domain associated with HOX domains
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G02030 |
| fragaria_vesca | FvH4_6g12810 FvH4_6g12810 FvH4_6g12810 FvH4_6g12810 |
| malus_domestica | MD04G1138100.v1.1 MD12G1153600.v1.1 |
| prunus_persica | Prupe.6G263900_v2.0.a1 Prupe.6G263900_v2.0.a1 Prupe.6G263900_v2.0.a1 |
| pyrus_communis | pycom04g12630 pycom12g14630 |
| rosa_chinensis | RchiOBHm_Chr3g0464821 |
| rosa_laevigata | RLG00000024672 |
| rosa_multiflora | Rmu_sc0007114.1_g000006 |
| rosa_roxburghii | Rroxscaffold_6G00415420 |
| rosa_rugosa | Rorug03G0074100.1 |
| rosa_samantha | Rh3BG136800 Rh3CG139400 Rh3DG138200 |
| rosa_wichuraiana | Rw3G011180 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 323 |
| Acc36I | ACCTGC | 1 cut(s) | 779 |
| AccBSI | CCGCTC | 1 cut(s) | 1455 |
| AccII | CGCG | 2 cut(s) | 461, 503 |
| AccIII | TCCGGA | 2 cut(s) | 311, 410 |
| AclWI | GGATC | 4 cut(s) | 526, 623, 778, 898 |
| AcyI | GRCGYC | 1 cut(s) | 129 |
| AfaI | GTAC | 2 cut(s) | 812, 1303 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 113, 494, 1058 |
| AflIII | ACRYGT | 1 cut(s) | 501 |
| AgsI | TTSAA | 7 cut(s) | 35, 331, 532, 829, 850, 859, 884 |
| AluBI | AGCT | 6 cut(s) | 213, 471, 754, 761, 880, 1437 |
| AluI | AGCT | 6 cut(s) | 213, 471, 754, 761, 880, 1437 |
| Alw26I | GTCTC | 7 cut(s) | 42, 309, 797, 1042, 1172, 1247, 1287 |
| AlwI | GGATC | 4 cut(s) | 526, 623, 778, 898 |
| Ama87I | CYCGRG | 2 cut(s) | 335, 794 |
| Aor13HI | TCCGGA | 2 cut(s) | 311, 410 |
| AoxI | GGCC | 2 cut(s) | 241, 1060 |
| ApeKI | GCWGC | 4 cut(s) | 161, 751, 803, 1521 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1193, 1239 |
| AspS9I | GGNCC | 4 cut(s) | 242, 476, 485, 874 |
| AsuC2I | CCSGG | 1 cut(s) | 396 |
| AsuHPI | GGTGA | 5 cut(s) | 83, 356, 443, 445, 1522 |
| AsuII | TTCGAA | 1 cut(s) | 777 |
| AvaI | CYCGRG | 2 cut(s) | 335, 794 |
| AvaII | GGWCC | 3 cut(s) | 476, 485, 874 |
| BaeGI | GKGCMC | 2 cut(s) | 801, 1399 |
| BbsI | GAAGAC | 2 cut(s) | 319, 1309 |
| BbvI | GCAGC | 4 cut(s) | 173, 763, 790, 1533 |
| BccI | CCATC | 8 cut(s) | 73, 464, 656, 760, 1222, 1351, 1613, 1628 |
| BceAI | ACGGC | 2 cut(s) | 257, 434 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 767, 801 |
| BclI | TGATCA | 1 cut(s) | 1027 |
| BcnI | CCSGG | 1 cut(s) | 396 |
| BcoDI | GTCTC | 7 cut(s) | 42, 309, 797, 1042, 1172, 1247, 1287 |
| BfaI | CTAG | 7 cut(s) | 210, 369, 386, 465, 987, 1305, 1389 |
| BfmI | CTRYAG | 2 cut(s) | 214, 418 |
| BfuAI | ACCTGC | 1 cut(s) | 779 |
| BglII | AGATCT | 2 cut(s) | 422, 1271 |
| BlpI | GCTNAGC | 1 cut(s) | 1155 |
| Bme1390I | CCNGG | 1 cut(s) | 396 |
| Bme18I | GGWCC | 3 cut(s) | 476, 485, 874 |
