AT5G02030

domain associated with HOX domains

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
395567 .. 399125
3559 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02030.1

Sequence Viewer

Length: 1728 bp
ATGGCTGATGCATACGAGCCTTATCATGTTCTTCAACAAAGCCGGCGAGACAAACTTCGTATTCCATCTCTCGATTCCCACTTCCACTTTCACCCTCCTCCTCCTCCTTCCTCCGGCGGCGGAGGTGGCGTCTTTCCTCTCGCTGATTCCGATTTCCTCGCAGCCGGTGGCTTTCACTCCAACAACAACAACAACCACATATCTAACCCTAGCTACAGTAATTTCATGGGATTTCTCGGTGGCCCTTCTTCTTCTTCATCCACCGCAGTCGCCGTCGCCGGAGATCATTCCTTTAACGCCGGACTTTCTTCCGGAGACGTTCTTGTCTTCAAACCCGAGCCTCTATCTCTATCTTTGTCCTCTCACCCTAGACTCGCTTACGATCTAGTCGTTCCCGGTGTTGTTAACTCCGGATTCTGTAGATCTGCCGGTGAAGCCAACGCCGCCGCCGTCACCATCGCGTCTAGAAGCTCTGGTCCTCTCGGACCTTTCACGGGCTACGCGTCGATTCTTAAAGGATCAAGGTTCTTGAAACCAGCACAGATGCTTCTTGATGAGTTTTGTAATGTGGGTCGTGGGATTTACACCGACAAAGTCATCGACGACGATGATTCTTCTCTGCTTTTTGATCCGACGGTTGAGAATCTCTGCGGTGTTTCTGATGGCGGCGGAGGAGATAATGGAAAGAAAAAATCAAAACTCATCTCCATGCTCGACGAGGTTTACAAGAGGTATAAGCAATACTATGAGCAGCTACAAGCTGTGATGGGATCATTCGAATGCGTTGCAGGTCTCGGGCACGCTGCTCCGTACGCTAACTTAGCCTTGAAAGCATTGTCTAAGCATTTCAAGTGTTTGAAGAATGCTATAACGGACCAGCTTCAATTCAGCCACAACAACAAGATCCAACAACAACAACAATGTGGTCATCCGATGAACTCTGAGAATAAGACTGATTCTTTAAGATTTGGAGGAAGTGATAGTTCTAGAGGCTTATGTTCTGCTGGTCAAAGACATGGATTTCCTGATCATCATGCTCCTGTTTGGAGACCGCACCGTGGCCTACCCGAACGTGCTGTTACTGTTCTAAGGGCTTGGCTCTTCGATCATTTCTTGCATCCTTATCCAACAGATACAGACAAACTCATGCTGGCTAAGCAGACAGGTCTCTCCAGAAATCAGGTATCGAATTGGTTCATAAACGCAAGAGTTAGGGTTTGGAAGCCGATGGTGGAAGAGATTCACATGCTGGAGACTCGACAATCTCAGAGATCTTCTTCTTCCTCTTGGAGAGACGAACGTACTAGCACCACCGTCTTCCCTGACAACAGCAACAACAACCCATCTTCGTCCTCGGCACAGCAAAGACCTAACAACTCATCTCCGCCTAGACGGGCACGAAACGACGACGTTCATGGCACAAACAACAACAACAGCTATGTAAACAGTGGGAGCGGCGGCGGTAGTGCGGTTGGTTTCTCGTATGGAATTGGGTCGTCGAATGTGCCGGTGATGAATAGCAGCACAAACGGAGGAGTGTCTTTGACGTTAGGGCTTCATCATCAGATTGGGTTACCGGAGCCTTTTCCGATGACAACTGCTCAGAGGTTTGGGCTTGATGGTGGTAGTGGCGATGGTGGTGGTGGGTATGAAGGGCAAAATCGTCAGTTTGGGAGAGATTTTATTGGTGGTAGTAATCATCAGTTTCTACATGATTTTGTAGGTTGA

Protein Analysis

575

Amino Acids

62.01

Weight (kDa)

