180
StuI AGGCCT 1 cut(s) 98
StyD4I CCNGG 6 cut(s) 152, 210, 320, 353, 495, 561
StyI CCWWGG 1 cut(s) 644
TaaI ACNGT 3 cut(s) 190, 479, 541
TaiI ACGT 2 cut(s) 60, 123
TaqI TCGA 2 cut(s) 375, 402
TasI AATT 2 cut(s) 168, 414
TatI WGTACW 1 cut(s) 472
TauI GCSGC 2 cut(s) 136, 183
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 2 cut(s) 36, 306
Tru9I TTAA 2 cut(s) 36, 306
TscAI CASTG 2 cut(s) 182, 482
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 5 cut(s) 136, 139, 424, 566, 640
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 3 cut(s) 337, 462, 633
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 2 cut(s) 182, 482
VpaK11BI GGWCC 5 cut(s) 145, 150, 467, 686, 701
XhoI CTCGAG 1 cut(s) 374
XmnI GAANNNNTTC 1 cut(s) 507
ZraI GACGTC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.