| BmeT110I | CYCGRG | 2 cut(s) | 335, 794 |
| BmgT120I | GGNCC | 4 cut(s) | 242, 476, 485, 874 |
| BmiI | GGNNCC | 1 cut(s) | 1581 |
| BmrFI | CCNGG | 1 cut(s) | 396 |
| BmsI | GCATC | 2 cut(s) | 534, 1126 |
| BpiI | GAAGAC | 2 cut(s) | 319, 1309 |
| BpmI | CTGGAG | 2 cut(s) | 1156, 1271 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1155 |
| Bpu14I | TTCGAA | 1 cut(s) | 777 |
| BpuMI | CCSGG | 1 cut(s) | 396 |
| BsaHI | GRCGYC | 1 cut(s) | 129 |
| BsaI | GGTCTC | 3 cut(s) | 797, 1042, 1172 |
| BsaJI | CCNNGG | 2 cut(s) | 1057, 1353 |
| BsaWI | WCCGGW | 3 cut(s) | 311, 410, 1576 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 114, 144 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 113, 494, 1058 |
| Bse118I | RCCGGY | 4 cut(s) | 42, 164, 428, 1507 |
| BseAI | TCCGGA | 2 cut(s) | 311, 410 |
| BseDI | CCNNGG | 2 cut(s) | 1057, 1353 |
| BseGI | GGATG | 3 cut(s) | 257, 928, 1117 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 113, 494, 1058 |
| BseMII | CTCAG | 3 cut(s) | 933, 1280, 1616 |
| BseRI | GAGGAG | 5 cut(s) | 87, 90, 93, 687, 1548 |
| BseSI | GKGCMC | 2 cut(s) | 801, 1399 |
| BseXI | GCAGC | 4 cut(s) | 173, 763, 790, 1533 |
| Bsh1236I | CGCG | 2 cut(s) | 461, 503 |
| BshFI | GGCC | 2 cut(s) | 243, 1062 |
| BsiHKCI | CYCGRG | 2 cut(s) | 335, 794 |
| BsiWI | CGTACG | 1 cut(s) | 810 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 113, 494, 1058 |
| BsmAI | GTCTC | 7 cut(s) | 42, 309, 797, 1042, 1172, 1247, 1287 |
| BsmBI | CGTCTC | 2 cut(s) | 309, 1287 |
| BsmI | GAATGC | 2 cut(s) | 785, 868 |
| BsnI | GGCC | 2 cut(s) | 243, 1062 |
| Bso31I | GGTCTC | 3 cut(s) | 797, 1042, 1172 |
| BsoBI | CYCGRG | 2 cut(s) | 335, 794 |
| Bsp119I | TTCGAA | 1 cut(s) | 777 |
| Bsp1286I | GDGCHC | 2 cut(s) | 801, 1399 |
| Bsp13I | TCCGGA | 2 cut(s) | 311, 410 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1155 |
| BspANI | GGCC | 2 cut(s) | 243, 1062 |
| BspCNI | CTCAG | 3 cut(s) | 934, 1279, 1615 |
| BspEI | TCCGGA | 2 cut(s) | 311, 410 |
| BspFNI | CGCG | 2 cut(s) | 461, 503 |
| BspLI | GGNNCC | 1 cut(s) | 1581 |
| BspMI | ACCTGC | 1 cut(s) | 779 |
| BspPI | GGATC | 4 cut(s) | 526, 623, 778, 898 |
| BspQI | GCTCTTC | 1 cut(s) | 1106 |
| BspT104I | TTCGAA | 1 cut(s) | 777 |
| BspTNI | GGTCTC | 3 cut(s) | 797, 1042, 1172 |
| BsrBI | CCGCTC | 1 cut(s) | 1455 |
| BsrFI | RCCGGY | 4 cut(s) | 42, 164, 428, 1507 |
| BssAI | RCCGGY | 4 cut(s) | 42, 164, 428, 1507 |
| BssECI | CCNNGG | 2 cut(s) | 1057, 1353 |
| BssNI | GRCGYC | 1 cut(s) | 129 |
| Bst4CI | ACNGT | 6 cut(s) | 218, 637, 1058, 1084, 1315, 1448 |
| Bst6I | CTCTTC | 2 cut(s) | 1106, 1230 |
| BstACI | GRCGYC | 1 cut(s) | 129 |