7.75

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
POX PF07526 170 - 291 8.1e-35 Associated with HOX
Homeobox_KN PF05920 366 - 405 1.1e-19 Homeobox KN domain
Homeodomain PF00046 373 - 405 1.9e-06 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 323
Acc36I ACCTGC 1 cut(s) 779
AccBSI CCGCTC 1 cut(s) 1455
AccII CGCG 2 cut(s) 461, 503
AccIII TCCGGA 2 cut(s) 311, 410
AclWI GGATC 4 cut(s) 526, 623, 778, 898
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 2 cut(s) 812, 1303
AfiI CCNNNNNNNGG 3 cut(s) 113, 494, 1058
AflIII ACRYGT 1 cut(s) 501
AgsI TTSAA 7 cut(s) 35, 331, 532, 829, 850, 859, 884
AluBI AGCT 6 cut(s) 213, 471, 754, 761, 880, 1437
AluI AGCT 6 cut(s) 213, 471, 754, 761, 880, 1437
Alw26I GTCTC 7 cut(s) 42, 309, 797, 1042, 1172, 1247, 1287
AlwI GGATC 4 cut(s) 526, 623, 778, 898
Ama87I CYCGRG 2 cut(s) 335, 794
Aor13HI TCCGGA 2 cut(s) 311, 410
AoxI GGCC 2 cut(s) 241, 1060
ApeKI GCWGC 4 cut(s) 161, 751, 803, 1521
Asp700I GAANNNNTTC 2 cut(s) 1193, 1239
AspS9I GGNCC 4 cut(s) 242, 476, 485, 874
AsuC2I CCSGG 1 cut(s) 396
AsuHPI GGTGA 5 cut(s) 83, 356, 443, 445, 1522
AsuII TTCGAA 1 cut(s) 777
AvaI CYCGRG 2 cut(s) 335, 794
AvaII GGWCC 3 cut(s) 476, 485, 874
BaeGI GKGCMC 2 cut(s) 801, 1399
BbsI GAAGAC 2 cut(s) 319, 1309
BbvI GCAGC 4 cut(s) 173, 763, 790, 1533
BccI CCATC 8 cut(s) 73, 464, 656, 760, 1222, 1351, 1613, 1628
BceAI ACGGC 2 cut(s) 257, 434
BcgI CGANNNNNNTGC 2 cut(s) 767, 801
BclI TGATCA 1 cut(s) 1027
BcnI CCSGG 1 cut(s) 396
BcoDI GTCTC 7 cut(s) 42, 309, 797, 1042, 1172, 1247, 1287
BfaI CTAG 7 cut(s) 210, 369, 386, 465, 987, 1305, 1389
BfmI CTRYAG 2 cut(s) 214, 418
BfuAI ACCTGC 1 cut(s) 779
BglII AGATCT 2 cut(s) 422, 1271
BlpI GCTNAGC 1 cut(s) 1155
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 3 cut(s) 476, 485, 874
BmeT110I CYCGRG 2 cut(s) 335, 794
BmgT120I GGNCC 4 cut(s) 242, 476, 485, 874
BmiI GGNNCC 1 cut(s) 1581
BmrFI CCNGG 1 cut(s) 396
BmsI GCATC 2 cut(s) 534, 1126
BpiI GAAGAC 2 cut(s) 319, 1309
BpmI CTGGAG 2 cut(s) 1156, 1271
Bpu1102I GCTNAGC 1 cut(s) 1155
Bpu14I TTCGAA 1 cut(s) 777
BpuMI CCSGG 1 cut(s) 396
BsaHI GRCGYC 1 cut(s) 129
BsaI GGTCTC 3 cut(s) 797, 1042, 1172
BsaJI CCNNGG 2 cut(s) 1057, 1353
BsaWI WCCGGW 3 cut(s) 311, 410, 1576
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 3 cut(s) 113, 494, 1058
Bse118I RCCGGY 4 cut(s) 42, 164, 428, 1507
BseAI TCCGGA 2 cut(s) 311, 410
BseDI CCNNGG 2 cut(s) 1057, 1353
BseGI GGATG 3 cut(s) 257, 928, 1117
BseLI CCNNNNNNNGG 3 cut(s) 113, 494, 1058
