AT5G03440

Protein of unknown function (DUF4050)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012852
Physical Location & Seq
Reverse (-)
856815 .. 858444
1630 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G03440.2

Sequence Viewer

Length: 297 bp
ATGGAAGCTAATAAGGAGCCTGGTAATGTGTCAAGTAATTCGAGCAATGATAAAGAGAAGTCGTCTGAGGAGATCTTTGTCAACCATGCCGAGATTGCGTGGCAAGAGATGAGAAAGAAGTGGGTTGGTGATCCGTCTAATAGGACTTCAGAGATGCCTGATGAACCTGTAATTGGTTTCAACGCTACCTATGAAGACTTGCTCACATCCAACACTCCTTTCAACAAGCCGATCCCTCTAGCTGAAATGGTGGATTTTCTGTTCGATATCTGGCACGGGGATGGTCTTTTCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4050

Protein Analysis

98

Amino Acids

11.15

Weight (kDa)

4.41

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
clamp_Gag1-like PF13259 60 - 98 1.8e-09 Gag1-like, clamp domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012852)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03440 AT5G03440 AT5G03440
fragaria_vesca FvH4_6g16540
malus_domestica MD04G1091600.v1.1 MD12G1109500.v1.1
prunus_persica Prupe.7G128200_v2.0.a1
pyrus_communis pycom04g08630
rosa_chinensis RchiOBHm_Chr3g0470451
rosa_laevigata RLG00000024266
rosa_multiflora Rmu_sc0003381.1_g000005
rosa_roxburghii Rroxscaffold_6G00410790
rosa_rugosa Rorug03G0109200
rosa_samantha Rh3AG159600 Rh3BG184100 Rh3CG174600 Rh3DG190800
rosa_wichuraiana Rw3G015100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 125, 226
AcuI CTGAAG 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 2 cut(s) 181, 223
AjnI CCWGG 1 cut(s) 19
AjuI GAANNNNNNNTTGG 4 cut(s) 156, 188, 203, 235
AloI GAACNNNNNNTCC 2 cut(s) 245, 277
AluBI AGCT 2 cut(s) 8, 242
AluI AGCT 2 cut(s) 8, 242
AlwI GGATC 2 cut(s) 125, 226
AsuHPI GGTGA 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 201
BccI CCATC 1 cut(s) 275
BciT130I CCWGG 1 cut(s) 21
BfaI CTAG 1 cut(s) 239
BglII AGATCT 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 21
BmsI GCATC 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 201
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 52
BseBI CCWGG 1 cut(s) 21
BseGI GGATG 2 cut(s) 206, 286
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMI GCAATG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 173
Bsp143I GATC 3 cut(s) 72, 130, 231
BspCNI CTCAG 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 18
BspPI GGATC 2 cut(s) 125, 226
BsrDI GCAATG 1 cut(s) 52
BssMI GATC 3 cut(s) 72, 130, 231
Bst2UI CCWGG 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 2 cut(s) 206, 286
BstKTI GATC 3 cut(s) 75, 133, 234
BstMBI GATC 3 cut(s) 72, 130, 231
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNI CCWGG 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 19
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 72
BstYI RGATCY 1 cut(s) 72
BtsCI GGATG 2 cut(s) 206, 286
CviAII CATG 1 cut(s) 86
CviJI RGCY 4 cut(s) 8, 19, 229, 242
CviKI_1 RGCY 4 cut(s) 8, 19, 229, 242
DdeI CTNAG 1 cut(s) 66
DpnI GATC 3 cut(s) 74, 132, 233
DpnII GATC 3 cut(s) 72, 130, 231
Eco32I GATATC 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 19
EcoRV GATATC 1 cut(s) 268
FaeI CATG 1 cut(s) 89
FaiI YATR 2 cut(s) 87, 192
FatI CATG 1 cut(s) 85
FokI GGATG 2 cut(s) 193, 293
FspBI CTAG 1 cut(s) 239
Hin1II CATG 1 cut(s) 89
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 2 cut(s) 67, 151
Hpy8I GTNNAC 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 66
Hsp92II CATG 1 cut(s) 89
Kzo9I GATC 3 cut(s) 72, 130, 231
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 5 cut(s) 6, 33, 171, 180, 256
LweI GCATC 1 cut(s) 144
MaeI CTAG 1 cut(s) 239
MalI GATC 3 cut(s) 74, 132, 233
MboI GATC 3 cut(s) 72, 130, 231
MboII GAAGA 1 cut(s) 206
MflI RGATCY 1 cut(s) 72
MluCI AATT 2 cut(s) 37, 171
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 2 cut(s) 61, 246
MslI CAYNNNNRTG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 21
MvaI CCWGG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 95
NdeII GATC 3 cut(s) 72, 130, 231
NlaIII CATG 1 cut(s) 89
NlaIV GGNNCC 1 cut(s) 18
NmeAIII GCCGAG 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 18
PsuI RGATCY 1 cut(s) 72
RseI CAYNNNNRTG 1 cut(s) 279
Sau3AI GATC 3 cut(s) 72, 130, 231
ScrFI CCNGG 1 cut(s) 21
SetI ASST 4 cut(s) 10, 169, 191, 244
SfaNI GCATC 1 cut(s) 144
SmiMI CAYNNNNRTG 1 cut(s) 279
Sse9I AATT 2 cut(s) 37, 171
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 19
TaqI TCGA 3 cut(s) 41, 264, 291
TasI AATT 2 cut(s) 37, 171
TspDTI ATGAA 2 cut(s) 177, 207
TspGWI ACGGA 1 cut(s) 123
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.