| BstBI | TTCGAA | 1 cut(s) | 777 |
| BstC8I | GCNNGC | 3 cut(s) | 44, 801, 1152 |
| BstDEI | CTNAG | 7 cut(s) | 820, 840, 942, 1088, 1155, 1266, 1602 |
| BstDSI | CCRYGG | 1 cut(s) | 1057 |
| BstEII | GGTNACC | 1 cut(s) | 1572 |
| BstF5I | GGATG | 3 cut(s) | 257, 928, 1117 |
| BstFNI | CGCG | 2 cut(s) | 461, 503 |
| BstMAI | GTCTC | 7 cut(s) | 42, 309, 797, 1042, 1172, 1247, 1287 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 126, 434, 443, 812, 821, 830, 1156 |
| BstNSI | RCATGY | 1 cut(s) | 1249 |
| BstPI | GGTNACC | 1 cut(s) | 1572 |
| BstSCI | CCNGG | 1 cut(s) | 394 |
| BstSFI | CTRYAG | 2 cut(s) | 214, 418 |
| BstSLI | GKGCMC | 2 cut(s) | 801, 1399 |
| BstUI | CGCG | 2 cut(s) | 461, 503 |
| BstV1I | GCAGC | 4 cut(s) | 173, 763, 790, 1533 |
| BstV2I | GAAGAC | 2 cut(s) | 319, 1309 |
| BstX2I | RGATCY | 3 cut(s) | 422, 903, 1271 |
| BstYI | RGATCY | 3 cut(s) | 422, 903, 1271 |
| BsuRI | GGCC | 2 cut(s) | 243, 1062 |
| BtgI | CCRYGG | 1 cut(s) | 1057 |
| BtgZI | GCGATG | 2 cut(s) | 442, 1647 |
| BtsCI | GGATG | 3 cut(s) | 257, 928, 1117 |
| BtsIMutI | CAGTG | 1 cut(s) | 1453 |
| BveI | ACCTGC | 1 cut(s) | 779 |
| Cac8I | GCNNGC | 3 cut(s) | 44, 801, 1152 |
| Cfr10I | RCCGGY | 4 cut(s) | 42, 164, 428, 1507 |
| Cfr13I | GGNCC | 4 cut(s) | 242, 476, 485, 874 |
| CseI | GACGC | 3 cut(s) | 118, 450, 492 |
| Csp6I | GTAC | 2 cut(s) | 811, 1302 |
| CviAII | CATG | 9 cut(s) | 26, 226, 709, 1016, 1034, 1147, 1246, 1415, 1712 |
| CviQI | GTAC | 2 cut(s) | 811, 1302 |
| DdeI | CTNAG | 7 cut(s) | 820, 840, 942, 1088, 1155, 1266, 1602 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 323 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 323 |
| Eam1104I | CTCTTC | 2 cut(s) | 1106, 1230 |
| EarI | CTCTTC | 2 cut(s) | 1106, 1230 |
| EciI | GGCGGA | 3 cut(s) | 135, 684, 1374 |
| Eco31I | GGTCTC | 3 cut(s) | 797, 1042, 1172 |
| Eco47I | GGWCC | 3 cut(s) | 476, 485, 874 |
| Eco88I | CYCGRG | 2 cut(s) | 335, 794 |
| Eco91I | GGTNACC | 1 cut(s) | 1572 |
| EcoO65I | GGTNACC | 1 cut(s) | 1572 |
| EcoT22I | ATGCAT | 1 cut(s) | 13 |
| Esp3I | CGTCTC | 2 cut(s) | 309, 1287 |
| FaeI | CATG | 9 cut(s) | 29, 229, 712, 1019, 1037, 1150, 1249, 1418, 1715 |
| FatI | CATG | 9 cut(s) | 25, 225, 708, 1015, 1033, 1146, 1245, 1414, 1711 |
| FbaI | TGATCA | 1 cut(s) | 1027 |
| FokI | GGATG | 3 cut(s) | 244, 915, 1104 |
| FspBI | CTAG | 7 cut(s) | 210, 369, 386, 465, 987, 1305, 1389 |
| GsuI | CTGGAG | 2 cut(s) | 1156, 1271 |
| HaeIII | GGCC | 2 cut(s) | 243, 1062 |
| HgaI | GACGC | 3 cut(s) | 118, 450, 492 |
| Hin1I | GRCGYC | 1 cut(s) | 129 |
| Hin1II | CATG | 9 cut(s) | 29, 229, 712, 1019, 1037, 1150, 1249, 1418, 1715 |