BseMII CTCAG 3 cut(s) 933, 1280, 1616
BseRI GAGGAG 5 cut(s) 87, 90, 93, 687, 1548
BseSI GKGCMC 2 cut(s) 801, 1399
BseXI GCAGC 4 cut(s) 173, 763, 790, 1533
Bsh1236I CGCG 2 cut(s) 461, 503
BshFI GGCC 2 cut(s) 243, 1062
BsiHKCI CYCGRG 2 cut(s) 335, 794
BsiWI CGTACG 1 cut(s) 810
BslI CCNNNNNNNGG 3 cut(s) 113, 494, 1058
BsmAI GTCTC 7 cut(s) 42, 309, 797, 1042, 1172, 1247, 1287
BsmBI CGTCTC 2 cut(s) 309, 1287
BsmI GAATGC 2 cut(s) 785, 868
BsnI GGCC 2 cut(s) 243, 1062
Bso31I GGTCTC 3 cut(s) 797, 1042, 1172
BsoBI CYCGRG 2 cut(s) 335, 794
Bsp119I TTCGAA 1 cut(s) 777
Bsp1286I GDGCHC 2 cut(s) 801, 1399
Bsp13I TCCGGA 2 cut(s) 311, 410
Bsp1720I GCTNAGC 1 cut(s) 1155
BspANI GGCC 2 cut(s) 243, 1062
BspCNI CTCAG 3 cut(s) 934, 1279, 1615
BspEI TCCGGA 2 cut(s) 311, 410
BspFNI CGCG 2 cut(s) 461, 503
BspLI GGNNCC 1 cut(s) 1581
BspMI ACCTGC 1 cut(s) 779
BspPI GGATC 4 cut(s) 526, 623, 778, 898
BspQI GCTCTTC 1 cut(s) 1106
BspT104I TTCGAA 1 cut(s) 777
BspTNI GGTCTC 3 cut(s) 797, 1042, 1172
BsrBI CCGCTC 1 cut(s) 1455
BsrFI RCCGGY 4 cut(s) 42, 164, 428, 1507
BssAI RCCGGY 4 cut(s) 42, 164, 428, 1507
BssECI CCNNGG 2 cut(s) 1057, 1353
BssNI GRCGYC 1 cut(s) 129
Bst4CI ACNGT 6 cut(s) 218, 637, 1058, 1084, 1315, 1448
Bst6I CTCTTC 2 cut(s) 1106, 1230
BstACI GRCGYC 1 cut(s) 129
BstBI TTCGAA 1 cut(s) 777
BstC8I GCNNGC 3 cut(s) 44, 801, 1152
BstDEI CTNAG 7 cut(s) 820, 840, 942, 1088, 1155, 1266, 1602
BstDSI CCRYGG 1 cut(s) 1057
BstEII GGTNACC 1 cut(s) 1572
BstF5I GGATG 3 cut(s) 257, 928, 1117
BstFNI CGCG 2 cut(s) 461, 503
BstMAI GTCTC 7 cut(s) 42, 309, 797, 1042, 1172, 1247, 1287
BstMWI GCNNNNNNNGC 7 cut(s) 126, 434, 443, 812, 821, 830, 1156
BstNSI RCATGY 1 cut(s) 1249
BstPI GGTNACC 1 cut(s) 1572
BstSCI CCNGG 1 cut(s) 394
BstSFI CTRYAG 2 cut(s) 214, 418
BstSLI GKGCMC 2 cut(s) 801, 1399
BstUI CGCG 2 cut(s) 461, 503
BstV1I GCAGC 4 cut(s) 173, 763, 790, 1533
BstV2I GAAGAC 2 cut(s) 319, 1309
BstX2I RGATCY 3 cut(s) 422, 903, 1271
BstYI RGATCY 3 cut(s) 422, 903, 1271
BsuRI GGCC 2 cut(s) 243, 1062
BtgI CCRYGG 1 cut(s) 1057
BtgZI GCGATG 2 cut(s) 442, 1647
BtsCI GGATG 3 cut(s) 257, 928, 1117
BtsIMutI CAGTG 1 cut(s) 1453
BveI ACCTGC 1 cut(s) 779
Cac8I GCNNGC 3 cut(s) 44, 801, 1152
Cfr10I RCCGGY 4 cut(s) 42, 164, 428, 1507
Cfr13I GGNCC 4 cut(s) 242, 476, 485, 874
CseI GACGC 3 cut(s) 118, 450, 492
Csp6I GTAC 2 cut(s) 811, 1302
CviAII CATG 9 cut(s) 26, 226, 709, 1016, 1034, 1147, 1246, 1415, 1712
CviQI GTAC 2 cut(s) 811, 1302
DdeI CTNAG 7 cut(s) 820, 840, 942, 1088, 1155, 1266, 1602
DrdI GACNNNNNNGTC 1 cut(s) 323
DseDI GACNNNNNNGTC 1 cut(s) 323
Eam1104I CTCTTC 2 cut(s) 1106, 1230
EarI CTCTTC 2 cut(s) 1106, 1230
EciI GGCGGA 3 cut(s) 135, 684, 1374
Eco31I GGTCTC 3 cut(s) 797, 1042, 1172
Eco47I GGWCC 3 cut(s) 476, 485, 874
Eco88I CYCGRG 2 cut(s) 335, 794
Eco91I GGTNACC 1 cut(s) 1572
EcoO65I GGTNACC 1 cut(s) 1572
EcoT22I ATGCAT 1 cut(s) 13
Esp3I CGTCTC 2 cut(s) 309, 1287
FaeI CATG 9 cut(s) 29, 229, 712, 1019, 1037, 1150, 1249, 1418, 1715
FatI CATG 9 cut(s) 25, 225, 708, 1015, 1033, 1146, 1245, 1414, 1711
FbaI TGATCA 1 cut(s) 1027
FokI GGATG 3 cut(s) 244, 915, 1104
FspBI CTAG 7 cut(s) 210, 369, 386, 465, 987, 1305, 1389
GsuI CTGGAG 2 cut(s) 1156, 1271
HaeIII GGCC 2 cut(s) 243, 1062
HgaI GACGC 3 cut(s) 118, 450, 492
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 9 cut(s) 29, 229, 712, 1019, 1037, 1150, 1249, 1418, 1715
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HpaI GTTAAC 1 cut(s) 406
HphI GGTGA 5 cut(s) 83, 356, 443, 445, 1522
Hpy166II GTNNAC 3 cut(s) 406, 724, 1444
Hpy188III TCNNGA 9 cut(s) 71, 312, 411, 465, 529, 551, 987, 1025, 1173
Hpy8I GTNNAC 3 cut(s) 406, 724, 1444
Hpy99I CGWCG 9 cut(s) 278, 508, 605, 608, 637, 719, 1409, 1412, 1501
HpyAV CCTTC 3 cut(s) 117, 255, 1646
HpyCH4III ACNGT 6 cut(s) 218, 637, 1058, 1084, 1315, 1448
HpyCH4IV ACGT 5 cut(s) 318, 1072, 1300, 1410, 1547
HpyCH4V TGCA 3 cut(s) 11, 788, 1117
HpyF10VI GCNNNNNNNGC 7 cut(s) 126, 434, 443, 812, 821, 830, 1156
HpyF3I CTNAG 7 cut(s) 820, 840, 942, 1088, 1155, 1266, 1602
HpySE526I ACGT 5 cut(s) 318, 1072, 1300, 1410, 1547
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 9 cut(s) 29, 229, 712, 1019, 1037, 1150, 1249, 1418, 1715
Kpn2I TCCGGA 2 cut(s) 311, 410
KroI GCCGGC 1 cut(s) 42
KroNI GCCGGC 1 cut(s) 44
Ksp22I TGATCA 1 cut(s) 1027
KspAI GTTAAC 1 cut(s) 406
LguI GCTCTTC 1 cut(s) 1106
LmnI GCTCC 4 cut(s) 811, 1042, 1452, 1579
Lsp1109I GCAGC 4 cut(s) 173, 763, 790, 1533
LweI GCATC 2 cut(s) 534, 1126
MaeI CTAG 7 cut(s) 210, 369, 386, 465, 987, 1305, 1389
MaeII ACGT 5 cut(s) 318, 1072, 1300, 1410, 1547
MaeIII GTNAC 3 cut(s) 451, 1078, 1572
MbiI CCGCTC 1 cut(s) 1455
MflI RGATCY 3 cut(s) 422, 903, 1271
MhlI GDGCHC 2 cut(s) 801, 1399
MluCI AATT 4 cut(s) 220, 884, 1189, 1488
MluI ACGCGT 1 cut(s) 501
MlyI GAGTC 2 cut(s) 366, 1249
MmeI TCCRAC 4 cut(s) 204, 656, 931, 1151
Mph1103I ATGCAT 1 cut(s) 13
MroI TCCGGA 2 cut(s) 311, 410
MroNI GCCGGC 1 cut(s) 42
MroXI GAANNNNTTC 2 cut(s) 1193, 1239
MseI TTAA 4 cut(s) 294, 405, 513, 962
MslI CAYNNNNRTG 2 cut(s) 707, 778