| HincII | GTYRAC | 1 cut(s) | 406 |
| HindII | GTYRAC | 1 cut(s) | 406 |
| HpaI | GTTAAC | 1 cut(s) | 406 |
| HphI | GGTGA | 5 cut(s) | 83, 356, 443, 445, 1522 |
| Hpy166II | GTNNAC | 3 cut(s) | 406, 724, 1444 |
| Hpy188III | TCNNGA | 9 cut(s) | 71, 312, 411, 465, 529, 551, 987, 1025, 1173 |
| Hpy8I | GTNNAC | 3 cut(s) | 406, 724, 1444 |
| Hpy99I | CGWCG | 9 cut(s) | 278, 508, 605, 608, 637, 719, 1409, 1412, 1501 |
| HpyAV | CCTTC | 3 cut(s) | 117, 255, 1646 |
| HpyCH4III | ACNGT | 6 cut(s) | 218, 637, 1058, 1084, 1315, 1448 |
| HpyCH4IV | ACGT | 5 cut(s) | 318, 1072, 1300, 1410, 1547 |
| HpyCH4V | TGCA | 3 cut(s) | 11, 788, 1117 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 126, 434, 443, 812, 821, 830, 1156 |
| HpyF3I | CTNAG | 7 cut(s) | 820, 840, 942, 1088, 1155, 1266, 1602 |
| HpySE526I | ACGT | 5 cut(s) | 318, 1072, 1300, 1410, 1547 |
| Hsp92I | GRCGYC | 1 cut(s) | 129 |
| Hsp92II | CATG | 9 cut(s) | 29, 229, 712, 1019, 1037, 1150, 1249, 1418, 1715 |
| Kpn2I | TCCGGA | 2 cut(s) | 311, 410 |
| KroI | GCCGGC | 1 cut(s) | 42 |
| KroNI | GCCGGC | 1 cut(s) | 44 |
| Ksp22I | TGATCA | 1 cut(s) | 1027 |
| KspAI | GTTAAC | 1 cut(s) | 406 |
| LguI | GCTCTTC | 1 cut(s) | 1106 |
| LmnI | GCTCC | 4 cut(s) | 811, 1042, 1452, 1579 |
| Lsp1109I | GCAGC | 4 cut(s) | 173, 763, 790, 1533 |
| LweI | GCATC | 2 cut(s) | 534, 1126 |
| MaeI | CTAG | 7 cut(s) | 210, 369, 386, 465, 987, 1305, 1389 |
| MaeII | ACGT | 5 cut(s) | 318, 1072, 1300, 1410, 1547 |
| MaeIII | GTNAC | 3 cut(s) | 451, 1078, 1572 |
| MbiI | CCGCTC | 1 cut(s) | 1455 |
| MflI | RGATCY | 3 cut(s) | 422, 903, 1271 |
| MhlI | GDGCHC | 2 cut(s) | 801, 1399 |
| MluCI | AATT | 4 cut(s) | 220, 884, 1189, 1488 |
| MluI | ACGCGT | 1 cut(s) | 501 |
| MlyI | GAGTC | 2 cut(s) | 366, 1249 |
| MmeI | TCCRAC | 4 cut(s) | 204, 656, 931, 1151 |
| Mph1103I | ATGCAT | 1 cut(s) | 13 |
| MroI | TCCGGA | 2 cut(s) | 311, 410 |
| MroNI | GCCGGC | 1 cut(s) | 42 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1193, 1239 |
| MseI | TTAA | 4 cut(s) | 294, 405, 513, 962 |
| MslI | CAYNNNNRTG | 2 cut(s) | 707, 778 |
| MspR9I | CCNGG | 1 cut(s) | 396 |
| Mva1269I | GAATGC | 2 cut(s) | 785, 868 |
| MvnI | CGCG | 2 cut(s) | 461, 503 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 126, 434, 443, 812, 821, 830, 1156 |
| NaeI | GCCGGC | 1 cut(s) | 44 |
| NciI | CCSGG | 1 cut(s) | 396 |
| NgoMIV | GCCGGC | 1 cut(s) | 42 |
| NlaIII | CATG | 9 cut(s) | 29, 229, 712, 1019, 1037, 1150, 1249, 1418, 1715 |
| NlaIV | GGNNCC | 1 cut(s) | 1581 |
| NmeAIII | GCCGAG | 1 cut(s) | 1334 |
| NmuCI | GTSAC | 1 cut(s) | 451 |
| NsiI | ATGCAT | 1 cut(s) | 13 |
| NspI | RCATGY | 1 cut(s) | 1249 |
| NspV | TTCGAA | 1 cut(s) | 777 |
| PciSI | GCTCTTC | 1 cut(s) | 1106 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 147, 387, 447, 500 |
| PctI | GAATGC | 2 cut(s) | 785, 868 |
| PdiI | GCCGGC | 1 cut(s) | 44 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1193, 1239 |
| PfeI | GAWTC | 8 cut(s) | 74, 146, 414, 508, 611, 643, 956, 1240 |
| Pfl23II | CGTACG | 1 cut(s) | 810 |
| PflFI | GACNNNGTC | 1 cut(s) | 593 |
| PleI | GAGTC | 2 cut(s) | 366, 1249 |
| PpsI | GAGTC | 2 cut(s) | 366, 1249 |
| PspEI | GGTNACC | 1 cut(s) | 1572 |
| PspLI | CGTACG | 1 cut(s) | 810 |
| PspN4I | GGNNCC | 1 cut(s) | 1581 |
| PspPI | GGNCC | 4 cut(s) | 242, 476, 485, 874 |
| PsuI | RGATCY | 3 cut(s) | 422, 903, 1271 |
| PsyI | GACNNNGTC | 1 cut(s) | 593 |
| RsaI | GTAC | 2 cut(s) | 812, 1303 |
| RsaNI | GTAC | 2 cut(s) | 811, 1302 |
| RseI | CAYNNNNRTG | 2 cut(s) | 707, 778 |
| SapI | GCTCTTC | 1 cut(s) | 1106 |
| SaqAI | TTAA | 4 cut(s) | 294, 405, 513, 962 |
| Sau96I | GGNCC | 4 cut(s) | 242, 476, 485, 874 |
| SchI | GAGTC | 2 cut(s) | 366, 1249 |
| ScrFI | CCNGG | 1 cut(s) | 396 |
| SduI | GDGCHC | 2 cut(s) | 801, 1399 |
| SfaNI | GCATC | 2 cut(s) | 534, 1126 |
| SfcI | CTRYAG | 2 cut(s) | 214, 418 |
| SfuI | TTCGAA | 1 cut(s) | 777 |
| SinI | GGWCC | 3 cut(s) | 476, 485, 874 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 707, 778 |
| Sse9I | AATT | 4 cut(s) | 220, 884, 1189, 1488 |
| SspMI | CTAG | 7 cut(s) | 210, 369, 386, 465, 987, 1305, 1389 |
| StyD4I | CCNGG | 1 cut(s) | 394 |
| TaaI | ACNGT | 6 cut(s) | 218, 637, 1058, 1084, 1315, 1448 |
| TaiI | ACGT | 5 cut(s) | 321, 1075, 1303, 1413, 1550 |
| TaqI | TCGA | 9 cut(s) | 72, 506, 600, 714, 777, 1104, 1187, 1258, 1499 |
| TasI | AATT | 4 cut(s) | 220, 884, 1189, 1488 |
| TauI | GCSGC | 6 cut(s) | 120, 446, 449, 669, 1458, 1461 |
| TfiI | GAWTC | 8 cut(s) | 74, 146, 414, 508, 611, 643, 956, 1240 |
| Tru1I | TTAA | 4 cut(s) | 294, 405, 513, 962 |
| Tru9I | TTAA | 4 cut(s) | 294, 405, 513, 962 |
| TscAI | CASTG | 1 cut(s) | 1453 |
| TseFI | GTSAC | 1 cut(s) | 451 |
| TseI | GCWGC | 4 cut(s) | 161, 751, 803, 1521 |
| Tsp45I | GTSAC | 1 cut(s) | 451 |
| TspDTI | ATGAA | 8 cut(s) | 214, 246, 950, 1186, 1403, 1529, 1547, 1665 |
| TspGWI | ACGGA | 3 cut(s) | 798, 887, 1545 |
| TspRI | CASTG | 1 cut(s) | 1453 |
| Tth111I | GACNNNGTC | 1 cut(s) | 593 |
| VpaK11BI | GGWCC | 3 cut(s) | 476, 485, 874 |
| XbaI | TCTAGA | 2 cut(s) | 464, 986 |
| XceI | RCATGY | 1 cut(s) | 1249 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1193, 1239 |
| XspI | CTAG | 7 cut(s) | 210, 369, 386, 465, 987, 1305, 1389 |
| Zsp2I | ATGCAT | 1 cut(s) | 13 |