MspR9I CCNGG 1 cut(s) 396
Mva1269I GAATGC 2 cut(s) 785, 868
MvnI CGCG 2 cut(s) 461, 503
MwoI GCNNNNNNNGC 7 cut(s) 126, 434, 443, 812, 821, 830, 1156
NaeI GCCGGC 1 cut(s) 44
NciI CCSGG 1 cut(s) 396
NgoMIV GCCGGC 1 cut(s) 42
NlaIII CATG 9 cut(s) 29, 229, 712, 1019, 1037, 1150, 1249, 1418, 1715
NlaIV GGNNCC 1 cut(s) 1581
NmeAIII GCCGAG 1 cut(s) 1334
NmuCI GTSAC 1 cut(s) 451
NsiI ATGCAT 1 cut(s) 13
NspI RCATGY 1 cut(s) 1249
NspV TTCGAA 1 cut(s) 777
PciSI GCTCTTC 1 cut(s) 1106
PcsI WCGNNNNNNNCGW 4 cut(s) 147, 387, 447, 500
PctI GAATGC 2 cut(s) 785, 868
PdiI GCCGGC 1 cut(s) 44
PdmI GAANNNNTTC 2 cut(s) 1193, 1239
PfeI GAWTC 8 cut(s) 74, 146, 414, 508, 611, 643, 956, 1240
Pfl23II CGTACG 1 cut(s) 810
PflFI GACNNNGTC 1 cut(s) 593
PleI GAGTC 2 cut(s) 366, 1249
PpsI GAGTC 2 cut(s) 366, 1249
PspEI GGTNACC 1 cut(s) 1572
PspLI CGTACG 1 cut(s) 810
PspN4I GGNNCC 1 cut(s) 1581
PspPI GGNCC 4 cut(s) 242, 476, 485, 874
PsuI RGATCY 3 cut(s) 422, 903, 1271
PsyI GACNNNGTC 1 cut(s) 593
RsaI GTAC 2 cut(s) 812, 1303
RsaNI GTAC 2 cut(s) 811, 1302
RseI CAYNNNNRTG 2 cut(s) 707, 778
SapI GCTCTTC 1 cut(s) 1106
SaqAI TTAA 4 cut(s) 294, 405, 513, 962
Sau96I GGNCC 4 cut(s) 242, 476, 485, 874
SchI GAGTC 2 cut(s) 366, 1249
ScrFI CCNGG 1 cut(s) 396
SduI GDGCHC 2 cut(s) 801, 1399
SfaNI GCATC 2 cut(s) 534, 1126
SfcI CTRYAG 2 cut(s) 214, 418
SfuI TTCGAA 1 cut(s) 777
SinI GGWCC 3 cut(s) 476, 485, 874
SmiMI CAYNNNNRTG 2 cut(s) 707, 778
Sse9I AATT 4 cut(s) 220, 884, 1189, 1488
SspMI CTAG 7 cut(s) 210, 369, 386, 465, 987, 1305, 1389
StyD4I CCNGG 1 cut(s) 394
TaaI ACNGT 6 cut(s) 218, 637, 1058, 1084, 1315, 1448
TaiI ACGT 5 cut(s) 321, 1075, 1303, 1413, 1550
TaqI TCGA 9 cut(s) 72, 506, 600, 714, 777, 1104, 1187, 1258, 1499
TasI AATT 4 cut(s) 220, 884, 1189, 1488
TauI GCSGC 6 cut(s) 120, 446, 449, 669, 1458, 1461
TfiI GAWTC 8 cut(s) 74, 146, 414, 508, 611, 643, 956, 1240
Tru1I TTAA 4 cut(s) 294, 405, 513, 962
Tru9I TTAA 4 cut(s) 294, 405, 513, 962
TscAI CASTG 1 cut(s) 1453
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 4 cut(s) 161, 751, 803, 1521
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 8 cut(s) 214, 246, 950, 1186, 1403, 1529, 1547, 1665
TspGWI ACGGA 3 cut(s) 798, 887, 1545
TspRI CASTG 1 cut(s) 1453
Tth111I GACNNNGTC 1 cut(s) 593
VpaK11BI GGWCC 3 cut(s) 476, 485, 874
XbaI TCTAGA 2 cut(s) 464, 986
XceI RCATGY 1 cut(s) 1249
XmnI GAANNNNTTC 2 cut(s) 1193, 1239
XspI CTAG 7 cut(s) 210, 369, 386, 465, 987, 1305, 1389
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.